Guide to the Human Genome
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Name: LOC100294190 Sequence: fasta or formatted (254aa) NCBI GI: 239740747
Description:

PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         13           2
 C cysteine            1.6          4           1
 D aspartate           4.3         11           1
 E glutamate           6.7         17           2
 F phenylalanine       4.7         12           2
 G glycine             7.1         18           2
 H histidine           3.5          9           1
 I isoleucine          5.5         14           2
 K lysine              3.9         10           1
 L leucine            12.2         31           2
 M methionine          1.6          4           1
 N asparagine          4.3         11           1
 P proline             5.9         15           2
 Q glutamine           2.0          5           1
 R arginine            2.8          7           1
 S serine              8.3         21           1
 T threonine           6.7         17           2
 V valine              9.8         25           2
 W tryptophan          1.6          4           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to major histocompatibility comp... 
LOC731682             1.000   PREDICTED: similar to major histocompatibility comp...
LOC100294162          1.000   PREDICTED: similar to major histocompatibility comp...
LOC100294317          0.967   PREDICTED: similar to MHC HLA-DQ alpha 
LOC731682             0.965   PREDICTED: similar to major histocompatibility comp...
LOC100294224          0.963   PREDICTED: similar to MHC class II antigen 
LOC100294277          0.937   PREDICTED: similar to major histocompatibility comp...
LOC100294114          0.937   PREDICTED: similar to major histocompatibility comp...
HLA-DQA1              0.896   major histocompatibility complex, class II, DQ alpha...
HLA-DQA2              0.886   major histocompatibility complex, class II, DQ alpha...
HLA-DPA1              0.553   major histocompatibility complex, class II, DP alpha...
HLA-DOA               0.545   major histocompatibility complex, class II, DO alpha ...
LOC100133678          0.535   PREDICTED: similar to major histocompatibility comp...
HLA-DRA               0.502   major histocompatibility complex, class II, DR alpha...
LOC100133763          0.441   PREDICTED: similar to major histocompatibility comp...
HLA-DMA               0.153   major histocompatibility complex, class II, DM alpha...
LOC100293977          0.090   PREDICTED: similar to major histocompatibility comp...
LOC100294468          0.090   PREDICTED: similar to HLA class II histocompatibili...
LOC100294191          0.090   PREDICTED: similar to major histocompatibility comp...
LOC100294189          0.090   PREDICTED: similar to HLA class II histocompatibili...
LOC100294189          0.090   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.090   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.090   PREDICTED: similar to HLA class II histocompatibili...
LOC100294276          0.090   PREDICTED: similar to major histocompatibility comp...
LOC100294276          0.090   PREDICTED: similar to major histocompatibility comp...
LOC100294036          0.090   PREDICTED: similar to HLA class II histocompatibili...
HLA-DRB5              0.090   major histocompatibility complex, class II, DR beta ...
HLA-DRB4              0.088   major histocompatibility complex, class II, DR beta ...
HLA-DRB4              0.088   PREDICTED: major histocompatibility complex, class ...
LOC100290966          0.088   PREDICTED: hypothetical protein XP_002346811 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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