LOC100294114 16461

Name: LOC100294114	Sequence: fasta or formatted (254aa)		NCBI GI: 239513953
Description: PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.1 13 2 C cysteine 2.0 5 1 D aspartate 3.9 10 1 E glutamate 5.9 15 2 F phenylalanine 4.3 11 2 G glycine 7.5 19 2 H histidine 3.1 8 1 I isoleucine 5.1 13 2 K lysine 3.9 10 1 L leucine 11.8 30 2 M methionine 1.6 4 1 N asparagine 4.3 11 1 P proline 5.9 15 2 Q glutamine 2.8 7 1 R arginine 2.8 7 1 S serine 9.1 23 1 T threonine 6.3 16 2 V valine 10.2 26 2 W tryptophan 1.6 4 1 Y tyrosine 2.8 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to major histocompatibility comp... LOC100294277 1.000 PREDICTED: similar to major histocompatibility comp... LOC731682 0.935 PREDICTED: similar to major histocompatibility comp... LOC100294190 0.935 PREDICTED: similar to major histocompatibility comp... LOC100294162 0.935 PREDICTED: similar to major histocompatibility comp... LOC100294317 0.929 PREDICTED: similar to MHC HLA-DQ alpha LOC731682 0.927 PREDICTED: similar to major histocompatibility comp... LOC100294224 0.923 PREDICTED: similar to MHC class II antigen HLA-DQA1 0.874 major histocompatibility complex, class II, DQ alpha... HLA-DQA2 0.855 major histocompatibility complex, class II, DQ alpha... LOC100133678 0.556 PREDICTED: similar to major histocompatibility comp... HLA-DPA1 0.542 major histocompatibility complex, class II, DP alpha... HLA-DOA 0.527 major histocompatibility complex, class II, DO alpha ... LOC100133763 0.489 PREDICTED: similar to major histocompatibility comp... HLA-DRA 0.487 major histocompatibility complex, class II, DR alpha... HLA-DMA 0.132 major histocompatibility complex, class II, DM alpha... LOC100294036 0.092 PREDICTED: similar to HLA class II histocompatibili... LOC100294468 0.092 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.092 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.092 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.092 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.092 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB5 0.092 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.092 major histocompatibility complex, class II, DR beta ... LOC100293977 0.092 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.092 PREDICTED: major histocompatibility complex, class ... LOC100294275 0.092 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.092 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.092 PREDICTED: similar to major histocompatibility comp... LOC100290966 0.090 PREDICTED: hypothetical protein XP_002346811 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.