LOC100294275 16618

Name: LOC100294275	Sequence: fasta or formatted (267aa)		NCBI GI: 239740855
Description: PREDICTED: similar to major histocompatibility complex, class II, DR beta 3 isoform 1		Not currently referenced in the text
Other entries for this name: alt prot {266aa} PREDICTED: similar to major histocompatibility complex, class II,...
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.5 12 2 C cysteine 1.9 5 1 D aspartate 2.6 7 1 E glutamate 6.7 18 2 F phenylalanine 5.6 15 2 G glycine 9.4 25 2 H histidine 3.4 9 2 I isoleucine 1.1 3 1 K lysine 3.4 9 1 L leucine 10.9 29 2 M methionine 1.5 4 1 N asparagine 3.4 9 1 P proline 3.7 10 1 Q glutamine 5.6 15 1 R arginine 7.1 19 2 S serine 8.6 23 2 T threonine 6.0 16 1 V valine 9.4 25 2 W tryptophan 1.9 5 1 Y tyrosine 3.4 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.966 PREDICTED: similar to major histocompatibility comp... HLA-DRB3 0.914 major histocompatibility complex, class II, DR beta ... LOC100294276 0.908 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.878 PREDICTED: similar to major histocompatibility comp... LOC100294189 0.874 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.874 PREDICTED: similar to HLA class II histocompatibili... LOC100290966 0.872 PREDICTED: hypothetical protein XP_002346811 HLA-DRB1 0.866 major histocompatibility complex, class II, DR beta... LOC100294468 0.847 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB5 0.832 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.823 major histocompatibility complex, class II, DR beta ... LOC100294189 0.784 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.784 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB4 0.740 PREDICTED: major histocompatibility complex, class ... LOC100294036 0.737 PREDICTED: similar to HLA class II histocompatibili... LOC100133811 0.594 PREDICTED: similar to HLA class II histocompatibili... HLA-DQB1 0.574 major histocompatibility complex, class II, DQ beta... LOC100293977 0.574 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.574 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.571 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.571 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.569 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.569 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.561 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.561 PREDICTED: similar to major histocompatibility comp... HLA-DPB1 0.555 major histocompatibility complex, class II, DP beta ... HLA-DOB 0.490 major histocompatibility complex, class II, DO beta p... LOC651845 0.454 PREDICTED: similar to MHC class II antigen LOC100133661 0.298 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.