Guide to the Human Genome
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Name: LOC100133678 Sequence: fasta or formatted (153aa) NCBI GI: 169218140
Description:

PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1, partial

Referenced in:

HLA and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.6          4           1
 C cysteine            3.3          5           2
 D aspartate           2.6          4           1
 E glutamate           7.2         11           2
 F phenylalanine       4.6          7           2
 G glycine             7.2         11           1
 H histidine           3.9          6           1
 I isoleucine          5.9          9           2
 K lysine              3.9          6           1
 L leucine            11.8         18           2
 M methionine          0.7          1           1
 N asparagine          2.6          4           1
 P proline             7.2         11           2
 Q glutamine           2.0          3           1
 R arginine            2.0          3           1
 S serine             10.5         16           1
 T threonine           7.2         11           2
 V valine             11.8         18           2
 W tryptophan          2.0          3           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to major histocompatibility comp... 
LOC100294277          0.941   PREDICTED: similar to major histocompatibility comp...
LOC100294114          0.941   PREDICTED: similar to major histocompatibility comp...
LOC731682             0.903   PREDICTED: similar to major histocompatibility comp...
LOC100294190          0.903   PREDICTED: similar to major histocompatibility comp...
LOC100294162          0.903   PREDICTED: similar to major histocompatibility comp...
LOC100294317          0.897   PREDICTED: similar to MHC HLA-DQ alpha 
LOC731682             0.897   PREDICTED: similar to major histocompatibility comp...
HLA-DQA1              0.890   major histocompatibility complex, class II, DQ alpha...
LOC100294224          0.890   PREDICTED: similar to MHC class II antigen 
HLA-DQA2              0.876   major histocompatibility complex, class II, DQ alpha...
HLA-DRA               0.610   major histocompatibility complex, class II, DR alpha...
HLA-DPA1              0.607   major histocompatibility complex, class II, DP alpha...
HLA-DOA               0.569   major histocompatibility complex, class II, DO alpha ...
HLA-DMA               0.203   major histocompatibility complex, class II, DM alpha...
LOC100294036          0.162   PREDICTED: similar to HLA class II histocompatibili...
LOC100294468          0.155   PREDICTED: similar to HLA class II histocompatibili...
LOC100294189          0.155   PREDICTED: similar to HLA class II histocompatibili...
LOC100294189          0.155   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.155   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.155   PREDICTED: similar to HLA class II histocompatibili...
HLA-DRB5              0.155   major histocompatibility complex, class II, DR beta ...
HLA-DMB               0.155   major histocompatibility complex, class II, DM beta p...
HLA-DRB4              0.155   major histocompatibility complex, class II, DR beta ...
HLA-DRB4              0.155   PREDICTED: major histocompatibility complex, class ...
LOC100294275          0.155   PREDICTED: similar to major histocompatibility comp...
LOC100294275          0.155   PREDICTED: similar to major histocompatibility comp...
LOC100290966          0.152   PREDICTED: hypothetical protein XP_002346811 
LOC100294276          0.152   PREDICTED: similar to major histocompatibility comp...
LOC100294276          0.152   PREDICTED: similar to major histocompatibility comp...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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