LOC100294275 16617

Name: LOC100294275	Sequence: fasta or formatted (266aa)		NCBI GI: 239740853
Description: PREDICTED: similar to major histocompatibility complex, class II, DR beta 3 isoform 2		Not currently referenced in the text
Other entries for this name: alt prot {267aa} PREDICTED: similar to major histocompatibility complex, class II,...
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.5 12 2 C cysteine 1.9 5 1 D aspartate 2.6 7 1 E glutamate 7.1 19 2 F phenylalanine 6.0 16 2 G glycine 9.4 25 2 H histidine 3.4 9 2 I isoleucine 1.1 3 1 K lysine 3.0 8 1 L leucine 10.9 29 2 M methionine 1.5 4 1 N asparagine 3.4 9 1 P proline 4.1 11 1 Q glutamine 5.6 15 1 R arginine 7.1 19 2 S serine 8.3 22 2 T threonine 5.6 15 1 V valine 9.4 25 2 W tryptophan 1.5 4 1 Y tyrosine 3.4 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.971 PREDICTED: similar to major histocompatibility comp... HLA-DRB3 0.950 major histocompatibility complex, class II, DR beta ... LOC100294276 0.912 PREDICTED: similar to major histocompatibility comp... LOC100290966 0.908 PREDICTED: hypothetical protein XP_002346811 LOC100294189 0.891 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.891 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB1 0.885 major histocompatibility complex, class II, DR beta... LOC100294276 0.883 PREDICTED: similar to major histocompatibility comp... LOC100294468 0.879 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB5 0.864 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.858 major histocompatibility complex, class II, DR beta ... LOC100294189 0.787 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.787 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB4 0.758 PREDICTED: major histocompatibility complex, class ... LOC100294036 0.754 PREDICTED: similar to HLA class II histocompatibili... LOC100133811 0.610 PREDICTED: similar to HLA class II histocompatibili... HLA-DQB1 0.587 major histocompatibility complex, class II, DQ beta... LOC100293977 0.587 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.587 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.583 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.582 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.582 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.582 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.572 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.572 PREDICTED: similar to major histocompatibility comp... HLA-DPB1 0.562 major histocompatibility complex, class II, DP beta ... HLA-DOB 0.503 major histocompatibility complex, class II, DO beta p... LOC651845 0.457 PREDICTED: similar to MHC class II antigen LOC100133661 0.328 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.