LOC731682 9228

Name: LOC731682	Sequence: fasta or formatted (254aa)		NCBI GI: 169217612
Description: PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 isoform 1		Referenced in: HLA and Related Proteins
Other entries for this name: alt prot [255aa] PREDICTED: similar to major histocompatibility complex, class II,...
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.1 13 2 C cysteine 1.6 4 1 D aspartate 4.3 11 1 E glutamate 6.7 17 2 F phenylalanine 4.7 12 2 G glycine 7.1 18 2 H histidine 3.5 9 1 I isoleucine 5.5 14 2 K lysine 3.9 10 1 L leucine 12.2 31 2 M methionine 1.6 4 1 N asparagine 4.3 11 1 P proline 5.9 15 2 Q glutamine 2.0 5 1 R arginine 2.8 7 1 S serine 8.3 21 1 T threonine 6.7 17 2 V valine 9.8 25 2 W tryptophan 1.6 4 1 Y tyrosine 2.4 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to major histocompatibility comp... LOC100294190 1.000 PREDICTED: similar to major histocompatibility comp... LOC100294162 1.000 PREDICTED: similar to major histocompatibility comp... LOC100294317 0.967 PREDICTED: similar to MHC HLA-DQ alpha LOC731682 0.965 PREDICTED: similar to major histocompatibility comp... LOC100294224 0.963 PREDICTED: similar to MHC class II antigen LOC100294277 0.937 PREDICTED: similar to major histocompatibility comp... LOC100294114 0.937 PREDICTED: similar to major histocompatibility comp... HLA-DQA1 0.896 major histocompatibility complex, class II, DQ alpha... HLA-DQA2 0.886 major histocompatibility complex, class II, DQ alpha... HLA-DPA1 0.553 major histocompatibility complex, class II, DP alpha... HLA-DOA 0.545 major histocompatibility complex, class II, DO alpha ... LOC100133678 0.535 PREDICTED: similar to major histocompatibility comp... HLA-DRA 0.502 major histocompatibility complex, class II, DR alpha... LOC100133763 0.441 PREDICTED: similar to major histocompatibility comp... HLA-DMA 0.153 major histocompatibility complex, class II, DM alpha... LOC100293977 0.090 PREDICTED: similar to major histocompatibility comp... LOC100294468 0.090 PREDICTED: similar to HLA class II histocompatibili... LOC100294191 0.090 PREDICTED: similar to major histocompatibility comp... LOC100294189 0.090 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.090 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.090 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.090 PREDICTED: similar to HLA class II histocompatibili... LOC100294276 0.090 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.090 PREDICTED: similar to major histocompatibility comp... LOC100294036 0.090 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB5 0.090 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.088 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.088 PREDICTED: major histocompatibility complex, class ... LOC100290966 0.088 PREDICTED: hypothetical protein XP_002346811 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.