HLA-DPA1 23977

Name: HLA-DPA1	Sequence: fasta or formatted (260aa)		NCBI GI: 24797074
Description: major histocompatibility complex, class II, DP alpha 1 precursor		Referenced in: HLA and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.9 18 2 C cysteine 1.5 4 1 D aspartate 5.0 13 1 E glutamate 8.1 21 2 F phenylalanine 6.9 18 2 G glycine 6.2 16 2 H histidine 4.2 11 1 I isoleucine 5.0 13 2 K lysine 3.1 8 2 L leucine 11.9 31 2 M methionine 1.9 5 1 N asparagine 3.8 10 3 P proline 5.8 15 2 Q glutamine 3.8 10 1 R arginine 4.2 11 1 S serine 3.8 10 1 T threonine 6.9 18 2 V valine 7.3 19 1 W tryptophan 1.5 4 1 Y tyrosine 1.9 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 major histocompatibility complex, class II, DP alpha... HLA-DRA 0.547 major histocompatibility complex, class II, DR alpha... LOC100294317 0.533 PREDICTED: similar to MHC HLA-DQ alpha LOC731682 0.531 PREDICTED: similar to major histocompatibility comp... LOC100294190 0.531 PREDICTED: similar to major histocompatibility comp... LOC100294162 0.531 PREDICTED: similar to major histocompatibility comp... LOC731682 0.529 PREDICTED: similar to major histocompatibility comp... LOC100294224 0.529 PREDICTED: similar to MHC class II antigen HLA-DQA1 0.522 major histocompatibility complex, class II, DQ alpha... LOC100294277 0.522 PREDICTED: similar to major histocompatibility comp... LOC100294114 0.522 PREDICTED: similar to major histocompatibility comp... HLA-DQA2 0.518 major histocompatibility complex, class II, DQ alpha... HLA-DOA 0.506 major histocompatibility complex, class II, DO alpha ... LOC100133678 0.345 PREDICTED: similar to major histocompatibility comp... LOC100133763 0.196 PREDICTED: similar to major histocompatibility comp... HLA-DMA 0.141 major histocompatibility complex, class II, DM alpha... HLA-DPB1 0.106 major histocompatibility complex, class II, DP beta ... HLA-DMB 0.104 major histocompatibility complex, class II, DM beta p... LOC100293977 0.096 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.096 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.094 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.092 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.092 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.092 PREDICTED: similar to major histocompatibility comp... LOC100290966 0.090 PREDICTED: hypothetical protein XP_002346811 LOC100294276 0.090 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.090 PREDICTED: similar to major histocompatibility comp... LOC100294036 0.088 PREDICTED: similar to HLA class II histocompatibili... LOC100294468 0.088 PREDICTED: similar to HLA class II histocompatibili... LOC100294318 0.088 PREDICTED: similar to major histocompatibility comp... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.