LOC100294276 16620

Name: LOC100294276	Sequence: fasta or formatted (267aa)		NCBI GI: 239740859
Description: PREDICTED: similar to major histocompatibility complex, class II, DR beta 3 isoform 1		Not currently referenced in the text
Other entries for this name: alt prot {266aa} PREDICTED: similar to major histocompatibility complex, class II,...
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.0 8 1 C cysteine 2.6 7 1 D aspartate 3.0 8 1 E glutamate 6.4 17 2 F phenylalanine 5.2 14 2 G glycine 9.0 24 2 H histidine 3.4 9 2 I isoleucine 1.1 3 1 K lysine 3.0 8 1 L leucine 10.1 27 2 M methionine 1.9 5 1 N asparagine 3.7 10 1 P proline 4.5 12 1 Q glutamine 4.5 12 1 R arginine 7.9 21 2 S serine 7.9 21 2 T threonine 6.7 18 1 V valine 10.9 29 2 W tryptophan 1.9 5 1 Y tyrosine 3.4 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.953 PREDICTED: similar to major histocompatibility comp... LOC100290966 0.913 PREDICTED: hypothetical protein XP_002346811 LOC100294275 0.898 PREDICTED: similar to major histocompatibility comp... HLA-DRB1 0.892 major histocompatibility complex, class II, DR beta... HLA-DRB3 0.872 major histocompatibility complex, class II, DR beta ... LOC100294275 0.868 PREDICTED: similar to major histocompatibility comp... LOC100294189 0.853 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.853 PREDICTED: similar to HLA class II histocompatibili... LOC100294468 0.845 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB5 0.819 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.813 major histocompatibility complex, class II, DR beta ... LOC100294189 0.751 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.751 PREDICTED: similar to HLA class II histocompatibili... LOC100294036 0.730 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB4 0.721 PREDICTED: major histocompatibility complex, class ... LOC100293977 0.579 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.579 PREDICTED: similar to major histocompatibility comp... LOC100133811 0.575 PREDICTED: similar to HLA class II histocompatibili... LOC100133583 0.575 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.574 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.574 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.560 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.560 PREDICTED: similar to major histocompatibility comp... HLA-DQB1 0.557 major histocompatibility complex, class II, DQ beta... LOC100294318 0.557 PREDICTED: similar to major histocompatibility comp... HLA-DPB1 0.534 major histocompatibility complex, class II, DP beta ... HLA-DOB 0.474 major histocompatibility complex, class II, DO beta p... LOC651845 0.434 PREDICTED: similar to MHC class II antigen LOC100133661 0.304 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.