Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HLA-DQA2 Sequence: fasta or formatted (255aa) NCBI GI: 11095447
Description:

major histocompatibility complex, class II, DQ alpha 2

Referenced in:

HLA and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         14           2
 C cysteine            1.6          4           1
 D aspartate           4.3         11           1
 E glutamate           7.1         18           2
 F phenylalanine       5.9         15           2
 G glycine             7.5         19           2
 H histidine           3.5          9           1
 I isoleucine          4.7         12           2
 K lysine              3.5          9           1
 L leucine            11.0         28           3
 M methionine          3.1          8           2
 N asparagine          3.5          9           1
 P proline             5.5         14           2
 Q glutamine           3.1          8           1
 R arginine            1.6          4           1
 S serine              9.0         23           1
 T threonine           6.7         17           1
 V valine              9.0         23           2
 W tryptophan          1.6          4           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   major histocompatibility complex, class II, DQ alpha... 
LOC100294317          0.887   PREDICTED: similar to MHC HLA-DQ alpha 
HLA-DQA1              0.887   major histocompatibility complex, class II, DQ alpha...
LOC731682             0.885   PREDICTED: similar to major histocompatibility comp...
LOC100294224          0.883   PREDICTED: similar to MHC class II antigen 
LOC731682             0.879   PREDICTED: similar to major histocompatibility comp...
LOC100294190          0.879   PREDICTED: similar to major histocompatibility comp...
LOC100294162          0.879   PREDICTED: similar to major histocompatibility comp...
LOC100294277          0.850   PREDICTED: similar to major histocompatibility comp...
LOC100294114          0.850   PREDICTED: similar to major histocompatibility comp...
HLA-DPA1              0.534   major histocompatibility complex, class II, DP alpha...
HLA-DOA               0.518   major histocompatibility complex, class II, DO alpha ...
LOC100133678          0.514   PREDICTED: similar to major histocompatibility comp...
HLA-DRA               0.498   major histocompatibility complex, class II, DR alpha...
LOC100133763          0.370   PREDICTED: similar to major histocompatibility comp...
HLA-DMA               0.152   major histocompatibility complex, class II, DM alpha...
HLA-DRB5              0.091   major histocompatibility complex, class II, DR beta ...
LOC100294036          0.091   PREDICTED: similar to HLA class II histocompatibili...
LOC100294468          0.091   PREDICTED: similar to HLA class II histocompatibili...
LOC100294189          0.091   PREDICTED: similar to HLA class II histocompatibili...
LOC100294189          0.091   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.091   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.091   PREDICTED: similar to HLA class II histocompatibili...
HLA-DRB4              0.089   major histocompatibility complex, class II, DR beta ...
LOC100293977          0.089   PREDICTED: similar to major histocompatibility comp...
HLA-DRB4              0.089   PREDICTED: major histocompatibility complex, class ...
LOC100294275          0.089   PREDICTED: similar to major histocompatibility comp...
LOC100294275          0.089   PREDICTED: similar to major histocompatibility comp...
LOC100294191          0.089   PREDICTED: similar to major histocompatibility comp...
LOC100290966          0.089   PREDICTED: hypothetical protein XP_002346811 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press