LOC100294318 16650

Name: LOC100294318	Sequence: fasta or formatted (261aa)		NCBI GI: 239740920
Description: PREDICTED: similar to major histocompatibility complex, class II, DQ beta 1 isoform 2		Not currently referenced in the text
Other entries for this name: alt prot {281aa} PREDICTED: similar to major histocompatibility complex, class II,...
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 13 2 C cysteine 1.5 4 1 D aspartate 3.4 9 1 E glutamate 6.9 18 2 F phenylalanine 3.4 9 1 G glycine 6.9 18 2 H histidine 3.1 8 2 I isoleucine 4.6 12 2 K lysine 2.7 7 2 L leucine 10.0 26 2 M methionine 2.7 7 1 N asparagine 3.4 9 1 P proline 5.0 13 2 Q glutamine 4.6 12 1 R arginine 8.4 22 2 S serine 5.7 15 1 T threonine 8.0 21 2 V valine 8.8 23 2 W tryptophan 1.9 5 1 Y tyrosine 3.8 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.986 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.978 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.908 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.902 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.902 PREDICTED: similar to major histocompatibility comp... HLA-DQB1 0.900 major histocompatibility complex, class II, DQ beta... LOC100293977 0.898 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.898 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.604 major histocompatibility complex, class II, DR beta ... LOC100294468 0.604 PREDICTED: similar to HLA class II histocompatibili... LOC100290966 0.602 PREDICTED: hypothetical protein XP_002346811 HLA-DRB5 0.600 major histocompatibility complex, class II, DR beta ... LOC100294189 0.600 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.600 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB1 0.598 major histocompatibility complex, class II, DR beta... HLA-DPB1 0.596 major histocompatibility complex, class II, DP beta ... LOC100294276 0.592 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.584 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.578 PREDICTED: similar to major histocompatibility comp... HLA-DRB3 0.576 major histocompatibility complex, class II, DR beta ... LOC100294275 0.576 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.561 PREDICTED: major histocompatibility complex, class ... LOC100294189 0.557 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.557 PREDICTED: similar to HLA class II histocompatibili... HLA-DOB 0.531 major histocompatibility complex, class II, DO beta p... LOC100294036 0.490 PREDICTED: similar to HLA class II histocompatibili... LOC100133811 0.437 PREDICTED: similar to HLA class II histocompatibili... LOC651845 0.314 PREDICTED: similar to MHC class II antigen LOC100133661 0.220 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.