LOC100133678 9267

Name: LOC100133678	Sequence: fasta or formatted (153aa)		NCBI GI: 169218140
Description: PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1, partial		Referenced in: HLA and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 2.6 4 1 C cysteine 3.3 5 2 D aspartate 2.6 4 1 E glutamate 7.2 11 2 F phenylalanine 4.6 7 2 G glycine 7.2 11 1 H histidine 3.9 6 1 I isoleucine 5.9 9 2 K lysine 3.9 6 1 L leucine 11.8 18 2 M methionine 0.7 1 1 N asparagine 2.6 4 1 P proline 7.2 11 2 Q glutamine 2.0 3 1 R arginine 2.0 3 1 S serine 10.5 16 1 T threonine 7.2 11 2 V valine 11.8 18 2 W tryptophan 2.0 3 1 Y tyrosine 1.3 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to major histocompatibility comp... LOC100294277 0.941 PREDICTED: similar to major histocompatibility comp... LOC100294114 0.941 PREDICTED: similar to major histocompatibility comp... LOC731682 0.903 PREDICTED: similar to major histocompatibility comp... LOC100294190 0.903 PREDICTED: similar to major histocompatibility comp... LOC100294162 0.903 PREDICTED: similar to major histocompatibility comp... LOC100294317 0.897 PREDICTED: similar to MHC HLA-DQ alpha LOC731682 0.897 PREDICTED: similar to major histocompatibility comp... HLA-DQA1 0.890 major histocompatibility complex, class II, DQ alpha... LOC100294224 0.890 PREDICTED: similar to MHC class II antigen HLA-DQA2 0.876 major histocompatibility complex, class II, DQ alpha... HLA-DRA 0.610 major histocompatibility complex, class II, DR alpha... HLA-DPA1 0.607 major histocompatibility complex, class II, DP alpha... HLA-DOA 0.569 major histocompatibility complex, class II, DO alpha ... HLA-DMA 0.203 major histocompatibility complex, class II, DM alpha... LOC100294036 0.162 PREDICTED: similar to HLA class II histocompatibili... LOC100294468 0.155 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.155 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.155 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.155 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.155 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB5 0.155 major histocompatibility complex, class II, DR beta ... HLA-DMB 0.155 major histocompatibility complex, class II, DM beta p... HLA-DRB4 0.155 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.155 PREDICTED: major histocompatibility complex, class ... LOC100294275 0.155 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.155 PREDICTED: similar to major histocompatibility comp... LOC100290966 0.152 PREDICTED: hypothetical protein XP_002346811 LOC100294276 0.152 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.152 PREDICTED: similar to major histocompatibility comp... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.