HLA-DQA1 9887

Name: HLA-DQA1	Sequence: fasta or formatted (255aa)		NCBI GI: 18426975
Description: major histocompatibility complex, class II, DQ alpha 1 precursor		Referenced in: HLA and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 15 2 C cysteine 2.0 5 1 D aspartate 4.3 11 1 E glutamate 6.3 16 1 F phenylalanine 5.1 13 2 G glycine 8.2 21 2 H histidine 2.7 7 1 I isoleucine 5.1 13 2 K lysine 3.9 10 1 L leucine 10.2 26 3 M methionine 2.4 6 1 N asparagine 4.3 11 1 P proline 5.9 15 2 Q glutamine 3.5 9 1 R arginine 2.4 6 1 S serine 7.8 20 1 T threonine 6.3 16 2 V valine 9.0 23 2 W tryptophan 2.0 5 1 Y tyrosine 2.7 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 major histocompatibility complex, class II, DQ alpha... LOC100294317 0.888 PREDICTED: similar to MHC HLA-DQ alpha LOC731682 0.888 PREDICTED: similar to major histocompatibility comp... LOC100294224 0.884 PREDICTED: similar to MHC class II antigen LOC731682 0.880 PREDICTED: similar to major histocompatibility comp... LOC100294190 0.880 PREDICTED: similar to major histocompatibility comp... LOC100294162 0.880 PREDICTED: similar to major histocompatibility comp... HLA-DQA2 0.878 major histocompatibility complex, class II, DQ alpha... LOC100294277 0.860 PREDICTED: similar to major histocompatibility comp... LOC100294114 0.860 PREDICTED: similar to major histocompatibility comp... HLA-DPA1 0.533 major histocompatibility complex, class II, DP alpha... HLA-DOA 0.527 major histocompatibility complex, class II, DO alpha ... LOC100133678 0.517 PREDICTED: similar to major histocompatibility comp... HLA-DRA 0.507 major histocompatibility complex, class II, DR alpha... LOC100133763 0.381 PREDICTED: similar to major histocompatibility comp... HLA-DMA 0.150 major histocompatibility complex, class II, DM alpha... LOC100293977 0.098 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.098 PREDICTED: similar to major histocompatibility comp... LOC100294468 0.096 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.096 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.096 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.096 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.096 PREDICTED: similar to HLA class II histocompatibili... LOC100294036 0.096 PREDICTED: similar to HLA class II histocompatibili... LOC100294318 0.096 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.096 PREDICTED: similar to major histocompatibility comp... HLA-DRB5 0.096 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.094 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.094 PREDICTED: major histocompatibility complex, class ... LOC100294275 0.094 PREDICTED: similar to major histocompatibility comp... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.