LOC100294317 16648

Name: LOC100294317	Sequence: fasta or formatted (255aa)		NCBI GI: 239740916
Description: PREDICTED: similar to MHC HLA-DQ alpha		Referenced in: HLA and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.7 12 2 C cysteine 1.6 4 1 D aspartate 4.3 11 1 E glutamate 6.7 17 2 F phenylalanine 4.7 12 2 G glycine 7.1 18 2 H histidine 3.1 8 1 I isoleucine 5.5 14 2 K lysine 3.5 9 1 L leucine 11.4 29 2 M methionine 1.6 4 1 N asparagine 4.3 11 1 P proline 5.9 15 2 Q glutamine 2.4 6 1 R arginine 3.5 9 2 S serine 8.6 22 1 T threonine 6.7 17 2 V valine 10.2 26 2 W tryptophan 1.6 4 1 Y tyrosine 2.7 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to MHC HLA-DQ alpha LOC100294224 0.996 PREDICTED: similar to MHC class II antigen LOC731682 0.992 PREDICTED: similar to major histocompatibility comp... LOC731682 0.963 PREDICTED: similar to major histocompatibility comp... LOC100294190 0.963 PREDICTED: similar to major histocompatibility comp... LOC100294162 0.963 PREDICTED: similar to major histocompatibility comp... LOC100294277 0.927 PREDICTED: similar to major histocompatibility comp... LOC100294114 0.927 PREDICTED: similar to major histocompatibility comp... HLA-DQA1 0.900 major histocompatibility complex, class II, DQ alpha... HLA-DQA2 0.890 major histocompatibility complex, class II, DQ alpha... HLA-DPA1 0.553 major histocompatibility complex, class II, DP alpha... HLA-DOA 0.547 major histocompatibility complex, class II, DO alpha ... LOC100133678 0.528 PREDICTED: similar to major histocompatibility comp... HLA-DRA 0.510 major histocompatibility complex, class II, DR alpha... LOC100133763 0.437 PREDICTED: similar to major histocompatibility comp... HLA-DMA 0.154 major histocompatibility complex, class II, DM alpha... LOC100294276 0.091 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.091 PREDICTED: similar to major histocompatibility comp... LOC100293977 0.091 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.091 PREDICTED: similar to major histocompatibility comp... LOC100294468 0.089 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.089 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.089 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.089 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.089 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB1 0.089 major histocompatibility complex, class II, DR beta... LOC100294036 0.089 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB5 0.089 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.087 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.087 PREDICTED: major histocompatibility complex, class ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.