MATN1 28980

Name: MATN1	Sequence: fasta or formatted (496aa)		NCBI GI: 4505111
Description: matrilin 1, cartilage matrix protein		Referenced in: Bone and Related Tissues Extracellular Matrix
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.5 42 2 C cysteine 2.8 14 1 D aspartate 5.8 29 1 E glutamate 5.6 28 2 F phenylalanine 4.4 22 1 G glycine 7.3 36 4 H histidine 1.4 7 1 I isoleucine 4.4 22 1 K lysine 6.7 33 2 L leucine 8.7 43 5 M methionine 1.6 8 1 N asparagine 2.2 11 1 P proline 3.0 15 1 Q glutamine 4.6 23 1 R arginine 5.2 26 2 S serine 9.7 48 3 T threonine 5.2 26 1 V valine 10.7 53 2 W tryptophan 0.0 0 0 Y tyrosine 2.0 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 matrilin 1, cartilage matrix protein MATN4 0.462 matrilin 4 isoform 3 precursor MATN4 0.451 matrilin 4 isoform 2 precursor MATN4 0.269 matrilin 4 isoform 1 precursor MATN3 0.267 matrilin 3 precursor MATN2 0.235 matrilin 2 isoform b precursor MATN2 0.232 matrilin 2 isoform a precursor COL29A1 0.181 collagen, type XXIX, alpha 1 COL6A6 0.171 collagen type VI alpha 6 VIT 0.169 vitrin COCH 0.143 cochlin precursor COCH 0.143 cochlin precursor COL22A1 0.143 collagen, type XXII, alpha 1 COL6A3 0.140 alpha 3 type VI collagen isoform 5 precursor COL6A3 0.140 alpha 3 type VI collagen isoform 1 precursor COL6A3 0.140 alpha 3 type VI collagen isoform 4 precursor COL12A1 0.133 collagen, type XII, alpha 1 long isoform precursor [... COL21A1 0.133 collagen, type XXI, alpha 1 precursor COL14A1 0.132 collagen, type XIV, alpha 1 COL12A1 0.128 collagen, type XII, alpha 1 short isoform precursor ... COL6A3 0.124 alpha 3 type VI collagen isoform 3 precursor COL6A3 0.121 alpha 3 type VI collagen isoform 2 precursor VWA2 0.113 von Willebrand factor A domain containing 2 COL20A1 0.112 collagen, type XX, alpha 1 COL7A1 0.106 alpha 1 type VII collagen precursor COL28A1 0.091 collagen, type XXVIII precursor VWF 0.090 von Willebrand factor preproprotein COL6A1 0.073 collagen, type VI, alpha 1 precursor VWA1 0.073 von Willebrand factor A domain containing 1 isoform ... ITGAM 0.073 integrin alpha M isoform 1 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.