Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LRP3 Sequence: fasta or formatted (770aa) NCBI GI: 167555125
Description:

low density lipoprotein receptor-related protein 3

Referenced in:

Lipoproteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         73           3
 C cysteine            5.8         45           1
 D aspartate           6.4         49           2
 E glutamate           4.9         38           2
 F phenylalanine       3.1         24           2
 G glycine            10.1         78           2
 H histidine           1.9         15           1
 I isoleucine          2.1         16           1
 K lysine              1.4         11           1
 L leucine             9.0         69           3
 M methionine          0.9          7           1
 N asparagine          2.1         16           2
 P proline             9.7         75           4
 Q glutamine           4.9         38           1
 R arginine            8.4         65           3
 S serine              8.2         63           3
 T threonine           3.5         27           1
 V valine              4.2         32           2
 W tryptophan          1.4         11           2
 Y tyrosine            2.3         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein receptor-related protein 3 ... 
LRP12                 0.360   low density lipoprotein-related protein 12 isoform a ...
LRP12                 0.360   low density lipoprotein-related protein 12 isoform ...
LRP10                 0.257   low density lipoprotein receptor-related protein 10 ...
LRP1                  0.067   low density lipoprotein-related protein 1 
LRP2                  0.063   low density lipoprotein-related protein 2 
MFRP                  0.062   membrane frizzled-related protein 
LRP1B                 0.060   low density lipoprotein-related protein 1B precursor...
SORL1                 0.060   sortilin-related receptor containing LDLR class A rep...
SSPO                  0.057   SCO-spondin 
LRP4                  0.048   low density lipoprotein receptor-related protein 4 ...
ST14                  0.046   matriptase 
LDLR                  0.043   low density lipoprotein receptor precursor 
VLDLR                 0.042   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.042   very low density lipoprotein receptor isoform a [Hom...
LDLRAD3               0.041   low density lipoprotein receptor class A domain cont...
LRP8                  0.041   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.041   low density lipoprotein receptor-related protein 8 i...
CORIN                 0.040   corin 
LRP5                  0.039   low density lipoprotein receptor-related protein 5 ...
LRP6                  0.038   low density lipoprotein receptor-related protein 6 ...
HSPG2                 0.038   heparan sulfate proteoglycan 2 
CUBN                  0.037   cubilin 
LRP8                  0.037   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.033   low density lipoprotein receptor-related protein 8 i...
CSMD3                 0.033   CUB and Sushi multiple domains 3 isoform 3 
TLL2                  0.030   tolloid-like 2 
TMPRSS7               0.030   transmembrane protease, serine 7 
TLL1                  0.029   tolloid-like 1 
TMPRSS6               0.027   transmembrane protease, serine 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press