LOC100133583 7720

Name: LOC100133583	Sequence: fasta or formatted (261aa)		NCBI GI: 169168591
Description: PREDICTED: similar to major histocompatibility complex, class II, DR beta 5 isoform 1		Not currently referenced in the text
Other entries for this name: alt prot {281aa} PREDICTED: similar to major histocompatibility complex, class II,...
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 14 2 C cysteine 1.5 4 1 D aspartate 3.4 9 1 E glutamate 6.5 17 2 F phenylalanine 3.8 10 1 G glycine 6.9 18 2 H histidine 3.1 8 2 I isoleucine 4.2 11 2 K lysine 2.7 7 2 L leucine 9.6 25 2 M methionine 2.7 7 1 N asparagine 3.1 8 1 P proline 5.0 13 2 Q glutamine 4.6 12 1 R arginine 8.4 22 2 S serine 6.5 17 1 T threonine 8.0 21 2 V valine 9.2 24 2 W tryptophan 1.9 5 1 Y tyrosine 3.4 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.982 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.970 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.921 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.917 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.917 PREDICTED: similar to major histocompatibility comp... LOC100293977 0.911 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.911 PREDICTED: similar to major histocompatibility comp... HLA-DQB1 0.909 major histocompatibility complex, class II, DQ beta... HLA-DRB5 0.614 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.614 major histocompatibility complex, class II, DR beta ... HLA-DRB1 0.614 major histocompatibility complex, class II, DR beta... LOC100294468 0.614 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.612 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.612 PREDICTED: similar to HLA class II histocompatibili... HLA-DPB1 0.610 major histocompatibility complex, class II, DP beta ... LOC100290966 0.610 PREDICTED: hypothetical protein XP_002346811 LOC100294276 0.596 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.596 PREDICTED: similar to major histocompatibility comp... HLA-DRB3 0.589 major histocompatibility complex, class II, DR beta ... LOC100294275 0.589 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.585 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.571 PREDICTED: major histocompatibility complex, class ... LOC100294189 0.569 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.569 PREDICTED: similar to HLA class II histocompatibili... HLA-DOB 0.545 major histocompatibility complex, class II, DO beta p... LOC100294036 0.504 PREDICTED: similar to HLA class II histocompatibili... LOC100133811 0.439 PREDICTED: similar to HLA class II histocompatibili... LOC651845 0.323 PREDICTED: similar to MHC class II antigen LOC100133661 0.219 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.