COCH 30598

Name: COCH	Sequence: fasta or formatted (550aa)		NCBI GI: 4758022
Description: cochlin precursor		Referenced in: Crystallins and Other Eye Proteins Auditory and Vestibular Functions
Other entries for this name: alt mRNA [550aa] cochlin precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.4 46 4 C cysteine 2.0 11 1 D aspartate 5.1 28 2 E glutamate 4.7 26 2 F phenylalanine 6.4 35 2 G glycine 9.3 51 2 H histidine 1.6 9 1 I isoleucine 6.5 36 1 K lysine 6.4 35 2 L leucine 5.8 32 4 M methionine 1.8 10 2 N asparagine 4.4 24 2 P proline 4.5 25 2 Q glutamine 3.1 17 2 R arginine 4.0 22 2 S serine 8.0 44 3 T threonine 5.8 32 2 V valine 9.1 50 4 W tryptophan 0.9 5 1 Y tyrosine 2.2 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 cochlin precursor COCH 1.000 cochlin precursor VIT 0.324 vitrin MATN1 0.125 matrilin 1, cartilage matrix protein COL6A6 0.120 collagen type VI alpha 6 COL6A3 0.120 alpha 3 type VI collagen isoform 1 precursor COL29A1 0.113 collagen, type XXIX, alpha 1 MATN4 0.111 matrilin 4 isoform 3 precursor COL6A3 0.107 alpha 3 type VI collagen isoform 5 precursor COL6A3 0.107 alpha 3 type VI collagen isoform 3 precursor COL6A3 0.105 alpha 3 type VI collagen isoform 2 precursor COL12A1 0.099 collagen, type XII, alpha 1 long isoform precursor [... COL6A3 0.096 alpha 3 type VI collagen isoform 4 precursor COL22A1 0.088 collagen, type XXII, alpha 1 COL14A1 0.087 collagen, type XIV, alpha 1 COL12A1 0.085 collagen, type XII, alpha 1 short isoform precursor ... MATN2 0.077 matrilin 2 isoform b precursor MATN2 0.077 matrilin 2 isoform a precursor COL7A1 0.074 alpha 1 type VII collagen precursor COL21A1 0.073 collagen, type XXI, alpha 1 precursor COL20A1 0.073 collagen, type XX, alpha 1 VWF 0.072 von Willebrand factor preproprotein MATN4 0.072 matrilin 4 isoform 2 precursor MATN4 0.072 matrilin 4 isoform 1 precursor VWA2 0.065 von Willebrand factor A domain containing 2 MATN3 0.059 matrilin 3 precursor VWA1 0.050 von Willebrand factor A domain containing 1 isoform ... ITGAX 0.050 integrin alpha X precursor SVEP1 0.047 polydom ITGAM 0.047 integrin alpha M isoform 1 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.