Guide to the Human Genome
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Name: VIT Sequence: fasta or formatted (693aa) NCBI GI: 21359974
Description:

vitrin

Referenced in:

Crystallins and Other Eye Proteins
Auditory and Vestibular Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         55           2
 C cysteine            1.4         10           1
 D aspartate           4.9         34           2
 E glutamate           4.3         30           2
 F phenylalanine       4.0         28           2
 G glycine             7.5         52           2
 H histidine           1.7         12           1
 I isoleucine          5.6         39           2
 K lysine              6.5         45           2
 L leucine             7.1         49           2
 M methionine          1.4         10           1
 N asparagine          4.2         29           1
 P proline             5.8         40           2
 Q glutamine           4.5         31           1
 R arginine            4.9         34           2
 S serine              8.8         61           3
 T threonine           7.1         49           2
 V valine              8.4         58           4
 W tryptophan          1.0          7           1
 Y tyrosine            2.9         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vitrin 
COCH                  0.257   cochlin precursor 
COCH                  0.257   cochlin precursor 
MATN1                 0.117   matrilin 1, cartilage matrix protein 
COL6A3                0.112   alpha 3 type VI collagen isoform 1 precursor 
COL6A6                0.109   collagen type VI alpha 6 
COL29A1               0.109   collagen, type XXIX, alpha 1 
MATN4                 0.105   matrilin 4 isoform 3 precursor 
COL6A3                0.096   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.096   alpha 3 type VI collagen isoform 2 precursor 
COL6A3                0.096   alpha 3 type VI collagen isoform 3 precursor 
COL6A3                0.085   alpha 3 type VI collagen isoform 4 precursor 
COL14A1               0.079   collagen, type XIV, alpha 1 
COL12A1               0.079   collagen, type XII, alpha 1 long isoform precursor [...
COL7A1                0.075   alpha 1 type VII collagen precursor 
COL12A1               0.073   collagen, type XII, alpha 1 short isoform precursor ...
COL21A1               0.066   collagen, type XXI, alpha 1 precursor 
MATN2                 0.066   matrilin 2 isoform b precursor 
MATN2                 0.066   matrilin 2 isoform a precursor 
COL22A1               0.065   collagen, type XXII, alpha 1 
MATN4                 0.062   matrilin 4 isoform 2 precursor 
MATN4                 0.062   matrilin 4 isoform 1 precursor 
VWA2                  0.057   von Willebrand factor A domain containing 2 
MATN3                 0.055   matrilin 3 precursor 
COL20A1               0.054   collagen, type XX, alpha 1 
ITGAM                 0.045   integrin alpha M isoform 1 precursor 
ITGAM                 0.045   integrin alpha M isoform 2 precursor 
VWF                   0.045   von Willebrand factor preproprotein 
ITGAX                 0.044   integrin alpha X precursor 
ITGAD                 0.043   integrin, alpha D precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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