HLA-DPB1 23978

Name: HLA-DPB1	Sequence: fasta or formatted (258aa)		NCBI GI: 24797076
Description: major histocompatibility complex, class II, DP beta 1 precursor		Referenced in: HLA and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.2 16 2 C cysteine 1.9 5 1 D aspartate 3.5 9 1 E glutamate 6.2 16 2 F phenylalanine 4.3 11 1 G glycine 7.8 20 2 H histidine 2.3 6 2 I isoleucine 3.1 8 2 K lysine 3.1 8 2 L leucine 8.9 23 2 M methionine 3.1 8 2 N asparagine 3.9 10 1 P proline 4.3 11 1 Q glutamine 6.6 17 2 R arginine 8.1 21 2 S serine 5.8 15 1 T threonine 6.6 17 1 V valine 9.7 25 2 W tryptophan 1.6 4 1 Y tyrosine 3.1 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 major histocompatibility complex, class II, DP beta ... LOC100293977 0.634 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.634 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.628 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.628 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.628 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.620 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.608 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.608 PREDICTED: similar to major histocompatibility comp... HLA-DRB1 0.606 major histocompatibility complex, class II, DR beta... HLA-DQB1 0.604 major histocompatibility complex, class II, DQ beta... LOC100294189 0.598 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.598 PREDICTED: similar to HLA class II histocompatibili... LOC100294275 0.586 PREDICTED: similar to major histocompatibility comp... LOC100290966 0.586 PREDICTED: hypothetical protein XP_002346811 LOC100294275 0.582 PREDICTED: similar to major histocompatibility comp... HLA-DRB3 0.580 major histocompatibility complex, class II, DR beta ... LOC100294468 0.578 PREDICTED: similar to HLA class II histocompatibili... LOC100294276 0.576 PREDICTED: similar to major histocompatibility comp... HLA-DRB5 0.576 major histocompatibility complex, class II, DR beta ... LOC100294189 0.576 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.576 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB4 0.566 major histocompatibility complex, class II, DR beta ... LOC100294276 0.566 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.550 PREDICTED: major histocompatibility complex, class ... LOC100294036 0.500 PREDICTED: similar to HLA class II histocompatibili... HLA-DOB 0.496 major histocompatibility complex, class II, DO beta p... LOC100133811 0.468 PREDICTED: similar to HLA class II histocompatibili... LOC651845 0.304 PREDICTED: similar to MHC class II antigen LOC100133661 0.186 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.