Guide to the Human Genome
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Name: LOC100293977 Sequence: fasta or formatted (281aa) NCBI GI: 239758095
Description:

PREDICTED: similar to major histocompatibility complex, class II, DR beta 5

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         14           2
 C cysteine            2.1          6           1
 D aspartate           3.2          9           1
 E glutamate           7.1         20           2
 F phenylalanine       3.6         10           1
 G glycine             7.1         20           2
 H histidine           2.5          7           2
 I isoleucine          4.6         13           2
 K lysine              3.2          9           2
 L leucine            10.0         28           2
 M methionine          2.5          7           1
 N asparagine          2.8          8           1
 P proline             4.6         13           1
 Q glutamine           5.0         14           1
 R arginine            9.3         26           2
 S serine              7.5         21           1
 T threonine           7.1         20           2
 V valine              8.2         23           2
 W tryptophan          2.1          6           1
 Y tyrosine            2.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to major histocompatibility comp... 
LOC100294191          1.000   PREDICTED: similar to major histocompatibility comp...
LOC100294278          0.995   PREDICTED: similar to major histocompatibility comp...
LOC100294115          0.995   PREDICTED: similar to major histocompatibility comp...
LOC100133583          0.989   PREDICTED: similar to major histocompatibility comp...
LOC100294318          0.918   PREDICTED: similar to major histocompatibility comp...
LOC100133583          0.846   PREDICTED: similar to major histocompatibility comp...
LOC100294318          0.837   PREDICTED: similar to major histocompatibility comp...
HLA-DQB1              0.784   major histocompatibility complex, class II, DQ beta...
LOC100290966          0.585   PREDICTED: hypothetical protein XP_002346811 
LOC100294468          0.581   PREDICTED: similar to HLA class II histocompatibili...
HLA-DRB5              0.581   major histocompatibility complex, class II, DR beta ...
HLA-DPB1              0.580   major histocompatibility complex, class II, DP beta ...
HLA-DRB1              0.580   major histocompatibility complex, class II, DR beta...
LOC100294189          0.576   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.576   PREDICTED: similar to HLA class II histocompatibili...
LOC100294276          0.572   PREDICTED: similar to major histocompatibility comp...
LOC100294276          0.561   PREDICTED: similar to major histocompatibility comp...
HLA-DRB4              0.559   major histocompatibility complex, class II, DR beta ...
LOC100294275          0.559   PREDICTED: similar to major histocompatibility comp...
HLA-DRB3              0.554   major histocompatibility complex, class II, DR beta ...
LOC100294275          0.550   PREDICTED: similar to major histocompatibility comp...
LOC100294189          0.539   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.539   PREDICTED: similar to HLA class II histocompatibili...
HLA-DRB4              0.519   PREDICTED: major histocompatibility complex, class ...
HLA-DOB               0.508   major histocompatibility complex, class II, DO beta p...
LOC100294036          0.477   PREDICTED: similar to HLA class II histocompatibili...
LOC100133811          0.413   PREDICTED: similar to HLA class II histocompatibili...
LOC651845             0.303   PREDICTED: similar to MHC class II antigen 
LOC100133661          0.186   PREDICTED: similar to MHC class II antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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