Guide to the Human Genome
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Name: MATN2 Sequence: fasta or formatted (937aa) NCBI GI: 62548862
Description:

matrilin 2 isoform b precursor

Referenced in:

Extracellular Matrix

Other entries for this name:
alt prot [956aa] matrilin 2 isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         58           2
 C cysteine            7.2         67           1
 D aspartate           6.0         56           2
 E glutamate           8.1         76           3
 F phenylalanine       3.7         35           1
 G glycine             6.6         62           1
 H histidine           3.8         36           2
 I isoleucine          4.4         41           2
 K lysine              6.0         56           2
 L leucine             7.7         72           2
 M methionine          2.0         19           1
 N asparagine          4.2         39           2
 P proline             2.6         24           1
 Q glutamine           4.1         38           2
 R arginine            5.9         55           2
 S serine              7.4         69           2
 T threonine           5.3         50           2
 V valine              6.1         57           2
 W tryptophan          0.1          1           1
 Y tyrosine            2.8         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   matrilin 2 isoform b precursor 
MATN2                 0.994   matrilin 2 isoform a precursor 
MATN3                 0.175   matrilin 3 precursor 
MATN4                 0.174   matrilin 4 isoform 1 precursor 
MATN4                 0.147   matrilin 4 isoform 2 precursor 
FBN3                  0.137   fibrillin 3 precursor 
SCUBE1                0.131   signal peptide, CUB domain, EGF-like 1 
MATN4                 0.130   matrilin 4 isoform 3 precursor 
FBN2                  0.130   fibrillin 2 precursor 
SCUBE3                0.129   signal peptide, CUB domain, EGF-like 3 
SCUBE2                0.119   CEGP1 protein 
MEGF6                 0.116   EGF-like-domain, multiple 3 
MATN1                 0.115   matrilin 1, cartilage matrix protein 
FBN1                  0.114   fibrillin 1 precursor 
LTBP1                 0.110   latent transforming growth factor beta binding prote...
LTBP1                 0.110   latent transforming growth factor beta binding prote...
FBLN2                 0.107   fibulin 2 isoform a precursor 
FBLN2                 0.101   fibulin 2 isoform b precursor 
LTBP2                 0.100   latent transforming growth factor beta binding protei...
FBLN1                 0.094   fibulin 1 isoform C precursor 
FBLN1                 0.094   fibulin 1 isoform B precursor 
FBLN1                 0.094   fibulin 1 isoform A precursor 
FBLN1                 0.094   fibulin 1 isoform D 
LTBP4                 0.087   latent transforming growth factor beta binding prot...
LTBP4                 0.087   latent transforming growth factor beta binding prot...
LTBP4                 0.087   latent transforming growth factor beta binding prot...
HMCN1                 0.084   hemicentin 1 
LTBP3                 0.081   latent transforming growth factor beta binding prot...
LTBP3                 0.078   latent transforming growth factor beta binding prote...
FBLN5                 0.076   fibulin 5 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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