HLA-DOA 28833

Name: HLA-DOA	Sequence: fasta or formatted (250aa)		NCBI GI: 4504401
Description: major histocompatibility complex, class II, DO alpha precursor		Referenced in: HLA and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 20 2 C cysteine 1.2 3 1 D aspartate 4.8 12 1 E glutamate 5.2 13 2 F phenylalanine 5.6 14 1 G glycine 8.0 20 2 H histidine 3.2 8 1 I isoleucine 5.6 14 2 K lysine 2.4 6 2 L leucine 11.2 28 2 M methionine 2.0 5 1 N asparagine 2.4 6 1 P proline 7.6 19 3 Q glutamine 4.4 11 1 R arginine 4.8 12 1 S serine 5.6 14 2 T threonine 4.8 12 1 V valine 8.8 22 1 W tryptophan 1.6 4 1 Y tyrosine 2.8 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 major histocompatibility complex, class II, DO alpha ... LOC100294317 0.553 PREDICTED: similar to MHC HLA-DQ alpha LOC731682 0.549 PREDICTED: similar to major histocompatibility comp... LOC731682 0.549 PREDICTED: similar to major histocompatibility comp... LOC100294224 0.549 PREDICTED: similar to MHC class II antigen LOC100294190 0.549 PREDICTED: similar to major histocompatibility comp... LOC100294162 0.549 PREDICTED: similar to major histocompatibility comp... HLA-DQA1 0.541 major histocompatibility complex, class II, DQ alpha... LOC100294277 0.533 PREDICTED: similar to major histocompatibility comp... LOC100294114 0.533 PREDICTED: similar to major histocompatibility comp... HLA-DPA1 0.531 major histocompatibility complex, class II, DP alpha... HLA-DRA 0.531 major histocompatibility complex, class II, DR alpha... HLA-DQA2 0.527 major histocompatibility complex, class II, DQ alpha... LOC100133678 0.340 PREDICTED: similar to major histocompatibility comp... LOC100133763 0.204 PREDICTED: similar to major histocompatibility comp... HLA-DMA 0.158 major histocompatibility complex, class II, DM alpha... HLA-DPB1 0.113 major histocompatibility complex, class II, DP beta ... LOC100293977 0.107 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.107 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.103 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.103 PREDICTED: major histocompatibility complex, class ... LOC100290966 0.103 PREDICTED: hypothetical protein XP_002346811 LOC100294276 0.103 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.103 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.101 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.101 PREDICTED: similar to major histocompatibility comp... HLA-DRB5 0.101 major histocompatibility complex, class II, DR beta ... LOC100133583 0.101 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.101 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.101 PREDICTED: similar to major histocompatibility comp... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.