Search of human proteins with 4504401

Search of human proteins with 4504401

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4504401 major histocompatibility complex, class II, DO alpha
precursor [Homo sapiens]
         (250 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4504401 major histocompatibility complex, class II, DO alpha ...   511   e-145
gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]    294   4e-80
gi|169217612 PREDICTED: similar to major histocompatibility comp...   292   2e-79
gi|113430811 PREDICTED: similar to major histocompatibility comp...   292   2e-79
gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa...   292   2e-79
gi|239740747 PREDICTED: similar to major histocompatibility comp...   292   2e-79
gi|239740697 PREDICTED: similar to major histocompatibility comp...   292   2e-79
gi|18426975 major histocompatibility complex, class II, DQ alpha...   288   2e-78
gi|239740861 PREDICTED: similar to major histocompatibility comp...   284   4e-77
gi|239513953 PREDICTED: similar to major histocompatibility comp...   284   4e-77
gi|24797074 major histocompatibility complex, class II, DP alpha...   283   1e-76
gi|52426774 major histocompatibility complex, class II, DR alpha...   283   1e-76
gi|11095447 major histocompatibility complex, class II, DQ alpha...   281   3e-76
gi|169218140 PREDICTED: similar to major histocompatibility comp...   190   1e-48
gi|239752547 PREDICTED: similar to major histocompatibility comp...   124   1e-28
gi|18765715 major histocompatibility complex, class II, DM alpha...   102   3e-22
gi|24797076 major histocompatibility complex, class II, DP beta ...    80   2e-15
gi|239758095 PREDICTED: similar to major histocompatibility comp...    77   2e-14
gi|239740749 PREDICTED: similar to major histocompatibility comp...    77   2e-14
gi|52630344 major histocompatibility complex, class II, DR beta ...    75   4e-14
gi|239758090 PREDICTED: major histocompatibility complex, class ...    75   4e-14
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...    75   7e-14
gi|239740859 PREDICTED: similar to major histocompatibility comp...    75   7e-14
gi|239740857 PREDICTED: similar to major histocompatibility comp...    75   7e-14
gi|239740855 PREDICTED: similar to major histocompatibility comp...    74   9e-14
gi|239740853 PREDICTED: similar to major histocompatibility comp...    74   9e-14
gi|18641375 major histocompatibility complex, class II, DR beta ...    74   9e-14
gi|169168591 PREDICTED: similar to major histocompatibility comp...    74   1e-13
gi|239748788 PREDICTED: similar to major histocompatibility comp...    74   1e-13
gi|239740920 PREDICTED: similar to major histocompatibility comp...    74   1e-13

>gi|4504401 major histocompatibility complex, class II, DO alpha
           precursor [Homo sapiens]
          Length = 250

 Score =  511 bits (1316), Expect = e-145
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV
Sbjct: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK
Sbjct: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
           SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV
Sbjct: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII
Sbjct: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240

Query: 241 MGTYVSSVPR 250
           MGTYVSSVPR
Sbjct: 241 MGTYVSSVPR 250


>gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]
          Length = 255

 Score =  294 bits (753), Expect = 4e-80
 Identities = 141/242 (58%), Positives = 178/242 (73%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQ++HEFD ++ F V
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DL++ E VW+LP F  F RFDPQ  L  IA +K +L+I+++RSN + A N  P VTV  K
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
           S V LGQPN LIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL F+
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PSA+++YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG +VGTVLII
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 MG 242
            G
Sbjct: 241 RG 242


>gi|169217612 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 isoform 1 [Homo sapiens]
          Length = 254

 Score =  292 bits (747), Expect = 2e-79
 Identities = 143/242 (59%), Positives = 177/242 (73%), Gaps = 1/242 (0%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQFTHEFD ++ F V
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DL++ E VW+LP F    RFDPQ  L  IA +K +L+IL++RSN + A N  P VTV  K
Sbjct: 61  DLERKETVWKLPLFHRL-RFDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
           S V LGQPN LIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL F+
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PSA+++YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG +VGTVLII
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 MG 242
            G
Sbjct: 240 RG 241


>gi|113430811 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 255

 Score =  292 bits (747), Expect = 2e-79
 Identities = 140/242 (57%), Positives = 177/242 (73%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQ++HEFD ++ F V
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DL++ E VW+LP F  F RFDPQ  L  IA +K +L+I+++RSN + A N  P VTV  K
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
           S V LGQPN LIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL F+
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PS +++YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG +VGTVLII
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 MG 242
            G
Sbjct: 241 RG 242


>gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 255

 Score =  292 bits (747), Expect = 2e-79
 Identities = 140/242 (57%), Positives = 177/242 (73%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQ++HEFD ++ F V
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DL++ E VW+LP F  F RFDPQ  L  IA +K +L+I+++RSN + A N  P VTV  K
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
           S V LGQPN LIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL F+
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PS +++YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG +VGTVLII
Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240

Query: 241 MG 242
            G
Sbjct: 241 RG 242


>gi|239740747 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  292 bits (747), Expect = 2e-79
 Identities = 143/242 (59%), Positives = 177/242 (73%), Gaps = 1/242 (0%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQFTHEFD ++ F V
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DL++ E VW+LP F    RFDPQ  L  IA +K +L+IL++RSN + A N  P VTV  K
Sbjct: 61  DLERKETVWKLPLFHRL-RFDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
           S V LGQPN LIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL F+
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PSA+++YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG +VGTVLII
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 MG 242
            G
Sbjct: 240 RG 241


>gi|239740697 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  292 bits (747), Expect = 2e-79
 Identities = 143/242 (59%), Positives = 177/242 (73%), Gaps = 1/242 (0%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQFTHEFD ++ F V
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DL++ E VW+LP F    RFDPQ  L  IA +K +L+IL++RSN + A N  P VTV  K
Sbjct: 61  DLERKETVWKLPLFHRL-RFDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
           S V LGQPN LIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL F+
Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PSA+++YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG +VGTVLII
Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239

Query: 241 MG 242
            G
Sbjct: 240 RG 241


>gi|18426975 major histocompatibility complex, class II, DQ alpha 1
           precursor [Homo sapiens]
          Length = 255

 Score =  288 bits (738), Expect = 2e-78
 Identities = 137/242 (56%), Positives = 173/242 (71%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           M L   L+LG   L T++SP       ADH+ S G   YQ YG SGQ+THEFD ++ F V
Sbjct: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DL++ E  WR PEF  F  FDPQG L  +A  K +L+I+++R N + A N  P VTV  K
Sbjct: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
           S V LGQPN LIC+VDNIFPPV+NITWL NGQ+VTEGV++TSF S+ DH F K  YL F+
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PSA+++YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GL+G +VGTV II
Sbjct: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240

Query: 241 MG 242
            G
Sbjct: 241 QG 242


>gi|239740861 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  284 bits (727), Expect = 4e-77
 Identities = 141/242 (58%), Positives = 172/242 (71%), Gaps = 1/242 (0%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQ+THEFD ++ F V
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DL + E VW LP    F RFDPQ  L  IA +K +L+ L++RSN + A N  P VTV  K
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
           S V LGQPNILIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL  +
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PSAE+ YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG +VGTV II
Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239

Query: 241 MG 242
            G
Sbjct: 240 RG 241


>gi|239513953 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  284 bits (727), Expect = 4e-77
 Identities = 141/242 (58%), Positives = 172/242 (71%), Gaps = 1/242 (0%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQ+THEFD ++ F V
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DL + E VW LP    F RFDPQ  L  IA +K +L+ L++RSN + A N  P VTV  K
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
           S V LGQPNILIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL  +
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PSAE+ YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG +VGTV II
Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239

Query: 241 MG 242
            G
Sbjct: 240 RG 241


>gi|24797074 major histocompatibility complex, class II, DP alpha 1
           precursor [Homo sapiens]
          Length = 260

 Score =  283 bits (723), Expect = 1e-76
 Identities = 138/244 (56%), Positives = 174/244 (71%), Gaps = 1/244 (0%)

Query: 7   LVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSVDLKKSE 66
           ++L   +L  LLS + AGA KADH+ +Y  AF Q++  +G+F  EFDE+++F VDL K E
Sbjct: 13  VILRALSLAFLLSLRGAGAIKADHVSTYA-AFVQTHRPTGEFMFEFDEDEMFYVDLDKKE 71

Query: 67  AVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPKSRVELG 126
            VW L EFG    F+ QGGLA IA +  +L+ L++RSN ++A N PP VTV PK  VELG
Sbjct: 72  TVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEVTVFPKEPVELG 131

Query: 127 QPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFVPSAEDV 186
           QPN LIC +D  FPPV+N+TWL NG+ VTEGVA++ F  + D+ F KFHYL FVPSAED 
Sbjct: 132 QPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAEDF 191

Query: 187 YDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLIIMGTYVS 246
           YDC+VEHWGLD PLL+HWE Q PI  P+  ET++CALGL +GLVG +VGTVLII      
Sbjct: 192 YDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVGTVLIIKSLRSG 251

Query: 247 SVPR 250
             PR
Sbjct: 252 HDPR 255


>gi|52426774 major histocompatibility complex, class II, DR alpha
           precursor [Homo sapiens]
          Length = 254

 Score =  283 bits (723), Expect = 1e-76
 Identities = 134/242 (55%), Positives = 171/242 (70%), Gaps = 1/242 (0%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           MA+    VLGF  +  L+S QE+ A K +H+      FY +   SG+F  +FD +++F V
Sbjct: 1   MAISGVPVLGFFIIAVLMSAQESWAIKEEHV-IIQAEFYLNPDQSGEFMFDFDGDEIFHV 59

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           D+ K E VWRL EFG FA F+ QG LA IA  KA+L+I+ +RSN +   NVPP VTVL  
Sbjct: 60  DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN 119

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
           S VEL +PN+LIC +D   PPV+N+TWLRNG+ VT GV++T F  + DHLFRKFHYLPF+
Sbjct: 120 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL 179

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PS EDVYDC+VEHWGLD PLL+HWE   P P P+  E +VCALGL +GLVG ++GT+ II
Sbjct: 180 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII 239

Query: 241 MG 242
            G
Sbjct: 240 KG 241


>gi|11095447 major histocompatibility complex, class II, DQ alpha 2
           [Homo sapiens]
          Length = 255

 Score =  281 bits (720), Expect = 3e-76
 Identities = 135/242 (55%), Positives = 170/242 (70%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           M L   L+LG   L  ++SP       ADH+ SYG  FYQS+G SGQ+THEFD ++ F V
Sbjct: 1   MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DL+  E VW+LP F  F  FDPQ  L  +A  K  L+ ++ +SN + A N  P VTV  K
Sbjct: 61  DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120

Query: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180
             V LGQPN LIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K  YL F+
Sbjct: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180

Query: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240
           PSA+++YDC+VEHWGLD PLL+HWE ++P P  +  ETLVCALGL++GL+G +VGTV II
Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240

Query: 241 MG 242
            G
Sbjct: 241 QG 242


>gi|169218140 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 153

 Score =  190 bits (482), Expect = 1e-48
 Identities = 87/130 (66%), Positives = 104/130 (80%)

Query: 113 PRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFR 172
           P VTV  KS V LGQPNILIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F 
Sbjct: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70

Query: 173 KFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGF 232
           K  YL  +PSAE+ YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG 
Sbjct: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130

Query: 233 LVGTVLIIMG 242
           +VGTV II G
Sbjct: 131 VVGTVFIIRG 140


>gi|239752547 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 130

 Score =  124 bits (310), Expect = 1e-28
 Identities = 68/131 (51%), Positives = 82/131 (62%), Gaps = 1/131 (0%)

Query: 1   MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60
           M L   L+LG   L T++SP       ADH+ SYG   YQSYG SGQ+THEFD ++ F V
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 61  DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120
           DL + E VW LP    F RFDPQ  L  IA +K +L+ L++RSN + A N  P VTV  K
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 121 SRVELGQPNIL 131
           S V LGQPNIL
Sbjct: 120 SPVTLGQPNIL 130


>gi|18765715 major histocompatibility complex, class II, DM alpha
           precursor [Homo sapiens]
          Length = 261

 Score =  102 bits (254), Expect = 3e-22
 Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 11/209 (5%)

Query: 38  FYQSYGASGQFTHEFDEEQLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLD 97
           + Q    S   +  +DE+QLF  D  ++  V RLPEF D+A+   QG    I   K   +
Sbjct: 49  YCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQ--EQGDAPAILFDKEFCE 106

Query: 98  ILVERSNRSRAINVP-----PRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQ 152
            ++++        +P     P   V     +E G+PN L+C V N+FPP++ + W  +  
Sbjct: 107 WMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSV 166

Query: 153 TVTEGVAQTSFYSQPDHL-FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIP 211
            V EG   T F S  D L F+ F YL F P   D++ C V H       + +W  +  + 
Sbjct: 167 PV-EGFGPT-FVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNAL- 223

Query: 212 PPDAMETLVCALGLAIGLVGFLVGTVLII 240
           P D +E ++C +   +G++G +VG VLII
Sbjct: 224 PSDLLENVLCGVAFGLGVLGIIVGIVLII 252


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V PRV V P  +  L   N+L+C V + +P  I + W  NGQ  T GV  T+     D  
Sbjct: 122 VQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWT 181

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L   P   DVY CQVEH  LD+P+   W+ Q         +TL  A G  +GL+
Sbjct: 182 FQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQ---SDSARSKTLTGAGGFVLGLI 238


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P VT+ P     L   N+L+C V + +P  I + W RNGQ  T GV  T      D  
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L   P   DVY C VEH  L +P+   W  Q       A   ++  +G      
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQ----SESAQSKMLSGIG------ 236

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + + +G  +
Sbjct: 237 GFVLGLIFLGLGLII 251


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P VT+ P     L   N+L+C V + +P  I + W RNGQ  T GV  T      D  
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L   P   DVY C VEH  L +P+   W  Q       A   ++  +G      
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQ----SESAQSKMLSGIG------ 236

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + + +G  +
Sbjct: 237 GFVLGLIFLGLGLII 251


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P+VTV P     L   N+L+C V+  +P  I + W RNGQ    GV  T      D  
Sbjct: 124 VQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L  VP + +VY CQVEH  + +PL   W  +       A   ++  +G      
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSAR----SESAQSKMLSGVG------ 233

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + +  G ++
Sbjct: 234 GFVLGLLFLGTGLFI 248


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P+VTV P     L   N+L+C V+  +P  I + W RNGQ    GV  T      D  
Sbjct: 136 VQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 195

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L  VP + +VY CQVEH  + +PL   W  +       A   ++  +G      
Sbjct: 196 FQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSAR----SESAQSKMLSGVG------ 245

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + +  G ++
Sbjct: 246 GFVLGLLFLGTGLFI 260


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score = 74.7 bits (182), Expect = 7e-14
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P+VTV P     L   N+L+C V   +P  I + W RNGQ    GV  T      D  
Sbjct: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L  VP + +VY CQVEH  + +PL   W  +       A   ++  +G      
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAR----SESAQSKMLSGVG------ 233

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + +  G ++
Sbjct: 234 GFVLGLLFLGAGLFI 248


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score = 74.7 bits (182), Expect = 7e-14
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P+VTV P     L   N+L+C V   +P  I + W RNGQ    GV  T      D  
Sbjct: 125 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 184

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L  VP + +VY CQVEH  + +PL   W  +       A   ++  +G      
Sbjct: 185 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAR----SESAQSKMLSGVG------ 234

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + +  G ++
Sbjct: 235 GFVLGLLFLGAGLFI 249


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score = 74.7 bits (182), Expect = 7e-14
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P+VTV P     L   N+L+C V   +P  I + W RNGQ    GV  T      D  
Sbjct: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L  VP + +VY CQVEH  + +PL   W  +       A   ++  +G      
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAR----SESAQSKMLSGVG------ 233

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + +  G ++
Sbjct: 234 GFVLGLLFLGAGLFI 248


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score = 74.3 bits (181), Expect = 9e-14
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P+VTV P     L   N+L+C V   +P  I + W RNGQ    GV  T      D  
Sbjct: 125 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 184

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L  VP + +VY CQVEH  + +PL   W  +       A   ++  +G      
Sbjct: 185 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSAR----SESAQSKMLSGVG------ 234

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + +  G ++
Sbjct: 235 GFVLGLLFLGAGLFI 249


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score = 74.3 bits (181), Expect = 9e-14
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P+VTV P     L   N+L+C V   +P  I + W RNGQ    GV  T      D  
Sbjct: 124 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L  VP + +VY CQVEH  + +PL   W  +       A   ++  +G      
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSAR----SESAQSKMLSGVG------ 233

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + +  G ++
Sbjct: 234 GFVLGLLFLGAGLFI 248


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score = 74.3 bits (181), Expect = 9e-14
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P+VTV P     L   N+L+C V+  +P  I + W RN Q    GV  T      D  
Sbjct: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L  VP + +VY CQVEH  + +PL   W  Q       A   ++  +G      
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQ----SESAQSKMLSGVG------ 233

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + +  G ++
Sbjct: 234 GFVLGLLFLGAGLFI 248


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P VT+ P     L   N+L+C V + +P  I + W RN Q  T GV  T      D  
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L   P   DVY C VEH  L +P+   W  Q       A   ++  +G      
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQ----SESAQSKMLSGIG------ 236

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + + +G  +
Sbjct: 237 GFVLGLIFLGLGLII 251


>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P VT+ P     L   N+L+C V + +P  I + W RN Q  T GV  T      D  
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L   P   DVY C VEH  L +P+   W  Q       A   ++  +G      
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQ----SESAQSKMLSGIG------ 236

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + + +G  +
Sbjct: 237 GFVLGLIFLGLGLII 251


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 111 VPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL 170
           V P VT+ P     L   N+L+C V + +P  I + W RN Q  T GV  T      D  
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186

Query: 171 FRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLV 230
           F+    L   P   DVY C VEH  L  P++  W  Q       A   ++  +G      
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQ----SESAQSKMLSGIG------ 236

Query: 231 GFLVGTVLIIMGTYV 245
           GF++G + + +G  +
Sbjct: 237 GFVLGLIFLGLGLII 251


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,384,834
Number of Sequences: 37866
Number of extensions: 482331
Number of successful extensions: 1163
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 119
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.