VIT 12890

Name: VIT	Sequence: fasta or formatted (693aa)		NCBI GI: 21359974
Description: vitrin		Referenced in: Crystallins and Other Eye Proteins Auditory and Vestibular Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.9 55 2 C cysteine 1.4 10 1 D aspartate 4.9 34 2 E glutamate 4.3 30 2 F phenylalanine 4.0 28 2 G glycine 7.5 52 2 H histidine 1.7 12 1 I isoleucine 5.6 39 2 K lysine 6.5 45 2 L leucine 7.1 49 2 M methionine 1.4 10 1 N asparagine 4.2 29 1 P proline 5.8 40 2 Q glutamine 4.5 31 1 R arginine 4.9 34 2 S serine 8.8 61 3 T threonine 7.1 49 2 V valine 8.4 58 4 W tryptophan 1.0 7 1 Y tyrosine 2.9 20 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vitrin COCH 0.257 cochlin precursor COCH 0.257 cochlin precursor MATN1 0.117 matrilin 1, cartilage matrix protein COL6A3 0.112 alpha 3 type VI collagen isoform 1 precursor COL6A6 0.109 collagen type VI alpha 6 COL29A1 0.109 collagen, type XXIX, alpha 1 MATN4 0.105 matrilin 4 isoform 3 precursor COL6A3 0.096 alpha 3 type VI collagen isoform 5 precursor COL6A3 0.096 alpha 3 type VI collagen isoform 2 precursor COL6A3 0.096 alpha 3 type VI collagen isoform 3 precursor COL6A3 0.085 alpha 3 type VI collagen isoform 4 precursor COL14A1 0.079 collagen, type XIV, alpha 1 COL12A1 0.079 collagen, type XII, alpha 1 long isoform precursor [... COL7A1 0.075 alpha 1 type VII collagen precursor COL12A1 0.073 collagen, type XII, alpha 1 short isoform precursor ... COL21A1 0.066 collagen, type XXI, alpha 1 precursor MATN2 0.066 matrilin 2 isoform b precursor MATN2 0.066 matrilin 2 isoform a precursor COL22A1 0.065 collagen, type XXII, alpha 1 MATN4 0.062 matrilin 4 isoform 2 precursor MATN4 0.062 matrilin 4 isoform 1 precursor VWA2 0.057 von Willebrand factor A domain containing 2 MATN3 0.055 matrilin 3 precursor COL20A1 0.054 collagen, type XX, alpha 1 ITGAM 0.045 integrin alpha M isoform 1 precursor ITGAM 0.045 integrin alpha M isoform 2 precursor VWF 0.045 von Willebrand factor preproprotein ITGAX 0.044 integrin alpha X precursor ITGAD 0.043 integrin, alpha D precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.