AFF2 36636

Name: AFF2	Sequence: fasta or formatted (1311aa)		NCBI GI: 87162461
Description: fragile X mental retardation 2		Referenced in: Additional Genes in Development
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 87 2 C cysteine 1.1 15 1 D aspartate 4.4 58 2 E glutamate 7.1 93 2 F phenylalanine 2.9 38 2 G glycine 3.9 51 2 H histidine 2.3 30 2 I isoleucine 3.8 50 2 K lysine 7.9 103 3 L leucine 7.7 101 2 M methionine 2.2 29 1 N asparagine 5.9 77 3 P proline 9.4 123 3 Q glutamine 4.3 57 2 R arginine 4.0 53 3 S serine 10.7 140 4 T threonine 8.8 115 8 V valine 4.3 57 2 W tryptophan 1.0 13 1 Y tyrosine 1.6 21 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 fragile X mental retardation 2 AFF4 0.232 ALL1 fused gene from 5q31 AFF3 0.167 AF4/FMR2 family, member 3 isoform 1 AFF3 0.161 AF4/FMR2 family, member 3 isoform 2 AFF1 0.117 myeloid/lymphoid or mixed-lineage leukemia trithorax ... PRG4 0.022 proteoglycan 4 isoform D PRG4 0.022 proteoglycan 4 isoform C PRG4 0.022 proteoglycan 4 isoform B PRG4 0.022 proteoglycan 4 isoform A LOC730474 0.015 PREDICTED: hypothetical protein DPCR1 0.015 diffuse panbronchiolitis critical region 1 protein ... MUC12 0.015 PREDICTED: mucin 12 LOC100294236 0.014 PREDICTED: similar to diffuse panbronchiolitis crit... NOLC1 0.014 nucleolar and coiled-body phosphoprotein 1 LOC730474 0.014 PREDICTED: hypothetical protein, partial MUC12 0.014 PREDICTED: mucin 12, cell surface associated MUC17 0.014 mucin 17 MDC1 0.014 mediator of DNA-damage checkpoint 1 LOC100134138 0.013 PREDICTED: similar to mucin, partial LOC100294470 0.011 PREDICTED: hypothetical protein, partial TCOF1 0.011 Treacher Collins-Franceschetti syndrome 1 isoform f... TCOF1 0.011 Treacher Collins-Franceschetti syndrome 1 isoform e... TCOF1 0.011 Treacher Collins-Franceschetti syndrome 1 isoform d... TCOF1 0.011 Treacher Collins-Franceschetti syndrome 1 isoform b ... TCOF1 0.011 Treacher Collins-Franceschetti syndrome 1 isoform a ... TCOF1 0.011 Treacher Collins-Franceschetti syndrome 1 isoform c ... NEFH 0.011 neurofilament, heavy polypeptide 200kDa LOC100294335 0.011 PREDICTED: similar to c114 SLIT-like testicular pro... LOC100294335 0.011 PREDICTED: similar to c114 SLIT-like testicular pro... MUC6 0.011 mucin 6, gastric Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.