Guide to the Human Genome
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Name: COCH Sequence: fasta or formatted (550aa) NCBI GI: 4758022
Description:

cochlin precursor

Referenced in:

Crystallins and Other Eye Proteins
Auditory and Vestibular Functions

Other entries for this name:
alt mRNA [550aa] cochlin precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         46           4
 C cysteine            2.0         11           1
 D aspartate           5.1         28           2
 E glutamate           4.7         26           2
 F phenylalanine       6.4         35           2
 G glycine             9.3         51           2
 H histidine           1.6          9           1
 I isoleucine          6.5         36           1
 K lysine              6.4         35           2
 L leucine             5.8         32           4
 M methionine          1.8         10           2
 N asparagine          4.4         24           2
 P proline             4.5         25           2
 Q glutamine           3.1         17           2
 R arginine            4.0         22           2
 S serine              8.0         44           3
 T threonine           5.8         32           2
 V valine              9.1         50           4
 W tryptophan          0.9          5           1
 Y tyrosine            2.2         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cochlin precursor 
COCH                  1.000   cochlin precursor 
VIT                   0.324   vitrin 
MATN1                 0.125   matrilin 1, cartilage matrix protein 
COL6A6                0.120   collagen type VI alpha 6 
COL6A3                0.120   alpha 3 type VI collagen isoform 1 precursor 
COL29A1               0.113   collagen, type XXIX, alpha 1 
MATN4                 0.111   matrilin 4 isoform 3 precursor 
COL6A3                0.107   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.107   alpha 3 type VI collagen isoform 3 precursor 
COL6A3                0.105   alpha 3 type VI collagen isoform 2 precursor 
COL12A1               0.099   collagen, type XII, alpha 1 long isoform precursor [...
COL6A3                0.096   alpha 3 type VI collagen isoform 4 precursor 
COL22A1               0.088   collagen, type XXII, alpha 1 
COL14A1               0.087   collagen, type XIV, alpha 1 
COL12A1               0.085   collagen, type XII, alpha 1 short isoform precursor ...
MATN2                 0.077   matrilin 2 isoform b precursor 
MATN2                 0.077   matrilin 2 isoform a precursor 
COL7A1                0.074   alpha 1 type VII collagen precursor 
COL21A1               0.073   collagen, type XXI, alpha 1 precursor 
COL20A1               0.073   collagen, type XX, alpha 1 
VWF                   0.072   von Willebrand factor preproprotein 
MATN4                 0.072   matrilin 4 isoform 2 precursor 
MATN4                 0.072   matrilin 4 isoform 1 precursor 
VWA2                  0.065   von Willebrand factor A domain containing 2 
MATN3                 0.059   matrilin 3 precursor 
VWA1                  0.050   von Willebrand factor A domain containing 1 isoform ...
ITGAX                 0.050   integrin alpha X precursor 
SVEP1                 0.047   polydom 
ITGAM                 0.047   integrin alpha M isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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