Guide to the Human Genome
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Search of human proteins with 4502231

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502231 aryl hydrocarbon receptor nuclear translocator
isoform 1 [Homo sapiens]
         (789 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502231 aryl hydrocarbon receptor nuclear translocator isofor...  1602   0.0  
gi|30795242 aryl hydrocarbon receptor nuclear translocator isofo...  1561   0.0  
gi|68303555 aryl hydrocarbon receptor nuclear translocator 2 [Ho...   857   0.0  
gi|30795240 aryl hydrocarbon receptor nuclear translocator isofo...   661   0.0  
gi|71852582 aryl hydrocarbon receptor nuclear translocator-like ...   327   2e-89
gi|71852580 aryl hydrocarbon receptor nuclear translocator-like ...   327   2e-89
gi|42716311 aryl hydrocarbon receptor nuclear translocator-like ...   327   2e-89
gi|31745180 aryl hydrocarbon receptor nuclear translocator-like ...   298   2e-80
gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]              144   4e-34
gi|40254439 endothelial PAS domain protein 1 [Homo sapiens]           135   2e-31
gi|4758010 clock [Homo sapiens]                                       130   6e-30
gi|31077211 hypoxia-inducible factor 1, alpha subunit isoform 2 ...   127   5e-29
gi|4504385 hypoxia-inducible factor 1, alpha subunit isoform 1 [...   127   5e-29
gi|23065535 hypoxia inducible factor 3, alpha subunit isoform a ...   112   1e-24
gi|90421311 hypoxia inducible factor 3, alpha subunit isoform c ...   112   2e-24
gi|21614542 single-minded homolog 1 [Homo sapiens]                    106   1e-22
gi|194239684 single-minded homolog 2 short isoform [Homo sapiens]     101   3e-21
gi|4827004 single-minded homolog 2 long isoform [Homo sapiens]        100   4e-21
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]    100   9e-21
gi|90421316 hypoxia inducible factor 3, alpha subunit isoform b ...    93   8e-19
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]     91   5e-18
gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens]    77   8e-14
gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens]    77   8e-14
gi|194097341 period 1 [Homo sapiens]                                   75   2e-13
gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens]    74   4e-13
gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens]    74   4e-13
gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens]    74   4e-13
gi|22027482 neuronal PAS domain protein 1 [Homo sapiens]               74   4e-13
gi|12707562 period 2 [Homo sapiens]                                    73   9e-13
gi|8567388 period 3 [Homo sapiens]                                     70   6e-12

>gi|4502231 aryl hydrocarbon receptor nuclear translocator isoform 1
           [Homo sapiens]
          Length = 789

 Score = 1602 bits (4147), Expect = 0.0
 Identities = 789/789 (100%), Positives = 789/789 (100%)

Query: 1   MAATTANPEMTSDVPSLGPAIASGNSGPGIQGGGAIVQRAIKRRPGLDFDDDGEGNSKFL 60
           MAATTANPEMTSDVPSLGPAIASGNSGPGIQGGGAIVQRAIKRRPGLDFDDDGEGNSKFL
Sbjct: 1   MAATTANPEMTSDVPSLGPAIASGNSGPGIQGGGAIVQRAIKRRPGLDFDDDGEGNSKFL 60

Query: 61  RCDDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCS 120
           RCDDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCS
Sbjct: 61  RCDDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCS 120

Query: 121 ALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVS 180
           ALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVS
Sbjct: 121 ALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVS 180

Query: 181 CETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLK 240
           CETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLK
Sbjct: 181 CETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLK 240

Query: 241 TGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGE 300
           TGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGE
Sbjct: 241 TGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGE 300

Query: 301 PHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQP 360
           PHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQP
Sbjct: 301 PHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQP 360

Query: 361 TEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKG 420
           TEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKG
Sbjct: 361 TEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKG 420

Query: 421 QVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIQ 480
           QVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIQ
Sbjct: 421 QVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIQ 480

Query: 481 RPQLGPTANLPLEMGSGQLAPRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEHSK 540
           RPQLGPTANLPLEMGSGQLAPRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEHSK
Sbjct: 481 RPQLGPTANLPLEMGSGQLAPRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEHSK 540

Query: 541 PLEKSDGLFAQDRDPRFSEIYHNINADQSKGISSSTVPATQQLFSQGNTFPPTPRPAENF 600
           PLEKSDGLFAQDRDPRFSEIYHNINADQSKGISSSTVPATQQLFSQGNTFPPTPRPAENF
Sbjct: 541 PLEKSDGLFAQDRDPRFSEIYHNINADQSKGISSSTVPATQQLFSQGNTFPPTPRPAENF 600

Query: 601 RNSGLAPPVTIVQPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQVATQATAKT 660
           RNSGLAPPVTIVQPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQVATQATAKT
Sbjct: 601 RNSGLAPPVTIVQPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQVATQATAKT 660

Query: 661 RTSQFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRGSNFAPETGQTAGQFQTRTA 720
           RTSQFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRGSNFAPETGQTAGQFQTRTA
Sbjct: 661 RTSQFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRGSNFAPETGQTAGQFQTRTA 720

Query: 721 EGVGVWPQWQGQQPHHRSSSSEQHVQQPPAQQPGQPEVFQEMLSMLGDQSNSYNNEEFPD 780
           EGVGVWPQWQGQQPHHRSSSSEQHVQQPPAQQPGQPEVFQEMLSMLGDQSNSYNNEEFPD
Sbjct: 721 EGVGVWPQWQGQQPHHRSSSSEQHVQQPPAQQPGQPEVFQEMLSMLGDQSNSYNNEEFPD 780

Query: 781 LTMFPPFSE 789
           LTMFPPFSE
Sbjct: 781 LTMFPPFSE 789


>gi|30795242 aryl hydrocarbon receptor nuclear translocator isoform
           3 [Homo sapiens]
          Length = 774

 Score = 1561 bits (4043), Expect = 0.0
 Identities = 773/789 (97%), Positives = 773/789 (97%), Gaps = 15/789 (1%)

Query: 1   MAATTANPEMTSDVPSLGPAIASGNSGPGIQGGGAIVQRAIKRRPGLDFDDDGEGNSKFL 60
           MAATTANPEMTSDVPSLGPAIASGNSGPGIQGGGAIVQRAIKRRPGLDFDDDGEGNSKFL
Sbjct: 1   MAATTANPEMTSDVPSLGPAIASGNSGPGIQGGGAIVQRAIKRRPGLDFDDDGEGNSKFL 60

Query: 61  RCDDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCS 120
           RCDDDQMSND               KER ARENHSEIERRRRNKMTAYITELSDMVPTCS
Sbjct: 61  RCDDDQMSND---------------KERFARENHSEIERRRRNKMTAYITELSDMVPTCS 105

Query: 121 ALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVS 180
           ALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVS
Sbjct: 106 ALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVS 165

Query: 181 CETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLK 240
           CETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLK
Sbjct: 166 CETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLK 225

Query: 241 TGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGE 300
           TGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGE
Sbjct: 226 TGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGE 285

Query: 301 PHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQP 360
           PHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQP
Sbjct: 286 PHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQP 345

Query: 361 TEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKG 420
           TEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKG
Sbjct: 346 TEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKG 405

Query: 421 QVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIQ 480
           QVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIQ
Sbjct: 406 QVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIQ 465

Query: 481 RPQLGPTANLPLEMGSGQLAPRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEHSK 540
           RPQLGPTANLPLEMGSGQLAPRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEHSK
Sbjct: 466 RPQLGPTANLPLEMGSGQLAPRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEHSK 525

Query: 541 PLEKSDGLFAQDRDPRFSEIYHNINADQSKGISSSTVPATQQLFSQGNTFPPTPRPAENF 600
           PLEKSDGLFAQDRDPRFSEIYHNINADQSKGISSSTVPATQQLFSQGNTFPPTPRPAENF
Sbjct: 526 PLEKSDGLFAQDRDPRFSEIYHNINADQSKGISSSTVPATQQLFSQGNTFPPTPRPAENF 585

Query: 601 RNSGLAPPVTIVQPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQVATQATAKT 660
           RNSGLAPPVTIVQPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQVATQATAKT
Sbjct: 586 RNSGLAPPVTIVQPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQVATQATAKT 645

Query: 661 RTSQFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRGSNFAPETGQTAGQFQTRTA 720
           RTSQFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRGSNFAPETGQTAGQFQTRTA
Sbjct: 646 RTSQFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRGSNFAPETGQTAGQFQTRTA 705

Query: 721 EGVGVWPQWQGQQPHHRSSSSEQHVQQPPAQQPGQPEVFQEMLSMLGDQSNSYNNEEFPD 780
           EGVGVWPQWQGQQPHHRSSSSEQHVQQPPAQQPGQPEVFQEMLSMLGDQSNSYNNEEFPD
Sbjct: 706 EGVGVWPQWQGQQPHHRSSSSEQHVQQPPAQQPGQPEVFQEMLSMLGDQSNSYNNEEFPD 765

Query: 781 LTMFPPFSE 789
           LTMFPPFSE
Sbjct: 766 LTMFPPFSE 774


>gi|68303555 aryl hydrocarbon receptor nuclear translocator 2 [Homo
           sapiens]
          Length = 717

 Score =  857 bits (2213), Expect = 0.0
 Identities = 470/797 (58%), Positives = 570/797 (71%), Gaps = 104/797 (13%)

Query: 8   PEMTSDVPS-----LGPAIASGNSGPGIQGGGAIVQRAIKRRPGLDFDD-DGEGNSKFLR 61
           PEM SD+P      + P  A+G     ++  GA+  R  KRR G+DFDD DGEG SKF  
Sbjct: 10  PEMASDIPGSVTLPVAPMAATGQ----VRMAGAMPARGGKRRSGMDFDDEDGEGPSKF-- 63

Query: 62  CDDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSA 121
                                       +RENHSEIERRRRNKMT YITELSDMVPTCSA
Sbjct: 64  ----------------------------SRENHSEIERRRRNKMTQYITELSDMVPTCSA 95

Query: 122 LARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSC 181
           LARKPDKLTILRMAVSHMKS+RGTGN STDG+YKPSFLT+QELKHLILEAADGFLF+V+ 
Sbjct: 96  LARKPDKLTILRMAVSHMKSMRGTGNKSTDGAYKPSFLTEQELKHLILEAADGFLFVVAA 155

Query: 182 ETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKT 241
           ETGRV+YVSDSVTPVLNQPQSEWFGSTLY+QVHPDDV+KLREQL TSEN++TGRILDLKT
Sbjct: 156 ETGRVIYVSDSVTPVLNQPQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKT 215

Query: 242 GTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEP 301
           GTVKKEGQQSSMRMCMGSRRSFICRMRCG++ +D + +NR++ +R R RNGLG VK+GE 
Sbjct: 216 GTVKKEGQQSSMRMCMGSRRSFICRMRCGNAPLDHLPLNRITTMRKRFRNGLGPVKEGEA 275

Query: 302 HFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPT 361
            + VVHCTGYIKAWPPAG+++P++D + GQGSK+CLVAIGRLQVTSSP C DM+ +  PT
Sbjct: 276 QYAVVHCTGYIKAWPPAGMTIPEEDADVGQGSKYCLVAIGRLQVTSSPVCMDMNGMSVPT 335

Query: 362 EFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQ 421
           EF+SRHN +GI TFVD RC++ +GYQPQ+LLGK+I+EFCHPEDQ  LR+SFQQVVKLKGQ
Sbjct: 336 EFLSRHNSDGIITFVDPRCISVIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQ 395

Query: 422 VLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIQR 481
           VLSVM+RFR+KN+EW+ +RTSSFTFQNPYSDEIEYIICTNTNVK                
Sbjct: 396 VLSVMYRFRTKNREWMLIRTSSFTFQNPYSDEIEYIICTNTNVK---------------- 439

Query: 482 PQLGPTANLPLEMGSGQLAPRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTG-PEHSK 540
                               + QQQQ EL+ V  RDGL+SY+ SQV  P    G  E  K
Sbjct: 440 --------------------QLQQQQAELE-VHQRDGLSSYDLSQVPVPNLPAGVHEAGK 478

Query: 541 PLEKSDGLFAQDRDPRFSEIYHNINADQSKGISSSTVPATQQLFSQGNTFPPTPRPAENF 600
            +EK+D +F+Q+RDPRF+E++  I+A + K +SS++   TQQ++SQG+ F P+    + F
Sbjct: 479 SVEKADAIFSQERDPRFAEMFAGISASEKKMMSSASAAGTQQIYSQGSPF-PSGHSGKAF 537

Query: 601 RNSGL-APPVTIVQPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQVATQATAK 659
            +S +  P V  +Q S+S GQ ++QISR  N +Q A   WT  +R  F  QQ+ +Q ++K
Sbjct: 538 SSSVVHVPGVNDIQSSSSTGQNMSQISRQLNQSQVA---WT-GSRPPFPGQQIPSQ-SSK 592

Query: 660 TRTSQFGVGSFQT----PSSFSSMSLPGAPTASPGAAAYPSLTNRGSNFAPETGQTAGQF 715
           T++S FG+G+  T    PSS+S +S P   T+SP   AY SL NR   FA E+GQ++GQF
Sbjct: 593 TQSSPFGIGTSHTYPADPSSYSPLSSPA--TSSPSGNAYSSLANRTPGFA-ESGQSSGQF 649

Query: 716 QTRTAEGVGVWPQWQGQQPHHRSSSSEQHVQQPPAQQPGQPEVFQEMLSMLGDQ---SNS 772
           Q R +E   VW QWQ Q  HH   S EQH      QQPGQ EVFQ+ML M GD    + +
Sbjct: 650 QGRPSE---VWSQWQSQ--HHGQQSGEQHSH----QQPGQTEVFQDMLPMPGDPTQGTGN 700

Query: 773 YNNEEFPDLTMFPPFSE 789
           YN E+F DL MFPPFSE
Sbjct: 701 YNIEDFADLGMFPPFSE 717


>gi|30795240 aryl hydrocarbon receptor nuclear translocator isoform
           2 [Homo sapiens]
          Length = 328

 Score =  661 bits (1705), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 1   MAATTANPEMTSDVPSLGPAIASGNSGPGIQGGGAIVQRAIKRRPGLDFDDDGEGNSKFL 60
           MAATTANPEMTSDVPSLGPAIASGNSGPGIQGGGAIVQRAIKRRPGLDFDDDGEGNSKFL
Sbjct: 1   MAATTANPEMTSDVPSLGPAIASGNSGPGIQGGGAIVQRAIKRRPGLDFDDDGEGNSKFL 60

Query: 61  RCDDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCS 120
           RCDDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCS
Sbjct: 61  RCDDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCS 120

Query: 121 ALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVS 180
           ALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVS
Sbjct: 121 ALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVS 180

Query: 181 CETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLK 240
           CETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLK
Sbjct: 181 CETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLK 240

Query: 241 TGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGE 300
           TGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGE
Sbjct: 241 TGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGE 300

Query: 301 PHFVVVHCTGYIKAWPPAGVSLPDDDP 327
           PHFVVVHCTGYIKAWPPAGVSLPDDDP
Sbjct: 301 PHFVVVHCTGYIKAWPPAGVSLPDDDP 327


>gi|71852582 aryl hydrocarbon receptor nuclear translocator-like
           isoform b [Homo sapiens]
          Length = 582

 Score =  327 bits (839), Expect = 2e-89
 Identities = 166/377 (44%), Positives = 245/377 (64%), Gaps = 11/377 (2%)

Query: 90  ARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTS 149
           ARE HS+IE+RRR+KM ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK+LRG  N  
Sbjct: 30  AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPY 89

Query: 150 TDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTL 209
           T+ +YKP+FL+D ELKHLIL AADGFLF+V C+ G++++VS+SV  +LN  Q++  G +L
Sbjct: 90  TEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSL 149

Query: 210 YDQVHPDDVDKLREQLSTSENALTGRILDLKTG-TVKKEGQQSSMRMCMGSRRSFICRMR 268
           +D +HP D+ K++EQLS+S+ A   R++D KTG  VK +      R+C G+RRSF CRM+
Sbjct: 150 FDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMK 209

Query: 269 CGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLPDDDPE 328
           C   SV          V ++      S K     F  +H TGY+K+WPP  + L +D+  
Sbjct: 210 CNRPSVK---------VEDKDFPSTCSKKKDRKSFCTIHSTGYLKSWPPTKMGLDEDNEP 260

Query: 329 AGQGSKF-CLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQ 387
             +G    CLVAIGRL     P   +     +  E++SRH I+G F FVD R  A + Y 
Sbjct: 261 DNEGCNLSCLVAIGRLHSHVVPQPVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYL 320

Query: 388 PQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQ 447
           PQELLG +  E+ H +D   L +  +QV++ + ++ +  ++F+ K+  ++ +R+  F+F 
Sbjct: 321 PQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFM 380

Query: 448 NPYSDEIEYIICTNTNV 464
           NP++ E+EYI+ TNT V
Sbjct: 381 NPWTKEVEYIVSTNTVV 397


>gi|71852580 aryl hydrocarbon receptor nuclear translocator-like
           isoform a [Homo sapiens]
          Length = 625

 Score =  327 bits (839), Expect = 2e-89
 Identities = 166/377 (44%), Positives = 245/377 (64%), Gaps = 11/377 (2%)

Query: 90  ARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTS 149
           ARE HS+IE+RRR+KM ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK+LRG  N  
Sbjct: 73  AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPY 132

Query: 150 TDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTL 209
           T+ +YKP+FL+D ELKHLIL AADGFLF+V C+ G++++VS+SV  +LN  Q++  G +L
Sbjct: 133 TEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSL 192

Query: 210 YDQVHPDDVDKLREQLSTSENALTGRILDLKTG-TVKKEGQQSSMRMCMGSRRSFICRMR 268
           +D +HP D+ K++EQLS+S+ A   R++D KTG  VK +      R+C G+RRSF CRM+
Sbjct: 193 FDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMK 252

Query: 269 CGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLPDDDPE 328
           C   SV          V ++      S K     F  +H TGY+K+WPP  + L +D+  
Sbjct: 253 CNRPSVK---------VEDKDFPSTCSKKKDRKSFCTIHSTGYLKSWPPTKMGLDEDNEP 303

Query: 329 AGQGSKF-CLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQ 387
             +G    CLVAIGRL     P   +     +  E++SRH I+G F FVD R  A + Y 
Sbjct: 304 DNEGCNLSCLVAIGRLHSHVVPQPVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYL 363

Query: 388 PQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQ 447
           PQELLG +  E+ H +D   L +  +QV++ + ++ +  ++F+ K+  ++ +R+  F+F 
Sbjct: 364 PQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFM 423

Query: 448 NPYSDEIEYIICTNTNV 464
           NP++ E+EYI+ TNT V
Sbjct: 424 NPWTKEVEYIVSTNTVV 440


>gi|42716311 aryl hydrocarbon receptor nuclear translocator-like
           isoform a [Homo sapiens]
          Length = 625

 Score =  327 bits (839), Expect = 2e-89
 Identities = 166/377 (44%), Positives = 245/377 (64%), Gaps = 11/377 (2%)

Query: 90  ARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTS 149
           ARE HS+IE+RRR+KM ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK+LRG  N  
Sbjct: 73  AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPY 132

Query: 150 TDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTL 209
           T+ +YKP+FL+D ELKHLIL AADGFLF+V C+ G++++VS+SV  +LN  Q++  G +L
Sbjct: 133 TEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSL 192

Query: 210 YDQVHPDDVDKLREQLSTSENALTGRILDLKTG-TVKKEGQQSSMRMCMGSRRSFICRMR 268
           +D +HP D+ K++EQLS+S+ A   R++D KTG  VK +      R+C G+RRSF CRM+
Sbjct: 193 FDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMK 252

Query: 269 CGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLPDDDPE 328
           C   SV          V ++      S K     F  +H TGY+K+WPP  + L +D+  
Sbjct: 253 CNRPSVK---------VEDKDFPSTCSKKKDRKSFCTIHSTGYLKSWPPTKMGLDEDNEP 303

Query: 329 AGQGSKF-CLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQ 387
             +G    CLVAIGRL     P   +     +  E++SRH I+G F FVD R  A + Y 
Sbjct: 304 DNEGCNLSCLVAIGRLHSHVVPQPVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYL 363

Query: 388 PQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQ 447
           PQELLG +  E+ H +D   L +  +QV++ + ++ +  ++F+ K+  ++ +R+  F+F 
Sbjct: 364 PQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFM 423

Query: 448 NPYSDEIEYIICTNTNV 464
           NP++ E+EYI+ TNT V
Sbjct: 424 NPWTKEVEYIVSTNTVV 440


>gi|31745180 aryl hydrocarbon receptor nuclear translocator-like 2
           [Homo sapiens]
          Length = 636

 Score =  298 bits (762), Expect = 2e-80
 Identities = 161/386 (41%), Positives = 238/386 (61%), Gaps = 14/386 (3%)

Query: 86  KERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGT 145
           K +  RE HS+ E+RRR+KM   I ELS M+P C+ +ARK DKLT+LRMAV H++SL+G 
Sbjct: 104 KMKAFREAHSQTEKRRRDKMNNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLRSLKGL 163

Query: 146 GNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWF 205
            N+    +Y+PSFL D EL+HLIL+ A+GFLF+V CE G++++VS SV+ +LN  Q+   
Sbjct: 164 TNSYVGSNYRPSFLQDNELRHLILKTAEGFLFVVGCERGKILFVSKSVSKILNYDQASLT 223

Query: 206 GSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTG-TVKKEGQQSSMRMCMGSRRSFI 264
           G +L+D +HP DV K++EQLS+ + +   +++D KTG  V         R+  GSRRSF 
Sbjct: 224 GQSLFDFLHPKDVAKVKEQLSSFDISPREKLIDAKTGLQVHSNLHAGRTRVYSGSRRSFF 283

Query: 265 CRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLPD 324
           CR++    SV            + C     S K     F  +HCTGY+++WPP  V + +
Sbjct: 284 CRIKSCKISVKE---------EHGCLP--NSKKKEHRKFYTIHCTGYLRSWPPNIVGMEE 332

Query: 325 DDPEAGQGSKF-CLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVAT 383
           +       S F CLVAIGRLQ    P  +   NV +PTEFI+R  + G F +VD R  A 
Sbjct: 333 ERNSKKDNSNFTCLVAIGRLQPYIVPQNSGEINV-KPTEFITRFAVNGKFVYVDQRATAI 391

Query: 384 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSS 443
           +GY PQELLG +  E+ H +D   L D  + V++ K ++L+  ++FR+K+  ++ +++  
Sbjct: 392 LGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDGSFVTLKSQW 451

Query: 444 FTFQNPYSDEIEYIICTNTNVKNSSQ 469
           F+F NP++ E+EYI+  NT V   S+
Sbjct: 452 FSFTNPWTKELEYIVSVNTLVLGHSE 477


>gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]
          Length = 824

 Score =  144 bits (362), Expect = 4e-34
 Identities = 147/558 (26%), Positives = 239/558 (42%), Gaps = 78/558 (13%)

Query: 85  DKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVS----HMK 140
           +K+R  R + ++ E++RR++    I ELS M+P      RK DK T+L   +     H +
Sbjct: 5   EKDRAKRASRNKSEKKRRDQFNVLIKELSSMLP---GNTRKMDKTTVLEKVIGFLQKHNE 61

Query: 141 SLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQP 200
               T        +KPSFL+++E   L+LEA DGF+  V+ + G ++YVSDS+TP+L   
Sbjct: 62  VSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTTD-GSIIYVSDSITPLLGHL 120

Query: 201 QSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSR 260
            S+     L + +   +  ++ + LS+           L T +   E  +S       S 
Sbjct: 121 PSDVMDQNLLNFLPEQEHSEVYKILSSHM---------LVTDSPSPEYLKSD------SD 165

Query: 261 RSFICRMRCGSSSVDPV-SVNRLSFVRN-RCRNGLGSVKDGEPHFVVVHCTGYIKAWP-P 317
             F C +  GS +     +   + FV N R  N + S            C G+      P
Sbjct: 166 LEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNVPSPS----------CNGFDNTLSRP 215

Query: 318 AGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTE-FISRHNIEGIFTFV 376
             V L         G + C +A  RL         +M  V +P E F SRH++E  F F+
Sbjct: 216 CRVPL---------GKEVCFIATVRLATPQF--LKEMCIVDEPLEEFTSRHSLEWKFLFL 264

Query: 377 DHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEW 436
           DHR    +GY P E+LG +  ++ H +D +LL    Q +++  G+  S  +RF +K Q+W
Sbjct: 265 DHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQF-GKGKSCCYRFLTKGQQW 323

Query: 437 LWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIQRPQLGPTANLPLEMGS 496
           +W++T  +   + ++ + E+I+CT++ V  +           ++ P      +  L+   
Sbjct: 324 IWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVERRQELALEDPPSEALHSSALKDKG 383

Query: 497 GQLAPRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEH---SKPLEKSDGLFAQDR 553
             L PRQ     ++    G  GL + +HS      ++    H   S+P      L A+  
Sbjct: 384 SSLEPRQHFNTLDV----GASGL-NTSHSPSASSRSSHKSSHTAMSEPTSTPTKLMAEAS 438

Query: 554 DPRFSEIYHNINADQSKGISSSTVPATQQL----FSQGNTFP-PTPRPAENFRNSGLAPP 608
            P                  S+T+P  Q+L     SQ  T P P P P+       L P 
Sbjct: 439 TPALPR--------------SATLP--QELPVPGLSQAATMPAPLPSPSSCDLTQQLLPQ 482

Query: 609 VTIVQPSASAGQMLAQIS 626
             +    A   Q  AQ S
Sbjct: 483 TVLQSTPAPMAQFSAQFS 500


>gi|40254439 endothelial PAS domain protein 1 [Homo sapiens]
          Length = 870

 Score =  135 bits (339), Expect = 2e-31
 Identities = 100/385 (25%), Positives = 183/385 (47%), Gaps = 46/385 (11%)

Query: 77  SDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAV 136
           +D E+  +  ER  +E   +  R RR+K T    EL+  +P   +++   DK +I+R+A+
Sbjct: 3   ADKEKKRSSSER-RKEKSRDAARCRRSKETEVFYELAHELPLPHSVSSHLDKASIMRLAI 61

Query: 137 SHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPV 196
           S +++ +   +  ++   +     DQ++ +L L+A +GF+ +V+ + G ++++S++++  
Sbjct: 62  SFLRTHKLLSSVCSENESEAE--ADQQMDNLYLKALEGFIAVVT-QDGDMIFLSENISKF 118

Query: 197 LNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMC 256
           +   Q E  G +++D  HP D +++RE LS    +          G  KK          
Sbjct: 119 MGLTQVELTGHSIFDFTHPCDHEEIRENLSLKNGS----------GFGKKSKD------- 161

Query: 257 MGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWP 316
           M + R F  RM+C               V NR R    +V      + V+HCTG +K + 
Sbjct: 162 MSTERDFFMRMKCT--------------VTNRGR----TVNLKSATWKVLHCTGQVKVYN 203

Query: 317 PAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFV 376
               + P  +   G         I   +    P+  D+        F+SRH+++  FT+ 
Sbjct: 204 ----NCPPHNSLCGYKEPLLSCLIIMCEPIQHPSHMDIP--LDSKTFLSRHSMDMKFTYC 257

Query: 377 DHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEW 436
           D R    +GY P+ELLG++  EF H  D + +  S Q +   KGQV+S  +R  +K+  +
Sbjct: 258 DDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLC-TKGQVVSGQYRMLAKHGGY 316

Query: 437 LWMRTSSFTFQNPYSDEIEYIICTN 461
           +W+ T      NP + + + I+C N
Sbjct: 317 VWLETQGTVIYNPRNLQPQCIMCVN 341


>gi|4758010 clock [Homo sapiens]
          Length = 846

 Score =  130 bits (326), Expect = 6e-30
 Identities = 114/450 (25%), Positives = 207/450 (46%), Gaps = 61/450 (13%)

Query: 85  DKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRG 144
           DK++  R + ++ E++RR++    I EL  M+P     ARK DK T+L+ ++  ++  + 
Sbjct: 30  DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHKE 86

Query: 145 TGNTSTDGS-----YKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQ 199
                +D S     +KP+FL+++E   L+LEA DGF F+     G ++YVS+SVT +L  
Sbjct: 87  I-TAQSDASEIRQDWKPTFLSNEEFTQLMLEALDGF-FLAIMTDGSIIYVSESVTSLLEH 144

Query: 200 PQSEWFGSTLYDQVHPDDVDKLREQLST---SENALTGRILDLKTGTVKKEGQQSSMRMC 256
             S+    ++++ +   +  ++ + LST     ++LT   L  K                
Sbjct: 145 LPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSK---------------- 188

Query: 257 MGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWP 316
             ++  F C M  G+  +DP   +   +V+      +G+ K         H  G+     
Sbjct: 189 --NQLEFCCHMLRGT--IDPKEPSTYEYVKF-----IGNFKSLNSVSSSAH-NGF----- 233

Query: 317 PAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTE-FISRHNIEGIFTF 375
             G       P      + C VA  RL         +M  V +P E F SRH++E  F F
Sbjct: 234 -EGTIQRTHRPS--YEDRVCFVATVRLATPQF--IKEMCTVEEPNEEFTSRHSLEWKFLF 288

Query: 376 VDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQE 435
           +DHR    +GY P E+LG +  ++ H +D + L    + +++  G+  S  +RF +K Q+
Sbjct: 289 LDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQY-GKGKSCYYRFLTKGQQ 347

Query: 436 WLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIQRPQLGPTANLPLEMG 495
           W+W++T  +   + ++   E+I+CT+T V  +            +R +LG   +LP    
Sbjct: 348 WIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAE-------RRRELGIEESLPETAA 400

Query: 496 SGQLAPRQQQQQTELDMVPGRDGLASYNHS 525
                 +       ++ V  ++ L  ++HS
Sbjct: 401 D---KSQDSGSDNRINTVSLKEALERFDHS 427


>gi|31077211 hypoxia-inducible factor 1, alpha subunit isoform 2
           [Homo sapiens]
          Length = 735

 Score =  127 bits (318), Expect = 5e-29
 Identities = 98/385 (25%), Positives = 182/385 (47%), Gaps = 62/385 (16%)

Query: 85  DKERLARENHSE----IERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMK 140
           DK++++ E   E      R RR+K +    EL+  +P    ++   DK +++R+ +S+++
Sbjct: 9   DKKKISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVMRLTISYLR 68

Query: 141 --SLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLN 198
              L   G+   +   K       ++    L+A DGF+ +++ + G ++Y+SD+V   + 
Sbjct: 69  VRKLLDAGDLDIEDDMKA------QMNCFYLKALDGFVMVLT-DDGDMIYISDNVNKYMG 121

Query: 199 QPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMG 258
             Q E  G +++D  HP D +++RE L+             + G VKK  +Q++      
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREMLTH------------RNGLVKKGKEQNT------ 163

Query: 259 SRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPA 318
            +RSF  RM+C  +S            R R  N    +K     + V+HCTG+I  +   
Sbjct: 164 -QRSFFLRMKCTLTS------------RGRTMN----IKSAT--WKVLHCTGHIHVY--- 201

Query: 319 GVSLPDDDPEAG--QGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFV 376
                 + P+ G  +    CLV I        P+ +++        F+SRH+++  F++ 
Sbjct: 202 --DTNSNQPQCGYKKPPMTCLVLI----CEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYC 255

Query: 377 DHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEW 436
           D R    +GY+P+ELLG++I E+ H  D   L  +   +   KGQV +  +R  +K   +
Sbjct: 256 DERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMF-TKGQVTTGQYRMLAKRGGY 314

Query: 437 LWMRTSSFTFQNPYSDEIEYIICTN 461
           +W+ T +    N  + + + I+C N
Sbjct: 315 VWVETQATVIYNTKNSQPQCIVCVN 339


>gi|4504385 hypoxia-inducible factor 1, alpha subunit isoform 1
           [Homo sapiens]
          Length = 826

 Score =  127 bits (318), Expect = 5e-29
 Identities = 98/385 (25%), Positives = 182/385 (47%), Gaps = 62/385 (16%)

Query: 85  DKERLARENHSE----IERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMK 140
           DK++++ E   E      R RR+K +    EL+  +P    ++   DK +++R+ +S+++
Sbjct: 9   DKKKISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVMRLTISYLR 68

Query: 141 --SLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLN 198
              L   G+   +   K       ++    L+A DGF+ +++ + G ++Y+SD+V   + 
Sbjct: 69  VRKLLDAGDLDIEDDMKA------QMNCFYLKALDGFVMVLT-DDGDMIYISDNVNKYMG 121

Query: 199 QPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMG 258
             Q E  G +++D  HP D +++RE L+             + G VKK  +Q++      
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREMLTH------------RNGLVKKGKEQNT------ 163

Query: 259 SRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPA 318
            +RSF  RM+C  +S            R R  N    +K     + V+HCTG+I  +   
Sbjct: 164 -QRSFFLRMKCTLTS------------RGRTMN----IKSAT--WKVLHCTGHIHVY--- 201

Query: 319 GVSLPDDDPEAG--QGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFV 376
                 + P+ G  +    CLV I        P+ +++        F+SRH+++  F++ 
Sbjct: 202 --DTNSNQPQCGYKKPPMTCLVLI----CEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYC 255

Query: 377 DHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEW 436
           D R    +GY+P+ELLG++I E+ H  D   L  +   +   KGQV +  +R  +K   +
Sbjct: 256 DERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMF-TKGQVTTGQYRMLAKRGGY 314

Query: 437 LWMRTSSFTFQNPYSDEIEYIICTN 461
           +W+ T +    N  + + + I+C N
Sbjct: 315 VWVETQATVIYNTKNSQPQCIVCVN 339


>gi|23065535 hypoxia inducible factor 3, alpha subunit isoform a
           [Homo sapiens]
          Length = 667

 Score =  112 bits (281), Expect = 1e-24
 Identities = 89/383 (23%), Positives = 173/383 (45%), Gaps = 48/383 (12%)

Query: 79  DEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSH 138
           D Q       L +E   +  R RR++ T  + +L+  +P    ++   DK +I+R+ +S+
Sbjct: 2   DWQDHRSTTELRKEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISY 61

Query: 139 MKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLN 198
           ++  R        G +       + L    L+A +GF+ +++ E G + Y+S++V+  L 
Sbjct: 62  LRMHR----LCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAE-GDMAYLSENVSKHLG 116

Query: 199 QPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMG 258
             Q E  G +++D +HP D ++L++ L T +  L+ R ++  T                 
Sbjct: 117 LSQLELIGHSIFDFIHPCDQEELQDAL-TPQQTLSRRKVEAPT----------------- 158

Query: 259 SRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPA 318
             R F  RM+   +S            R R  N   +       + V++C+G+++A+ P 
Sbjct: 159 -ERCFSLRMKSTLTS------------RGRTLNLKAAT------WKVLNCSGHMRAYKPP 199

Query: 319 GVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDH 378
             + P   P++    + CLV I      + P+   +        F+SRH+++  FT+ D 
Sbjct: 200 AQTSPAGSPDSEPPLQ-CLVLI----CEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDD 254

Query: 379 RCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLW 438
           R     GY P +L+G +  E+ H  D   +  S   ++  KGQ ++  +RF +++  +LW
Sbjct: 255 RIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLS-KGQAVTGQYRFLARSGGYLW 313

Query: 439 MRTSSFTFQNPYSDEIEYIICTN 461
            +T +         + E I+C +
Sbjct: 314 TQTQATVVSGGRGPQSESIVCVH 336


>gi|90421311 hypoxia inducible factor 3, alpha subunit isoform c
           [Homo sapiens]
          Length = 669

 Score =  112 bits (279), Expect = 2e-24
 Identities = 88/381 (23%), Positives = 173/381 (45%), Gaps = 48/381 (12%)

Query: 81  QSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMK 140
           Q +     L +E   +  R RR++ T  + +L+  +P    ++   DK +I+R+ +S+++
Sbjct: 6   QRARSTTELRKEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISYLR 65

Query: 141 SLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQP 200
             R        G +       + L    L+A +GF+ +++ E G + Y+S++V+  L   
Sbjct: 66  MHR----LCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAE-GDMAYLSENVSKHLGLS 120

Query: 201 QSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSR 260
           Q E  G +++D +HP D ++L++ L T +  L+ R ++  T                   
Sbjct: 121 QLELIGHSIFDFIHPCDQEELQDAL-TPQQTLSRRKVEAPT------------------E 161

Query: 261 RSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGV 320
           R F  RM+   +S            R R  N   +       + V++C+G+++A+ P   
Sbjct: 162 RCFSLRMKSTLTS------------RGRTLNLKAAT------WKVLNCSGHMRAYKPPAQ 203

Query: 321 SLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRC 380
           + P   P++    + CLV I      + P+   +        F+SRH+++  FT+ D R 
Sbjct: 204 TSPAGSPDSEPPLQ-CLVLI----CEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDDRI 258

Query: 381 VATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMR 440
               GY P +L+G +  E+ H  D   +  S   ++  KGQ ++  +RF +++  +LW +
Sbjct: 259 AEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLS-KGQAVTGQYRFLARSGGYLWTQ 317

Query: 441 TSSFTFQNPYSDEIEYIICTN 461
           T +         + E I+C +
Sbjct: 318 TQATVVSGGRGPQSESIVCVH 338


>gi|21614542 single-minded homolog 1 [Homo sapiens]
          Length = 766

 Score =  106 bits (264), Expect = 1e-22
 Identities = 94/376 (25%), Positives = 164/376 (43%), Gaps = 53/376 (14%)

Query: 91  RENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSL----RGTG 146
           +E      R RR K  +   EL+ ++P  SA+  + DK +I+R+  S++K       G G
Sbjct: 2   KEKSKNAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRVVFPEGLG 61

Query: 147 NTSTDGSY-KPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWF 205
                 S   P     +EL   +L+  DGF+F+V+ + G+++Y+S++ +  L   Q E  
Sbjct: 62  EAWGHSSRTSPLDNVGRELGSHLLQTLDGFIFVVAPD-GKIMYISETASVHLGLSQVELT 120

Query: 206 GSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSRRSFIC 265
           G+++Y+ +HP D D++   L+  +   +  + + +                    RSF  
Sbjct: 121 GNSIYEYIHPADHDEMTAVLTAHQPYHSHFVQEYEI------------------ERSFFL 162

Query: 266 RMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLPDD 325
           RM+C  +                 +   G    G   + V+HC+GY+K       SL D 
Sbjct: 163 RMKCVLA-----------------KRNAGLTCGG---YKVIHCSGYLKI---RQYSL-DM 198

Query: 326 DPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVATVG 385
            P  G      LVA+G     S P             F+ R +++    F+D R     G
Sbjct: 199 SPFDGCYQNVGLVAVGH----SLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTG 254

Query: 386 YQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFT 445
           Y+PQ+L+ K +    H  D   LR +   ++ +KGQV +  +RF +K+  W+W+++ +  
Sbjct: 255 YEPQDLIEKTLYHHVHGCDTFHLRCA-HHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATI 313

Query: 446 FQNPYSDEIEYIICTN 461
             N  S     I+  N
Sbjct: 314 VHNSRSSRPHCIVSVN 329


>gi|194239684 single-minded homolog 2 short isoform [Homo sapiens]
          Length = 570

 Score =  101 bits (251), Expect = 3e-21
 Identities = 143/622 (22%), Positives = 245/622 (39%), Gaps = 99/622 (15%)

Query: 91  RENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTST 150
           +E      + RR K      EL+ ++P  SA+  + DK +I+R+  S++K          
Sbjct: 2   KEKSKNAAKTRREKENGEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRAVFPEGLG 61

Query: 151 DGSYKPSFL-----TDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWF 205
           D   +PS         +EL   +L+  DGF+F+V+ + G+++Y+S++ +  L   Q E  
Sbjct: 62  DAWGQPSRAGPLDGVAKELGSHLLQTLDGFVFVVASD-GKIMYISETASVHLGLSQVELT 120

Query: 206 GSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSRRSFIC 265
           G+++Y+ +HP D D++   L T+   L   +L           Q+  +       RSF  
Sbjct: 121 GNSIYEYIHPSDHDEMTAVL-TAHQPLHHHLL-----------QEYEI------ERSFFL 162

Query: 266 RMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWP-PAGVSLPD 324
           RM+C  +                 +   G    G   + V+HC+GY+K       +SL D
Sbjct: 163 RMKCVLA-----------------KRNAGLTCSG---YKVIHCSGYLKIRQYMLDMSLYD 202

Query: 325 DDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNV-CQPTEFISRHNIEGIFTFVDHRCVAT 383
                      C   +G + V  S   + ++ +      F+ R +++    F+D R    
Sbjct: 203 S----------CYQIVGLVAVGQSLPPSAITEIKLYSNMFMFRASLDLKLIFLDSRVTEV 252

Query: 384 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSS 443
            GY+PQ+L+ K +    H  D   LR +   ++ +KGQV +  +R  SK   W+W+++ +
Sbjct: 253 TGYEPQDLIEKTLYHHVHGCDVFHLRYA-HHLLLVKGQVTTKYYRLLSKRGGWVWVQSYA 311

Query: 444 FTFQNPYSD-------------EIEY----IICTNTNVKNSSQEPRPTLSNTIQRPQLGP 486
               N  S              EIEY    +     +   S    R  LS + +  +L  
Sbjct: 312 TVVHNSRSSRPHCIVSVNYVLTEIEYKELQLSLEQVSTAKSQDSWRTALSTSQETRKLVK 371

Query: 487 TANLPLEMG-SGQLAPRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEHSKP-LEK 544
             N  ++        P QQ    ++D +          + +   P +   P   +P  E 
Sbjct: 372 PKNTKMKTKLRTNPYPPQQYSSFQMDKLE----CGQLGNWRASPPASAAAPPELQPHSES 427

Query: 545 SDGLFAQDRDPRFSEIYHNINADQSKGISSSTVPATQQLFSQGNTFP-------PTPRPA 597
           SD L+       FS  YH  +      + SS  P     F Q    P        +  PA
Sbjct: 428 SDLLYTPSYSLPFS--YHYGHFPLDSHVFSSKKPMLPAKFGQPQGSPCEVARFFLSTLPA 485

Query: 598 ENFRNSGLAPPV--TIVQPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQVATQ 655
                   A P+  +   P+ +  +  A  +RHS       P++     SG    +V   
Sbjct: 486 SGECQWHYANPLVPSSSSPAKNPPEPPANTARHS-----LVPSY--EGGSGLLVGKVGGL 538

Query: 656 ATAKTRTSQFGVGSFQT-PSSF 676
            TA +R+S  G    +T PS F
Sbjct: 539 RTAGSRSSHGGGWQMETEPSRF 560


>gi|4827004 single-minded homolog 2 long isoform [Homo sapiens]
          Length = 667

 Score =  100 bits (250), Expect = 4e-21
 Identities = 92/378 (24%), Positives = 165/378 (43%), Gaps = 57/378 (15%)

Query: 91  RENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTST 150
           +E      + RR K      EL+ ++P  SA+  + DK +I+R+  S++K          
Sbjct: 2   KEKSKNAAKTRREKENGEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRAVFPEGLG 61

Query: 151 DGSYKPSFL-----TDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWF 205
           D   +PS         +EL   +L+  DGF+F+V+ + G+++Y+S++ +  L   Q E  
Sbjct: 62  DAWGQPSRAGPLDGVAKELGSHLLQTLDGFVFVVASD-GKIMYISETASVHLGLSQVELT 120

Query: 206 GSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSRRSFIC 265
           G+++Y+ +HP D D++   L T+   L   +L           Q+  +       RSF  
Sbjct: 121 GNSIYEYIHPSDHDEMTAVL-TAHQPLHHHLL-----------QEYEI------ERSFFL 162

Query: 266 RMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWP-PAGVSLPD 324
           RM+C  +                 +   G    G   + V+HC+GY+K       +SL D
Sbjct: 163 RMKCVLA-----------------KRNAGLTCSG---YKVIHCSGYLKIRQYMLDMSLYD 202

Query: 325 DDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNV-CQPTEFISRHNIEGIFTFVDHRCVAT 383
                      C   +G + V  S   + ++ +      F+ R +++    F+D R    
Sbjct: 203 S----------CYQIVGLVAVGQSLPPSAITEIKLYSNMFMFRASLDLKLIFLDSRVTEV 252

Query: 384 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSS 443
            GY+PQ+L+ K +    H  D   LR +   ++ +KGQV +  +R  SK   W+W+++ +
Sbjct: 253 TGYEPQDLIEKTLYHHVHGCDVFHLRYA-HHLLLVKGQVTTKYYRLLSKRGGWVWVQSYA 311

Query: 444 FTFQNPYSDEIEYIICTN 461
               N  S     I+  N
Sbjct: 312 TVVHNSRSSRPHCIVSVN 329


>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
          Length = 901

 Score = 99.8 bits (247), Expect = 9e-21
 Identities = 109/419 (26%), Positives = 187/419 (44%), Gaps = 42/419 (10%)

Query: 80  EQSSADKERLA---RENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAV 136
           +Q  + +ERL    +E   +  R RR K      EL+ ++P  +A+  + DK +I+R+ +
Sbjct: 9   QQDPSRRERLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTI 68

Query: 137 SHMK------------SLRGTG---NTSTDGSYK---PSFLTDQELK-HL---ILEAADG 174
           S++K            +LR  G   NTS  G+ +   PS L  +  + HL   IL++ DG
Sbjct: 69  SYLKMRDFANQGDPPWNLRMEGPPPNTSVKGAQRRRSPSALAIEVFEAHLGSHILQSLDG 128

Query: 175 FLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTG 234
           F+F ++ E G+ +Y+S++V+  L   Q E  GS+++D VHP D  ++ EQL        G
Sbjct: 129 FVFALNQE-GKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGM--KLPPG 185

Query: 235 RILDLKTGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLG 294
           R L L  GT   E   SS      S           S      ++ R  F+R +      
Sbjct: 186 RGL-LSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKR 242

Query: 295 SVKDGEPHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDM 354
            V      + V+H TG ++      VSL        Q     +VA         P   ++
Sbjct: 243 GVHIKSSGYKVIHITGRLR----LRVSLSHGRTVPSQIMGLVVVA----HALPPPTINEV 294

Query: 355 SNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQ 414
              C    F++R N++    + ++R    +   P +++GK    F H ED + +R S   
Sbjct: 295 RIDCH--MFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLD 352

Query: 415 VVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRP 473
           ++  KGQ ++  +R+  KN  ++W+++S+    N  +   + II  N  + N   +  P
Sbjct: 353 LLN-KGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTP 410


>gi|90421316 hypoxia inducible factor 3, alpha subunit isoform b
           [Homo sapiens]
          Length = 613

 Score = 93.2 bits (230), Expect = 8e-19
 Identities = 76/330 (23%), Positives = 149/330 (45%), Gaps = 48/330 (14%)

Query: 132 LRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSD 191
           +R+ +S+++  R        G +       + L    L+A +GF+ +++ E G + Y+S+
Sbjct: 1   MRLTISYLRMHR----LCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAE-GDMAYLSE 55

Query: 192 SVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQS 251
           +V+  L   Q E  G +++D +HP D ++L++ L T +  L+ R ++  T          
Sbjct: 56  NVSKHLGLSQLELIGHSIFDFIHPCDQEELQDAL-TPQQTLSRRKVEAPT---------- 104

Query: 252 SMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGY 311
                    R F  RM+   +S            R R  N   +       + V++C+G+
Sbjct: 105 --------ERCFSLRMKSTLTS------------RGRTLNLKAAT------WKVLNCSGH 138

Query: 312 IKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEG 371
           ++A+ P   + P   P++    + CLV I      + P+   +        F+SRH+++ 
Sbjct: 139 MRAYKPPAQTSPAGSPDSEPPLQ-CLVLI----CEAIPHPGSLEPPLGRGAFLSRHSLDM 193

Query: 372 IFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRS 431
            FT+ D R     GY P +L+G +  E+ H  D   +  S   ++  KGQ ++  +RF +
Sbjct: 194 KFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLS-KGQAVTGQYRFLA 252

Query: 432 KNQEWLWMRTSSFTFQNPYSDEIEYIICTN 461
           ++  +LW +T +         + E I+C +
Sbjct: 253 RSGGYLWTQTQATVVSGGRGPQSESIVCVH 282


>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
          Length = 920

 Score = 90.5 bits (223), Expect = 5e-18
 Identities = 109/438 (24%), Positives = 185/438 (42%), Gaps = 61/438 (13%)

Query: 80  EQSSADKERLA---RENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAV 136
           +Q  + +ERL    +E   +  R RR K      EL+ ++P  +A+  + DK +I+R+ +
Sbjct: 9   QQDPSRRERLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTI 68

Query: 137 SHMK------------SLRGTG---NTSTDGSY----------------------KPSFL 159
           S++K            +LR  G   NTS  G                         PS L
Sbjct: 69  SYLKMRDFANQGDPPWNLRMEGPPPNTSVKGIQMWKSELCMRKTPCEVIGAQRRRSPSAL 128

Query: 160 TDQELK-HL---ILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHP 215
             +  + HL   IL++ DGF+F ++ E G+ +Y+S++V+  L   Q E  GS+++D VHP
Sbjct: 129 AIEVFEAHLGSHILQSLDGFVFALNQE-GKFLYISETVSIYLGLSQVELTGSSVFDYVHP 187

Query: 216 DDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVD 275
            D  ++ EQL        GR L L  GT   E   SS      S           S    
Sbjct: 188 GDHVEMAEQLGM--KLPPGRGL-LSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTT 242

Query: 276 PVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKF 335
             ++ R  F+R +       V      + V+H TG ++      VSL        Q    
Sbjct: 243 DNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLR----LRVSLSHGRTVPSQIMGL 298

Query: 336 CLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKN 395
            +VA         P   ++   C    F++R N++    + ++R    +   P +++GK 
Sbjct: 299 VVVA----HALPPPTINEVRIDCH--MFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKR 352

Query: 396 IVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIE 455
              F H ED + +R S   ++  KGQ ++  +R+  KN  ++W+++S+    N  +   +
Sbjct: 353 CYHFIHAEDVEGIRHSHLDLLN-KGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEK 411

Query: 456 YIICTNTNVKNSSQEPRP 473
            II  N  + N   +  P
Sbjct: 412 NIIWVNYLLSNPEYKDTP 429


>gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens]
          Length = 1424

 Score = 76.6 bits (187), Expect = 8e-14
 Identities = 96/427 (22%), Positives = 176/427 (41%), Gaps = 68/427 (15%)

Query: 98  ERRRRNKMTAYITELSDMVPT----CSALARKPDKLTILRMAVSHMKSLRGTGNTSTD-- 151
           E+RRR + + YI EL++++            KPDK  IL+  V  ++ ++  G T ++  
Sbjct: 34  EKRRREQESKYIEELAELISANLSDIDNFNVKPDKCAILKETVRQIRQIKEQGKTISNDD 93

Query: 152 -------GSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
                   S     +    L  L+L+A DGFLF+V+   G +V+VS++VT  L   Q + 
Sbjct: 94  DVQKADVSSTGQGVIDKDSLGPLLLQALDGFLFVVN-RDGNIVFVSENVTQYLQYKQEDL 152

Query: 205 FGSTLYDQVHPDD-VDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSRRSF 263
             +++Y+ +H +D  D L+    ++ N +        + T + + Q+S          +F
Sbjct: 153 VNTSVYNILHEEDRKDFLKNLPKSTVNGV--------SWTNETQRQKS---------HTF 195

Query: 264 ICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLP 323
            CRM   +       +N    +R R              +  + C           +S P
Sbjct: 196 NCRMLMKTPHDILEDINASPEMRQR--------------YETMQC---------FALSQP 232

Query: 324 DDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVAT 383
               E G+  + C++ + R   T     T  SN   P  FI+RH++ G    +D   + +
Sbjct: 233 RAMMEEGEDLQSCMICVARRITTGER--TFPSN---PESFITRHDLSGKVVNIDTNSLRS 287

Query: 384 VGYQP--QELLGKNIVEFCHPED-QQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMR 440
              +P  ++++ + I  F    D Q   +    Q   L G   + ++RF   +   +  +
Sbjct: 288 -SMRPGFEDIIRRCIQRFFSLNDGQSWSQKRHYQEAYLNGHAETPVYRFSLADGTIVTAQ 346

Query: 441 TSSFTFQNPYSDEIEYIICTN-TNVKNSSQEPRPTLSNTIQRPQLGPTANLPLEMGSGQL 499
           T S  F+NP +++    + T+    + +   P P       RP   P A     +G   +
Sbjct: 347 TKSKLFRNPVTNDRHGFVSTHFLQREQNGYRPNPNPVGQGIRP---PMAGCNSSVGGMSM 403

Query: 500 APRQQQQ 506
           +P Q  Q
Sbjct: 404 SPNQGLQ 410


>gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens]
          Length = 1420

 Score = 76.6 bits (187), Expect = 8e-14
 Identities = 96/427 (22%), Positives = 176/427 (41%), Gaps = 68/427 (15%)

Query: 98  ERRRRNKMTAYITELSDMVPT----CSALARKPDKLTILRMAVSHMKSLRGTGNTSTD-- 151
           E+RRR + + YI EL++++            KPDK  IL+  V  ++ ++  G T ++  
Sbjct: 34  EKRRREQESKYIEELAELISANLSDIDNFNVKPDKCAILKETVRQIRQIKEQGKTISNDD 93

Query: 152 -------GSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
                   S     +    L  L+L+A DGFLF+V+   G +V+VS++VT  L   Q + 
Sbjct: 94  DVQKADVSSTGQGVIDKDSLGPLLLQALDGFLFVVN-RDGNIVFVSENVTQYLQYKQEDL 152

Query: 205 FGSTLYDQVHPDD-VDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSRRSF 263
             +++Y+ +H +D  D L+    ++ N +        + T + + Q+S          +F
Sbjct: 153 VNTSVYNILHEEDRKDFLKNLPKSTVNGV--------SWTNETQRQKS---------HTF 195

Query: 264 ICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLP 323
            CRM   +       +N    +R R              +  + C           +S P
Sbjct: 196 NCRMLMKTPHDILEDINASPEMRQR--------------YETMQC---------FALSQP 232

Query: 324 DDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVAT 383
               E G+  + C++ + R   T     T  SN   P  FI+RH++ G    +D   + +
Sbjct: 233 RAMMEEGEDLQSCMICVARRITTGER--TFPSN---PESFITRHDLSGKVVNIDTNSLRS 287

Query: 384 VGYQP--QELLGKNIVEFCHPED-QQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMR 440
              +P  ++++ + I  F    D Q   +    Q   L G   + ++RF   +   +  +
Sbjct: 288 -SMRPGFEDIIRRCIQRFFSLNDGQSWSQKRHYQEAYLNGHAETPVYRFSLADGTIVTAQ 346

Query: 441 TSSFTFQNPYSDEIEYIICTN-TNVKNSSQEPRPTLSNTIQRPQLGPTANLPLEMGSGQL 499
           T S  F+NP +++    + T+    + +   P P       RP   P A     +G   +
Sbjct: 347 TKSKLFRNPVTNDRHGFVSTHFLQREQNGYRPNPNPVGQGIRP---PMAGCNSSVGGMSM 403

Query: 500 APRQQQQ 506
           +P Q  Q
Sbjct: 404 SPNQGLQ 410


>gi|194097341 period 1 [Homo sapiens]
          Length = 1290

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 109/481 (22%), Positives = 178/481 (37%), Gaps = 86/481 (17%)

Query: 157 SFLTDQELKHLI----LEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQ 212
           S  T +EL+H+     L+  D F   VS  TGR+VY+S+    +L   +  + G+   + 
Sbjct: 198 STYTLEELEHITSEYTLQNQDTFSVAVSFLTGRIVYISEQAAVLLRCKRDVFRGTRFSEL 257

Query: 213 VHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSRRSFICRMRCGSS 272
           + P DV       + S     G      TG     G +   +      +S  CR+R G  
Sbjct: 258 LAPQDVGVFYGSTAPSRLPTWG------TGASAGSGLRDFTQ-----EKSVFCRIRGGPD 306

Query: 273 SVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQG 332
                                   +D  P +     T Y+       + + D  P     
Sbjct: 307 ------------------------RDPGPRYQPFRLTPYVTK-----IRVSDGAP----A 333

Query: 333 SKFCLVAIGRLQVT-SSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQPQEL 391
              CL+   R+     +P       +     F +RH    +F  VD R    +GY PQ+L
Sbjct: 334 QPCCLLIAERIHSGYEAPRIPPDKRI-----FTTRHTPSCLFQDVDERAAPLLGYLPQDL 388

Query: 392 LGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLS-VMFRFRSKNQEWLWMRTSSFTFQNPY 450
           LG  ++ F HPED+ L+    +++++L GQ       RF ++N E++ M TS   F +P+
Sbjct: 389 LGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDTSWAGFVHPW 448

Query: 451 SDEIEYIICTNTNVKNSSQEPRPTLSNTIQRPQLGPTANLPLEMGSGQLAPRQQQQQTEL 510
           S ++ +++              P   +    P   P  +L  ++   +L+ +  +   + 
Sbjct: 449 SRKVAFVL------GRHKVRTAPLNEDVFTPPAPSPAPSLDTDI--QELSEQIHRLLLQP 500

Query: 511 DMVPGRDGLASYNHSQVVQPVTTTGPEHSKPLEKSDGLFAQDRDP------RFSEIYHNI 564
              P   GL        V  VT+ GP HS P   SD        P       F +I  ++
Sbjct: 501 VHSPSPTGLCG------VGAVTSPGPLHS-PGSSSDSNGGDAEGPGPPAPVTFQQICKDV 553

Query: 565 NADQSKGISSSTVPATQQLFSQGNTFPPT-PRPAENFRNSGLAPPVTIVQPSASAGQMLA 623
           +  + +G         QQLF +    P + PR          A P     P   AG    
Sbjct: 554 HLVKHQG---------QQLFIESRARPQSRPRLPATGTFKAKALPCQSPDPELEAGSAPV 604

Query: 624 Q 624
           Q
Sbjct: 605 Q 605


>gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens]
          Length = 1399

 Score = 74.3 bits (181), Expect = 4e-13
 Identities = 96/421 (22%), Positives = 172/421 (40%), Gaps = 68/421 (16%)

Query: 95  SEIERRRRNKMTAYITELSDM----VPTCSALARKPDKLTILRMAVSH---MKSLRGTGN 147
           S  E+RRR +   Y+ EL+++    +    +L+ KPDK  IL+  V     MK +    +
Sbjct: 29  SSTEKRRREQENKYLEELAELLSANISDIDSLSVKPDKCKILKKTVDQIQLMKRMEQEKS 88

Query: 148 TSTDGSYKPSF-------LTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQP 200
           T+ D   K          +  + L  L+LEA DGF F+V+CE GR+V+VS++VT  L   
Sbjct: 89  TTDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVNCE-GRIVFVSENVTSYLGYN 147

Query: 201 QSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSR 260
           Q E   +++Y  +H  D           +N L   +++         G          + 
Sbjct: 148 QEELMNTSVYSILHVGD------HAEFVKNLLPKSLVN---------GVPWPQEATRRNS 192

Query: 261 RSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGV 320
            +F CRM       +P + N+ +  R                + V+ C           V
Sbjct: 193 HTFNCRMLIHPPD-EPGTENQEACQR----------------YEVMQC---------FTV 226

Query: 321 SLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRC 380
           S P    E G+  + CL+ I R ++   P  T + +      F+++ +  G    +D   
Sbjct: 227 SQPKSIQEDGEDFQSCLICIAR-RLPRPPAITGVES------FMTKQDTTGKIISIDTSS 279

Query: 381 VATVGYQP-QELLGKNIVEFCHPEDQQ--LLRDSFQQVVKLKGQVLSVMFRFRSKNQEWL 437
           +   G    ++L+ K I  F  P+ ++    R  FQ+V+  +G   S  +RF   +   L
Sbjct: 280 LRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVM-TRGTASSPSYRFILNDGTML 338

Query: 438 WMRTSSFTFQNPYSDEIEYIICTN-TNVKNSSQEPRPTLSNTIQRPQLGPTANLPLEMGS 496
              T          D   +I+  +  + ++S   P+   ++ +  P++ P+ N  +    
Sbjct: 339 SAHTKCKLCYPQSPDMQPFIMGIHIIDREHSGLSPQDDTNSGMSIPRVNPSVNPSISPAH 398

Query: 497 G 497
           G
Sbjct: 399 G 399



 Score = 36.2 bits (82), Expect = 0.12
 Identities = 70/299 (23%), Positives = 98/299 (32%), Gaps = 42/299 (14%)

Query: 500  APRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEH-------SKPLEKSDGLFAQD 552
            AP Q + Q +   + G+  L   N   ++     T P          + +     L AQ 
Sbjct: 1050 APNQLRLQLQ-QRLQGQQQLIHQNRQAILNQFAATAPVGINMRSGMQQQITPQPPLNAQM 1108

Query: 553  RDPRFSEIYHNINADQSKGISSSTVPATQQLFSQGNTFPPTPRPAENFRNSGLAPPVTIV 612
               R  E+Y   +  +        +   QQ F  GN  PP+         SGL  PV + 
Sbjct: 1109 LAQRQRELYSQQHRQRQLIQQQRAMLMRQQSF--GNNLPPS---------SGL--PVQMG 1155

Query: 613  QPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQVATQATAKTRTS--------- 663
             P    G   A       P  G  P   P + S FS      +A+   R S         
Sbjct: 1156 NPRLPQG---APQQFPYPPNYGTNPGTPPASTSPFSQLAANPEASLANRNSMVSRGMTGN 1212

Query: 664  ---QFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRGSNFAP---ETGQTAGQFQT 717
               QFG G        +    PGA     G A +    + GS+  P      Q++   QT
Sbjct: 1213 IGGQFGTG-INPQMQQNVFQYPGAGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSLLQQT 1271

Query: 718  RTAEGVGV--WPQWQGQQPHHRSSSSEQHVQQPPAQQPGQPEVFQEMLSMLGDQSNSYN 774
              A G        WQ     + +  S+    QP   QPG        +SM G  +N  N
Sbjct: 1272 PPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQN 1330



 Score = 31.6 bits (70), Expect = 3.0
 Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 20/230 (8%)

Query: 484  LGPTANLPLEMGSGQL---APRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEHSK 540
            L P++ LP++MG+ +L   AP+Q          PG    ++   SQ+      +    + 
Sbjct: 1144 LPPSSGLPVQMGNPRLPQGAPQQFPYPPNYGTNPGTPPASTSPFSQLAANPEASLANRNS 1203

Query: 541  PLEKS-----DGLFAQDRDPRFSEIYHNINADQSKGISSSTVPATQQLF----SQGNTFP 591
             + +       G F    +P+  +     N  Q  G  +  VP  +  F    S G++  
Sbjct: 1204 MVSRGMTGNIGGQFGTGINPQMQQ-----NVFQYPG--AGMVPQGEANFAPSLSPGSSMV 1256

Query: 592  PTPRPAENFRNSGLAPPVTIVQPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQ 651
            P P P          PP +  Q           I  ++  +Q      TP     ++   
Sbjct: 1257 PMPIPPPQSSLLQQTPPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMS 1316

Query: 652  VATQATAKTRTSQFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRG 701
            + T + A   T+   +         SS+ +PG  T  P     P+L + G
Sbjct: 1317 I-TVSMAGGNTNVQNMNPMMAQMQMSSLQMPGMNTVCPEQINDPALRHTG 1365


>gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens]
          Length = 1440

 Score = 74.3 bits (181), Expect = 4e-13
 Identities = 96/421 (22%), Positives = 172/421 (40%), Gaps = 68/421 (16%)

Query: 95  SEIERRRRNKMTAYITELSDM----VPTCSALARKPDKLTILRMAVSH---MKSLRGTGN 147
           S  E+RRR +   Y+ EL+++    +    +L+ KPDK  IL+  V     MK +    +
Sbjct: 29  SSTEKRRREQENKYLEELAELLSANISDIDSLSVKPDKCKILKKTVDQIQLMKRMEQEKS 88

Query: 148 TSTDGSYKPSF-------LTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQP 200
           T+ D   K          +  + L  L+LEA DGF F+V+CE GR+V+VS++VT  L   
Sbjct: 89  TTDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVNCE-GRIVFVSENVTSYLGYN 147

Query: 201 QSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSR 260
           Q E   +++Y  +H  D           +N L   +++         G          + 
Sbjct: 148 QEELMNTSVYSILHVGD------HAEFVKNLLPKSLVN---------GVPWPQEATRRNS 192

Query: 261 RSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGV 320
            +F CRM       +P + N+ +  R                + V+ C           V
Sbjct: 193 HTFNCRMLIHPPD-EPGTENQEACQR----------------YEVMQC---------FTV 226

Query: 321 SLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRC 380
           S P    E G+  + CL+ I R ++   P  T + +      F+++ +  G    +D   
Sbjct: 227 SQPKSIQEDGEDFQSCLICIAR-RLPRPPAITGVES------FMTKQDTTGKIISIDTSS 279

Query: 381 VATVGYQP-QELLGKNIVEFCHPEDQQ--LLRDSFQQVVKLKGQVLSVMFRFRSKNQEWL 437
           +   G    ++L+ K I  F  P+ ++    R  FQ+V+  +G   S  +RF   +   L
Sbjct: 280 LRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVM-TRGTASSPSYRFILNDGTML 338

Query: 438 WMRTSSFTFQNPYSDEIEYIICTN-TNVKNSSQEPRPTLSNTIQRPQLGPTANLPLEMGS 496
              T          D   +I+  +  + ++S   P+   ++ +  P++ P+ N  +    
Sbjct: 339 SAHTKCKLCYPQSPDMQPFIMGIHIIDREHSGLSPQDDTNSGMSIPRVNPSVNPSISPAH 398

Query: 497 G 497
           G
Sbjct: 399 G 399



 Score = 36.2 bits (82), Expect = 0.12
 Identities = 70/299 (23%), Positives = 98/299 (32%), Gaps = 42/299 (14%)

Query: 500  APRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEH-------SKPLEKSDGLFAQD 552
            AP Q + Q +   + G+  L   N   ++     T P          + +     L AQ 
Sbjct: 1050 APNQLRLQLQ-QRLQGQQQLIHQNRQAILNQFAATAPVGINMRSGMQQQITPQPPLNAQM 1108

Query: 553  RDPRFSEIYHNINADQSKGISSSTVPATQQLFSQGNTFPPTPRPAENFRNSGLAPPVTIV 612
               R  E+Y   +  +        +   QQ F  GN  PP+         SGL  PV + 
Sbjct: 1109 LAQRQRELYSQQHRQRQLIQQQRAMLMRQQSF--GNNLPPS---------SGL--PVQMG 1155

Query: 613  QPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQVATQATAKTRTS--------- 663
             P    G   A       P  G  P   P + S FS      +A+   R S         
Sbjct: 1156 NPRLPQG---APQQFPYPPNYGTNPGTPPASTSPFSQLAANPEASLANRNSMVSRGMTGN 1212

Query: 664  ---QFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRGSNFAP---ETGQTAGQFQT 717
               QFG G        +    PGA     G A +    + GS+  P      Q++   QT
Sbjct: 1213 IGGQFGTG-INPQMQQNVFQYPGAGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSLLQQT 1271

Query: 718  RTAEGVGV--WPQWQGQQPHHRSSSSEQHVQQPPAQQPGQPEVFQEMLSMLGDQSNSYN 774
              A G        WQ     + +  S+    QP   QPG        +SM G  +N  N
Sbjct: 1272 PPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQN 1330



 Score = 31.6 bits (70), Expect = 3.0
 Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 20/230 (8%)

Query: 484  LGPTANLPLEMGSGQL---APRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEHSK 540
            L P++ LP++MG+ +L   AP+Q          PG    ++   SQ+      +    + 
Sbjct: 1144 LPPSSGLPVQMGNPRLPQGAPQQFPYPPNYGTNPGTPPASTSPFSQLAANPEASLANRNS 1203

Query: 541  PLEKS-----DGLFAQDRDPRFSEIYHNINADQSKGISSSTVPATQQLF----SQGNTFP 591
             + +       G F    +P+  +     N  Q  G  +  VP  +  F    S G++  
Sbjct: 1204 MVSRGMTGNIGGQFGTGINPQMQQ-----NVFQYPG--AGMVPQGEANFAPSLSPGSSMV 1256

Query: 592  PTPRPAENFRNSGLAPPVTIVQPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQ 651
            P P P          PP +  Q           I  ++  +Q      TP     ++   
Sbjct: 1257 PMPIPPPQSSLLQQTPPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMS 1316

Query: 652  VATQATAKTRTSQFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRG 701
            + T + A   T+   +         SS+ +PG  T  P     P+L + G
Sbjct: 1317 I-TVSMAGGNTNVQNMNPMMAQMQMSSLQMPGMNTVCPEQINDPALRHTG 1365


>gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens]
          Length = 1441

 Score = 74.3 bits (181), Expect = 4e-13
 Identities = 96/421 (22%), Positives = 172/421 (40%), Gaps = 68/421 (16%)

Query: 95  SEIERRRRNKMTAYITELSDM----VPTCSALARKPDKLTILRMAVSH---MKSLRGTGN 147
           S  E+RRR +   Y+ EL+++    +    +L+ KPDK  IL+  V     MK +    +
Sbjct: 29  SSTEKRRREQENKYLEELAELLSANISDIDSLSVKPDKCKILKKTVDQIQLMKRMEQEKS 88

Query: 148 TSTDGSYKPSF-------LTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQP 200
           T+ D   K          +  + L  L+LEA DGF F+V+CE GR+V+VS++VT  L   
Sbjct: 89  TTDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVNCE-GRIVFVSENVTSYLGYN 147

Query: 201 QSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSR 260
           Q E   +++Y  +H  D           +N L   +++         G          + 
Sbjct: 148 QEELMNTSVYSILHVGD------HAEFVKNLLPKSLVN---------GVPWPQEATRRNS 192

Query: 261 RSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGV 320
            +F CRM       +P + N+ +  R                + V+ C           V
Sbjct: 193 HTFNCRMLIHPPD-EPGTENQEACQR----------------YEVMQC---------FTV 226

Query: 321 SLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRC 380
           S P    E G+  + CL+ I R ++   P  T + +      F+++ +  G    +D   
Sbjct: 227 SQPKSIQEDGEDFQSCLICIAR-RLPRPPAITGVES------FMTKQDTTGKIISIDTSS 279

Query: 381 VATVGYQP-QELLGKNIVEFCHPEDQQ--LLRDSFQQVVKLKGQVLSVMFRFRSKNQEWL 437
           +   G    ++L+ K I  F  P+ ++    R  FQ+V+  +G   S  +RF   +   L
Sbjct: 280 LRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVM-TRGTASSPSYRFILNDGTML 338

Query: 438 WMRTSSFTFQNPYSDEIEYIICTN-TNVKNSSQEPRPTLSNTIQRPQLGPTANLPLEMGS 496
              T          D   +I+  +  + ++S   P+   ++ +  P++ P+ N  +    
Sbjct: 339 SAHTKCKLCYPQSPDMQPFIMGIHIIDREHSGLSPQDDTNSGMSIPRVNPSVNPSISPAH 398

Query: 497 G 497
           G
Sbjct: 399 G 399



 Score = 36.2 bits (82), Expect = 0.12
 Identities = 70/299 (23%), Positives = 98/299 (32%), Gaps = 42/299 (14%)

Query: 500  APRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEH-------SKPLEKSDGLFAQD 552
            AP Q + Q +   + G+  L   N   ++     T P          + +     L AQ 
Sbjct: 1050 APNQLRLQLQ-QRLQGQQQLIHQNRQAILNQFAATAPVGINMRSGMQQQITPQPPLNAQM 1108

Query: 553  RDPRFSEIYHNINADQSKGISSSTVPATQQLFSQGNTFPPTPRPAENFRNSGLAPPVTIV 612
               R  E+Y   +  +        +   QQ F  GN  PP+         SGL  PV + 
Sbjct: 1109 LAQRQRELYSQQHRQRQLIQQQRAMLMRQQSF--GNNLPPS---------SGL--PVQMG 1155

Query: 613  QPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQVATQATAKTRTS--------- 663
             P    G   A       P  G  P   P + S FS      +A+   R S         
Sbjct: 1156 NPRLPQG---APQQFPYPPNYGTNPGTPPASTSPFSQLAANPEASLANRNSMVSRGMTGN 1212

Query: 664  ---QFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRGSNFAP---ETGQTAGQFQT 717
               QFG G        +    PGA     G A +    + GS+  P      Q++   QT
Sbjct: 1213 IGGQFGTG-INPQMQQNVFQYPGAGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSLLQQT 1271

Query: 718  RTAEGVGV--WPQWQGQQPHHRSSSSEQHVQQPPAQQPGQPEVFQEMLSMLGDQSNSYN 774
              A G        WQ     + +  S+    QP   QPG        +SM G  +N  N
Sbjct: 1272 PPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQN 1330



 Score = 31.6 bits (70), Expect = 3.0
 Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 20/230 (8%)

Query: 484  LGPTANLPLEMGSGQL---APRQQQQQTELDMVPGRDGLASYNHSQVVQPVTTTGPEHSK 540
            L P++ LP++MG+ +L   AP+Q          PG    ++   SQ+      +    + 
Sbjct: 1144 LPPSSGLPVQMGNPRLPQGAPQQFPYPPNYGTNPGTPPASTSPFSQLAANPEASLANRNS 1203

Query: 541  PLEKS-----DGLFAQDRDPRFSEIYHNINADQSKGISSSTVPATQQLF----SQGNTFP 591
             + +       G F    +P+  +     N  Q  G  +  VP  +  F    S G++  
Sbjct: 1204 MVSRGMTGNIGGQFGTGINPQMQQ-----NVFQYPG--AGMVPQGEANFAPSLSPGSSMV 1256

Query: 592  PTPRPAENFRNSGLAPPVTIVQPSASAGQMLAQISRHSNPTQGATPTWTPTTRSGFSAQQ 651
            P P P          PP +  Q           I  ++  +Q      TP     ++   
Sbjct: 1257 PMPIPPPQSSLLQQTPPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMS 1316

Query: 652  VATQATAKTRTSQFGVGSFQTPSSFSSMSLPGAPTASPGAAAYPSLTNRG 701
            + T + A   T+   +         SS+ +PG  T  P     P+L + G
Sbjct: 1317 I-TVSMAGGNTNVQNMNPMMAQMQMSSLQMPGMNTVCPEQINDPALRHTG 1365


>gi|22027482 neuronal PAS domain protein 1 [Homo sapiens]
          Length = 590

 Score = 74.3 bits (181), Expect = 4e-13
 Identities = 89/375 (23%), Positives = 160/375 (42%), Gaps = 63/375 (16%)

Query: 91  RENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMK---------- 140
           +E      R RR K      EL+ ++P   A++ + DK +I+R++V++++          
Sbjct: 47  KEKSRNAARSRRGKENLEFFELAKLLPLPGAISSQLDKASIVRLSVTYLRLRRFAALGAP 106

Query: 141 --SLRGTGNTS--TDGSYKPSFLT----DQELKHLILEAADGFLFIVSCETGRVVYVSDS 192
              LR  G  +    G   P+ L     +Q L   IL++ DGF+F ++ E G+ +Y+S++
Sbjct: 107 PWGLRAAGPPAGLAPGRRGPAALVSEVFEQHLGGHILQSLDGFVFALNQE-GKFLYISET 165

Query: 193 VTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQS- 251
           V+  L   Q E  GS+++D +HP D  ++ EQL             L+T T       S 
Sbjct: 166 VSIYLGLSQVEMTGSSVFDYIHPGDHSEVLEQLG------------LRTPTPGPPTPPSV 213

Query: 252 SMRMCMGSRRSFICRMRCGSSSVDPVSV--NRLSFVRNR---CRNGLGSVKDGEPHFVVV 306
           S      S  +    +    + V P S+   R  FVR +    + GL     G   + V+
Sbjct: 214 SSSSSSSSSLADTPEIEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASG---YKVI 270

Query: 307 HCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISR 366
           H TG ++A     V+L    P A       L   G +                    + R
Sbjct: 271 HVTGRLRAHALGLVALGHTLPPAPLAE---LPLHGHM-------------------IVFR 308

Query: 367 HNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVM 426
            ++       + R    +   P EL+G++  +F H +D   +R S   ++  KGQV++  
Sbjct: 309 LSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLD-KGQVMTGY 367

Query: 427 FRFRSKNQEWLWMRT 441
           +R+  +   ++W+++
Sbjct: 368 YRWLQRAGGFVWLQS 382


>gi|12707562 period 2 [Homo sapiens]
          Length = 1255

 Score = 73.2 bits (178), Expect = 9e-13
 Identities = 88/428 (20%), Positives = 167/428 (39%), Gaps = 68/428 (15%)

Query: 46  GLDFDDDGEGNSKFLRCDDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKM 105
           G D DD G+     +   D + S D      +  E + +     + +  S+++  +  ++
Sbjct: 55  GSDCDDSGKELGMLVEPPDARQSPDTFSLMMAKSEHNPSTSG-CSSDQSSKVDTHK--EL 111

Query: 106 TAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRG---------TGNTSTDGSYKP 156
              + EL   +P       K   L  L+ A+  +K ++          +      G+  P
Sbjct: 112 IKTLKELKVHLPADKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMSSEGHPCGADVP 171

Query: 157 SFLTDQELKHL----ILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQ 212
           S+ T +E++ +    I++ AD F   VS  +G+++Y+SD V  + +  +  +  +   + 
Sbjct: 172 SY-TVEEMESVTSEHIVKNADMFAVAVSLVSGKILYISDQVASIFHCKRDAFSDAKFVEF 230

Query: 213 VHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSRRSFICRMRCGSS 272
           + P DV       S  +  L               G  S  + CM   +SF CR+    S
Sbjct: 231 LAPHDVGVFHSFTSPYKLPLWSMC----------SGADSFTQECM-EEKSFFCRVSVRKS 279

Query: 273 SVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQG 332
             + +  +                    P+ V V                   D +  + 
Sbjct: 280 HENEIRYHPFRMT---------------PYLVKVR------------------DQQGAES 306

Query: 333 SKFCLVAIGRLQVT-SSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQPQEL 391
              CL+   R+     +P       +     F + H    +F  VD R V  +GY PQ+L
Sbjct: 307 QLCCLLLAERVHSGYEAPRIPPEKRI-----FTTTHTPNCLFQDVDERAVPLLGYLPQDL 361

Query: 392 LGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVM-FRFRSKNQEWLWMRTSSFTFQNPY 450
           +   ++   HP D+ L+    +++++  GQ       RFR++N E++ + TS  +F NP+
Sbjct: 362 IETPVLVQLHPSDRPLMLAIHKKILQSGGQPFDYSPIRFRARNGEYITLDTSWSSFINPW 421

Query: 451 SDEIEYII 458
           S +I +II
Sbjct: 422 SRKISFII 429


>gi|8567388 period 3 [Homo sapiens]
          Length = 1201

 Score = 70.5 bits (171), Expect = 6e-12
 Identities = 88/392 (22%), Positives = 159/392 (40%), Gaps = 73/392 (18%)

Query: 86  KERLARENHSEIERRRR--NKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLR 143
           + +LA  +HSE + R R   ++   + E+    P  S    KP  L  L  A+  + S++
Sbjct: 34  QRKLADSSHSEQQDRNRVSEELIMVVQEMKKYFP--SERRNKPSTLDALNYALRCVHSVQ 91

Query: 144 GTGN----TSTDGSYKP--SFLTDQELKHLILEAA----DGFLFIVSCETGRVVYVSDSV 193
                    S +G+ +   S  + +EL  +  E      D F+ + S  +GR+V++S+  
Sbjct: 92  ANSEFFQILSQNGAPQADVSMYSLEELATIASEHTSKNTDTFVAVFSFLSGRLVHISEQA 151

Query: 194 TPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSE----NALTGRILDLKTGTVKKEGQ 249
             +LN+ +     S   D + P D+       + ++    N  T R    +   VK    
Sbjct: 152 ALILNRKKDVLASSHFVDLLAPQDMRVFYAHTARAQLPFWNNWTQRAARYECAPVKP--- 208

Query: 250 QSSMRMCMGSRRSFICRMRCGSSSVDPVSVNRLSFVRNRCRNGLGSVKDGEPHFVVVHCT 309
                        F CR+R G               + +C +    +    P+ + VH  
Sbjct: 209 -------------FFCRIRGGEDRK-----------QEKCHSPFRII----PYLIHVH-- 238

Query: 310 GYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVT-SSPNCTDMSNVCQPTEFISRHN 368
                  PA   L        +    CL  + ++     +P       +     F + H 
Sbjct: 239 ------HPAQPEL--------ESEPCCLTVVEKIHSGYEAPRIPVNKRI-----FTTTHT 279

Query: 369 IEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQ--VLSVM 426
              +F  VD + V  +GY PQ+L+G +I+ + HPED+ L+    Q+V+K  G        
Sbjct: 280 PGCVFLEVDEKAVPLLGYLPQDLIGTSILSYLHPEDRSLMVAIHQKVLKYAGHPPFEHSP 339

Query: 427 FRFRSKNQEWLWMRTSSFTFQNPYSDEIEYII 458
            RF ++N +++ + +S  +F NP+S +I +II
Sbjct: 340 IRFCTQNGDYIILDSSWSSFVNPWSRKISFII 371


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.129    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,243,263
Number of Sequences: 37866
Number of extensions: 1648932
Number of successful extensions: 6220
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 5686
Number of HSP's gapped (non-prelim): 637
length of query: 789
length of database: 18,247,518
effective HSP length: 110
effective length of query: 679
effective length of database: 14,082,258
effective search space: 9561853182
effective search space used: 9561853182
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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