HLA-DMA 10059

Name: HLA-DMA	Sequence: fasta or formatted (261aa)		NCBI GI: 18765715
Description: major histocompatibility complex, class II, DM alpha precursor		Referenced in: HLA and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.1 16 2 C cysteine 2.3 6 1 D aspartate 5.7 15 2 E glutamate 5.4 14 1 F phenylalanine 8.0 21 3 G glycine 6.9 18 1 H histidine 2.7 7 2 I isoleucine 5.4 14 2 K lysine 2.3 6 1 L leucine 10.7 28 2 M methionine 1.9 5 1 N asparagine 3.4 9 1 P proline 9.2 24 2 Q glutamine 5.0 13 2 R arginine 2.3 6 1 S serine 5.7 15 1 T threonine 4.2 11 1 V valine 7.7 20 1 W tryptophan 2.7 7 1 Y tyrosine 2.3 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 major histocompatibility complex, class II, DM alpha... HLA-DOA 0.146 major histocompatibility complex, class II, DO alpha ... LOC731682 0.144 PREDICTED: similar to major histocompatibility comp... LOC100294317 0.144 PREDICTED: similar to MHC HLA-DQ alpha LOC100294224 0.144 PREDICTED: similar to MHC class II antigen HLA-DQA2 0.142 major histocompatibility complex, class II, DQ alpha... LOC731682 0.142 PREDICTED: similar to major histocompatibility comp... LOC100294190 0.142 PREDICTED: similar to major histocompatibility comp... LOC100294162 0.142 PREDICTED: similar to major histocompatibility comp... HLA-DQA1 0.142 major histocompatibility complex, class II, DQ alpha... HLA-DPA1 0.137 major histocompatibility complex, class II, DP alpha... HLA-DRA 0.131 major histocompatibility complex, class II, DR alpha... LOC100294277 0.123 PREDICTED: similar to major histocompatibility comp... LOC100294114 0.123 PREDICTED: similar to major histocompatibility comp... LOC100133678 0.112 PREDICTED: similar to major histocompatibility comp... HLA-DMB 0.046 major histocompatibility complex, class II, DM beta p... LOC100290481 0.042 PREDICTED: hypothetical protein XP_002348153 B2M 0.038 beta-2-microglobulin precursor LOC100294318 0.036 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.036 PREDICTED: similar to major histocompatibility comp... IGLL1 0.036 immunoglobulin lambda-like polypeptide 1 isoform a p... LOC100133583 0.032 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.032 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.032 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.032 PREDICTED: similar to major histocompatibility comp... LOC100293977 0.032 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.032 PREDICTED: similar to major histocompatibility comp... HLA-DRB3 0.030 major histocompatibility complex, class II, DR beta ... LOC100294275 0.030 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.030 PREDICTED: similar to major histocompatibility comp... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.