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Search of human proteins with 40806200
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40806200 metallothionein-like 5, testis-specific isoform a
[Homo sapiens]
(508 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40806200 metallothionein-like 5, testis-specific isoform a [H... 1065 0.0
gi|89111119 metallothionein-like 5, testis-specific isoform b [H... 622 e-178
gi|169234723 lin-54 homolog isoform b [Homo sapiens] 249 3e-66
gi|169234721 lin-54 homolog isoform b [Homo sapiens] 249 3e-66
gi|169234719 lin-54 homolog isoform a [Homo sapiens] 249 3e-66
gi|224028284 ring finger protein 184 isoform 2 [Homo sapiens] 37 0.042
gi|38570121 ring finger protein 184 isoform 1 [Homo sapiens] 37 0.042
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ... 33 0.47
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens] 33 0.47
gi|150010639 ubiquitin thiolesterase 22 [Homo sapiens] 33 0.80
gi|57242807 zinc finger protein 518 [Homo sapiens] 33 0.80
gi|21450838 SH3 and cysteine rich domain 3 [Homo sapiens] 32 1.8
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens] 31 2.3
gi|21359951 RNA binding motif protein 42 [Homo sapiens] 31 2.3
gi|61743980 stabilin 2 precursor [Homo sapiens] 31 2.3
gi|187607364 tuftelin 1 isoform 2 [Homo sapiens] 30 4.0
gi|9910596 tuftelin 1 isoform 1 [Homo sapiens] 30 4.0
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 30 4.0
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 30 4.0
gi|21264602 laminin alpha 5 [Homo sapiens] 30 5.2
gi|148922852 general transcription factor IIH, polypeptide 2C [H... 30 6.8
gi|169206224 PREDICTED: hypothetical protein [Homo sapiens] 30 6.8
gi|169206527 PREDICTED: hypothetical protein [Homo sapiens] 30 6.8
gi|113424187 PREDICTED: hypothetical protein [Homo sapiens] 30 6.8
gi|109809737 general transcription factor IIH, polypeptide 2D [H... 30 6.8
gi|188595677 integrin, beta 2 precursor [Homo sapiens] 29 8.8
gi|89191865 integrin, beta 2 precursor [Homo sapiens] 29 8.8
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 29 8.8
gi|146232000 checkpoint suppressor 1 isoform 1 [Homo sapiens] 29 8.8
gi|44955921 ELK3 protein [Homo sapiens] 29 8.8
>gi|40806200 metallothionein-like 5, testis-specific isoform a [Homo
sapiens]
Length = 508
Score = 1065 bits (2753), Expect = 0.0
Identities = 508/508 (100%), Positives = 508/508 (100%)
Query: 1 MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK 60
MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK
Sbjct: 1 MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK 60
Query: 61 EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC 120
EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC
Sbjct: 61 EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC 120
Query: 121 NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL 180
NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL
Sbjct: 121 NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL 180
Query: 181 LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ 240
LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ
Sbjct: 181 LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ 240
Query: 241 YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP 300
YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP
Sbjct: 241 YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP 300
Query: 301 KITLAGYCDCFASGDFCNNCNCNNCCNNLHHDIERFKAIKACLGRNPEAFQPKIGKGQLG 360
KITLAGYCDCFASGDFCNNCNCNNCCNNLHHDIERFKAIKACLGRNPEAFQPKIGKGQLG
Sbjct: 301 KITLAGYCDCFASGDFCNNCNCNNCCNNLHHDIERFKAIKACLGRNPEAFQPKIGKGQLG 360
Query: 361 NVKPQHNKGCNCRRSGCLKNYCECYEAQIMCSSICKCIGCKNYEESPERKTLMSMPNYMQ 420
NVKPQHNKGCNCRRSGCLKNYCECYEAQIMCSSICKCIGCKNYEESPERKTLMSMPNYMQ
Sbjct: 361 NVKPQHNKGCNCRRSGCLKNYCECYEAQIMCSSICKCIGCKNYEESPERKTLMSMPNYMQ 420
Query: 421 TGGLEGSHYLPPTKFSGLPRFSHDRRPSSCISWEVVEATCACLLAQGEEAEKEHCSKCLA 480
TGGLEGSHYLPPTKFSGLPRFSHDRRPSSCISWEVVEATCACLLAQGEEAEKEHCSKCLA
Sbjct: 421 TGGLEGSHYLPPTKFSGLPRFSHDRRPSSCISWEVVEATCACLLAQGEEAEKEHCSKCLA 480
Query: 481 EQMILEEFGRCLSQILHTEFKSKGLKME 508
EQMILEEFGRCLSQILHTEFKSKGLKME
Sbjct: 481 EQMILEEFGRCLSQILHTEFKSKGLKME 508
>gi|89111119 metallothionein-like 5, testis-specific isoform b [Homo
sapiens]
Length = 306
Score = 622 bits (1605), Expect = e-178
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK 60
MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK
Sbjct: 1 MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK 60
Query: 61 EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC 120
EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC
Sbjct: 61 EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC 120
Query: 121 NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL 180
NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL
Sbjct: 121 NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL 180
Query: 181 LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ 240
LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ
Sbjct: 181 LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ 240
Query: 241 YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP 300
YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP
Sbjct: 241 YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP 300
Query: 301 KITLAG 306
KITLAG
Sbjct: 301 KITLAG 306
>gi|169234723 lin-54 homolog isoform b [Homo sapiens]
Length = 528
Score = 249 bits (637), Expect = 3e-66
Identities = 136/287 (47%), Positives = 173/287 (60%), Gaps = 42/287 (14%)
Query: 253 PKPMTALVG-RFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPPKITLAG----- 306
P P T VG LPA +TQ + + S+ + S F S + ++ G
Sbjct: 240 PAPGTGNVGYAVLPAQ----YVTQLQQSSYVSIASNSTFTGTSGIQTQARLPFNGIIPSE 295
Query: 307 -------------------YCDCFASGDFCNNCNCNNCCNNLHHDIERFKAIKACLGRNP 347
YCDCFA+G+FCNNCNC NC NNL H+ ER KAIKACL RNP
Sbjct: 296 SASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNP 355
Query: 348 EAFQPKIGKGQLGNVKPQHNKGCNCRRSGCLKNYCECYEAQIMCSSICKCIGCKNYEESP 407
EAF+PKIGKG+ G +H+KGCNC+RSGCLKNYCECYEA+IMCSSICKCIGCKN+EESP
Sbjct: 356 EAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESP 415
Query: 408 ERKTLMSMPNYMQTGGLEGSHYLPPTKFSG---------LPRFSH--DRRPSSCISWEVV 456
ERKTLM + + + + + TK S P + + P + ++ EV
Sbjct: 416 ERKTLMHLADAAEVRVQQQT--AAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVA 473
Query: 457 EATCACLLAQGEEAEKEHCSKCLAEQMILEEFGRCLSQILHTEFKSK 503
EATC CLLAQ E+A+K+ SK AE+MILEEFGRCL ++++ K+K
Sbjct: 474 EATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAK 520
>gi|169234721 lin-54 homolog isoform b [Homo sapiens]
Length = 528
Score = 249 bits (637), Expect = 3e-66
Identities = 136/287 (47%), Positives = 173/287 (60%), Gaps = 42/287 (14%)
Query: 253 PKPMTALVG-RFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPPKITLAG----- 306
P P T VG LPA +TQ + + S+ + S F S + ++ G
Sbjct: 240 PAPGTGNVGYAVLPAQ----YVTQLQQSSYVSIASNSTFTGTSGIQTQARLPFNGIIPSE 295
Query: 307 -------------------YCDCFASGDFCNNCNCNNCCNNLHHDIERFKAIKACLGRNP 347
YCDCFA+G+FCNNCNC NC NNL H+ ER KAIKACL RNP
Sbjct: 296 SASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNP 355
Query: 348 EAFQPKIGKGQLGNVKPQHNKGCNCRRSGCLKNYCECYEAQIMCSSICKCIGCKNYEESP 407
EAF+PKIGKG+ G +H+KGCNC+RSGCLKNYCECYEA+IMCSSICKCIGCKN+EESP
Sbjct: 356 EAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESP 415
Query: 408 ERKTLMSMPNYMQTGGLEGSHYLPPTKFSG---------LPRFSH--DRRPSSCISWEVV 456
ERKTLM + + + + + TK S P + + P + ++ EV
Sbjct: 416 ERKTLMHLADAAEVRVQQQT--AAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVA 473
Query: 457 EATCACLLAQGEEAEKEHCSKCLAEQMILEEFGRCLSQILHTEFKSK 503
EATC CLLAQ E+A+K+ SK AE+MILEEFGRCL ++++ K+K
Sbjct: 474 EATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAK 520
>gi|169234719 lin-54 homolog isoform a [Homo sapiens]
Length = 749
Score = 249 bits (637), Expect = 3e-66
Identities = 136/287 (47%), Positives = 173/287 (60%), Gaps = 42/287 (14%)
Query: 253 PKPMTALVG-RFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPPKITLAG----- 306
P P T VG LPA +TQ + + S+ + S F S + ++ G
Sbjct: 461 PAPGTGNVGYAVLPAQ----YVTQLQQSSYVSIASNSTFTGTSGIQTQARLPFNGIIPSE 516
Query: 307 -------------------YCDCFASGDFCNNCNCNNCCNNLHHDIERFKAIKACLGRNP 347
YCDCFA+G+FCNNCNC NC NNL H+ ER KAIKACL RNP
Sbjct: 517 SASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNP 576
Query: 348 EAFQPKIGKGQLGNVKPQHNKGCNCRRSGCLKNYCECYEAQIMCSSICKCIGCKNYEESP 407
EAF+PKIGKG+ G +H+KGCNC+RSGCLKNYCECYEA+IMCSSICKCIGCKN+EESP
Sbjct: 577 EAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESP 636
Query: 408 ERKTLMSMPNYMQTGGLEGSHYLPPTKFSG---------LPRFSH--DRRPSSCISWEVV 456
ERKTLM + + + + + TK S P + + P + ++ EV
Sbjct: 637 ERKTLMHLADAAEVRVQQQT--AAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVA 694
Query: 457 EATCACLLAQGEEAEKEHCSKCLAEQMILEEFGRCLSQILHTEFKSK 503
EATC CLLAQ E+A+K+ SK AE+MILEEFGRCL ++++ K+K
Sbjct: 695 EATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAK 741
>gi|224028284 ring finger protein 184 isoform 2 [Homo sapiens]
Length = 503
Score = 37.0 bits (84), Expect = 0.042
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 363 KPQHNKGCNCRRS-------GCLKNYCECYEAQIMCSSICKCIGCKN-YEESPERK 410
KPQ KGC C R+ C C CY + C C C GC+N Y + E+K
Sbjct: 381 KPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLD-CICRGCQNSYMANGEKK 435
>gi|38570121 ring finger protein 184 isoform 1 [Homo sapiens]
Length = 577
Score = 37.0 bits (84), Expect = 0.042
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 363 KPQHNKGCNCRRS-------GCLKNYCECYEAQIMCSSICKCIGCKN-YEESPERK 410
KPQ KGC C R+ C C CY + C C C GC+N Y + E+K
Sbjct: 455 KPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLD-CICRGCQNSYMANGEKK 509
>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
sapiens]
Length = 2542
Score = 33.5 bits (75), Expect = 0.47
Identities = 43/196 (21%), Positives = 67/196 (34%), Gaps = 42/196 (21%)
Query: 103 LSALEDVALLQAPQPPACNVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMI------ 156
LS + L P F SL A+ P L A ++ HP + M
Sbjct: 1822 LSTFQPANKLNKNVPTNVRSSFPVSLPLAYPHPHFALLAAQTMQQIRHPRLPMAQFGGTF 1881
Query: 157 --------PVEIKEAGGTTTSNNPEEATLQNLLAQESCCKFPSSQELEDASCCSLKKDSN 208
P ++ T+++P+ L Q S L ASC
Sbjct: 1882 SPSPNTWGPFPVRPVNPGNTNSSPKHNNTSRLPNQNGTVLPSESAGLATASC-------- 1933
Query: 209 PMVICQLKGGTQMLCIDNSRTRELKALHLVPQYQDQNNYLQSDVPKPMTALVGRFLPAST 268
P+ + + +Q LC+ N+RT S V K + A V + P +T
Sbjct: 1934 PITVSSVVAASQQLCVTNTRT-------------------PSSVRKQLFACVPKTSPPAT 1974
Query: 269 KLNLITQQLEGALPSV 284
++ +T +LPSV
Sbjct: 1975 VISSVTSTC-SSLPSV 1989
>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
Length = 2617
Score = 33.5 bits (75), Expect = 0.47
Identities = 43/196 (21%), Positives = 67/196 (34%), Gaps = 42/196 (21%)
Query: 103 LSALEDVALLQAPQPPACNVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMI------ 156
LS + L P F SL A+ P L A ++ HP + M
Sbjct: 1822 LSTFQPANKLNKNVPTNVRSSFPVSLPLAYPHPHFALLAAQTMQQIRHPRLPMAQFGGTF 1881
Query: 157 --------PVEIKEAGGTTTSNNPEEATLQNLLAQESCCKFPSSQELEDASCCSLKKDSN 208
P ++ T+++P+ L Q S L ASC
Sbjct: 1882 SPSPNTWGPFPVRPVNPGNTNSSPKHNNTSRLPNQNGTVLPSESAGLATASC-------- 1933
Query: 209 PMVICQLKGGTQMLCIDNSRTRELKALHLVPQYQDQNNYLQSDVPKPMTALVGRFLPAST 268
P+ + + +Q LC+ N+RT S V K + A V + P +T
Sbjct: 1934 PITVSSVVAASQQLCVTNTRT-------------------PSSVRKQLFACVPKTSPPAT 1974
Query: 269 KLNLITQQLEGALPSV 284
++ +T +LPSV
Sbjct: 1975 VISSVTSTC-SSLPSV 1989
>gi|150010639 ubiquitin thiolesterase 22 [Homo sapiens]
Length = 525
Score = 32.7 bits (73), Expect = 0.80
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 307 YCDCFA----SGDFCNNCNCNNCCNNLHHDIERFKAIKACLGRNPEAFQPKIGKGQLGNV 362
+C+C +G ++ C C+ + I+ F I L + F P + G GNV
Sbjct: 292 HCNCIIDQIFTGGLQSDVTCQ-VCHGVSTTIDPFWDISLDLPGSSTPFWP-LSPGSEGNV 349
Query: 363 K--PQHNKGCNCRRSGCLKNYCECYEAQIMCSSICKCIGCKNYEESPERKTLMSMP 416
H G + CL+ + + S+ KC GC +Y+ES ++ T+ +P
Sbjct: 350 VNGESHVSGTTTL-TDCLRRFTR--PEHLGSSAKIKCSGCHSYQESTKQLTMKKLP 402
>gi|57242807 zinc finger protein 518 [Homo sapiens]
Length = 1483
Score = 32.7 bits (73), Expect = 0.80
Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 54/302 (17%)
Query: 43 EDEFHVFKEAYLGPADPKEPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPE 102
ED+ HV +E ++ K+ LH N + + + L+ G + E G
Sbjct: 359 EDQSHVVQEHL---SEEKDERLHCENNDKAPESESEKPTPLSTGQGNRAE-----EGPNA 410
Query: 103 LSALEDVALLQAPQPPACNVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVE--I 160
S A+L P NV ++ L + +G +++G H ++++P++ +
Sbjct: 411 SSGFMKTAVLG---PTLKNVMMKNNKLAVSPNYNATFMGFKMMDGKQHIVLKLVPIKQNV 467
Query: 161 KEAGGTTTSNNPEEATLQNLLAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQ 220
G + + A LQ + + EL D +K T
Sbjct: 468 CSPGSQSGAAKDGTANLQPQTLDTNGFLTGVTTELNDT--------------VYMKAATP 513
Query: 221 MLC---IDNSRTRELKALHLVPQYQDQNNYLQS-DVPKPMTALVGRFLPASTKLNLITQ- 275
C I + + K + L+ Q +NN LQ+ D K +++L + +NL T+
Sbjct: 514 FSCSSSILSGKASSEKEMTLISQ---RNNMLQTMDYEKSVSSLSATSELVTASVNLTTKF 570
Query: 276 -----------QLEGALPSVVNGSAFPSGSTLPGPPKITLAGYCDCFASGDFCNNC-NCN 323
L + P V+ G+T+ P K+ + + SGD N C N
Sbjct: 571 ETRDNVDFWGNHLTQSHPEVL-------GTTIKSPDKVNCVAKPNAYNSGDMHNYCINYG 623
Query: 324 NC 325
NC
Sbjct: 624 NC 625
>gi|21450838 SH3 and cysteine rich domain 3 [Homo sapiens]
Length = 364
Score = 31.6 bits (70), Expect = 1.8
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 307 YCDCFASGDFCNN---CNCNNCCNNLHHDIERFKAIKACLGRNPEAF 350
+CD A NN C NC N+H + + ++ C G+ P F
Sbjct: 102 FCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQRCFGKIPPGF 148
>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
Length = 2778
Score = 31.2 bits (69), Expect = 2.3
Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 40/193 (20%)
Query: 313 SGDFCNNCNCNNC-CNNLHHDIE---RFKAIKACLGRNPEAFQPKIGKGQLGNVKPQHNK 368
SGD + C C+ + E R + CL R+P QP G+ P+
Sbjct: 1834 SGDQAHRLGCGGSPCSPMPRSPEECRRLRTCSECLARHPRTLQPGDGEAS----TPRCKW 1889
Query: 369 GCNCRRSGCL--------KNYCECYEAQIMCSSIC-----------------KCIGCKNY 403
NC C+ +N C + ++ + C KC+ + +
Sbjct: 1890 CTNCPEGACIGRNGSCTSENDCRINQREVFWAGNCSEAACGAADCEQCTREGKCMWTRQF 1949
Query: 404 EESPERKTLMSM-PNYMQTGGLEGSHYLPPTKFSGLPRFSHDRRPSSCISWEVVEATCAC 462
+ + E + ++S+ P Y T + P P P+ C ++ +C
Sbjct: 1950 KRTGETRRILSVQPTYDWTCFSHSLLNVSPMPVESSPPLP---CPTPC---HLLPNCTSC 2003
Query: 463 LLAQGEEAEKEHC 475
L ++G + +HC
Sbjct: 2004 LDSKGADGGWQHC 2016
>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
Length = 480
Score = 31.2 bits (69), Expect = 2.3
Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 11/161 (6%)
Query: 5 PLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPKEPVL 64
PLPG P M+ + GP L+ P++ + LG + +E V+
Sbjct: 196 PLPG--PPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVV 253
Query: 65 HAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPACNVHF 124
A A G + A AGG G ++G P +P A+ L P+P +
Sbjct: 254 AA---AAGLEEASAAVAVGAGGAPAGPAVIG--PSLPLALAMP----LPEPEPLPLPLEV 304
Query: 125 LSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGG 165
+ LLP R P +L L P ++ +E+ E G
Sbjct: 305 VRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLG 345
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 31.2 bits (69), Expect = 2.3
Identities = 46/183 (25%), Positives = 60/183 (32%), Gaps = 38/183 (20%)
Query: 306 GYCDCFAS--GDFCNNCNCNNCCNNLHHDIERFKAIKACLGRNPEAFQPKIGKGQLG--- 360
G CDC G C+N + CN H CL + K G G
Sbjct: 1414 GSCDCDVGWRGVHCDNATTEDNCNGTCHTSAN------CLTNSDGTASCKCAAGFQGNGT 1467
Query: 361 -----NVKPQHNKGC----NCRRSGCLKNYCECYEAQ----IMCSSICKCI----GC-KN 402
N N GC +C+R+ + C C I+C I C+ GC KN
Sbjct: 1468 ICTAINACEISNGGCSAKADCKRTTPGRRVCTCKAGYTGDGIVCLEINPCLENHGGCDKN 1527
Query: 403 YE---ESPERKTLMSMPNYMQTGGLEGSHYLPPTKFSGLPRFSHDRRPSSCISWEVVEAT 459
E P + +P Y G + + TK G F + C VE T
Sbjct: 1528 AECTQTGPNQAACNCLPAYTGDGKVCTLINVCLTKNGGCSEF------AICNHTGQVERT 1581
Query: 460 CAC 462
C C
Sbjct: 1582 CTC 1584
>gi|187607364 tuftelin 1 isoform 2 [Homo sapiens]
Length = 365
Score = 30.4 bits (67), Expect = 4.0
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 432 PTKFSGLPRFSHDRRPS--SCISWEV--VEATCACLLAQGEEAEKEHCSKCLAEQMILEE 487
P FS P + P +CI+ +V + T LLA+ +EA+++H S C+A ++ L
Sbjct: 119 PNGFSQSPTALYSSPPEVDTCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVTLSR 178
Query: 488 FGR 490
+ R
Sbjct: 179 YQR 181
>gi|9910596 tuftelin 1 isoform 1 [Homo sapiens]
Length = 390
Score = 30.4 bits (67), Expect = 4.0
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 432 PTKFSGLPRFSHDRRPS--SCISWEV--VEATCACLLAQGEEAEKEHCSKCLAEQMILEE 487
P FS P + P +CI+ +V + T LLA+ +EA+++H S C+A ++ L
Sbjct: 144 PNGFSQSPTALYSSPPEVDTCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVTLSR 203
Query: 488 FGR 490
+ R
Sbjct: 204 YQR 206
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 30.4 bits (67), Expect = 4.0
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 116 QPPACNVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEA 175
+ P L++L P H SP L A V+ P P+ G TTTS + E
Sbjct: 988 EKPTIPTEKLTALRPPHPSPTATGLAALVMS----PHAPSTPMTSVILGTTTTSRSSTER 1043
Query: 176 TLQNLLAQESCCKFPSSQELEDASCCSLKKD 206
N A+ C P+S + SC L ++
Sbjct: 1044 CPPN--ARYESCACPASCKSPRPSCGPLCRE 1072
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 30.4 bits (67), Expect = 4.0
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 116 QPPACNVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEA 175
+ P L++L P H SP L A V+ P P+ G TTTS + E
Sbjct: 988 EKPTIPTEKLTALRPPHPSPTATGLAALVMS----PHAPSTPMTSVILGTTTTSRSSTER 1043
Query: 176 TLQNLLAQESCCKFPSSQELEDASCCSLKKD 206
N A+ C P+S + SC L ++
Sbjct: 1044 CPPN--ARYESCACPASCKSPRPSCGPLCRE 1072
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 30.0 bits (66), Expect = 5.2
Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 30/183 (16%)
Query: 313 SGDFCNNCNCNNCCNNLHHDIERFKAIKACLGRNPEAFQPKIGKGQLGNVK---PQHNKG 369
S + C +CNC + ++D E + A Q G Q G V H G
Sbjct: 352 SANECQSCNCYGHATDCYYDPEVDRR---------RASQSLDGTYQGGGVCIDCQHHTTG 402
Query: 370 CNCRRSGCLKNYCECYEAQIMCSSICKCIGCKNYEESPERKTLMSM----PNY------M 419
NC R CL + + +C+ C++ + L PN+ +
Sbjct: 403 VNCER--CLPGFYRSPNHPLDSPHVCRRCNCESDFTDGTCEDLTGRCYCRPNFSGERCDV 460
Query: 420 QTGGLEGSHYLPPTKFSGLPRFSHDRRPSSCISWEVVEATCACLLAQGEEAEKE-HCSKC 478
G G PT P S+D R + ++V C+ QG K+ +C
Sbjct: 461 CAEGFTGFPSCYPT-----PSSSNDTREQVLPAGQIVNCDCSAAGTQGNACRKDPRVGRC 515
Query: 479 LAE 481
L +
Sbjct: 516 LCK 518
>gi|148922852 general transcription factor IIH, polypeptide 2C [Homo
sapiens]
Length = 395
Score = 29.6 bits (65), Expect = 6.8
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 25/115 (21%)
Query: 211 VICQLKGGTQMLCIDNSRTRELKALHLVPQYQDQNNYLQSDVPKPMTALVGRFLPASTKL 270
V+ + GGT + +D S +EL HL P ++ +L+ P T
Sbjct: 210 VLARETGGTYHVILDESHYKELLTHHLSPPPASSSS---------ECSLIRMGFPQHTIA 260
Query: 271 NLITQQLEGALPSVVNGSAFPSGSTLPGPPKITLAGYCDCFASGDFCNNCNCNNC 325
+L Q A PS A G+T PG +TL GY FC C C
Sbjct: 261 SLSDQD---AKPSF--SMAHLDGNTEPG---LTLGGY--------FCPQCRAKYC 299
>gi|169206224 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 29.6 bits (65), Expect = 6.8
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 255 PMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGP 299
P + L+ LPA N ++ LEG V GS FPS TLP P
Sbjct: 279 PDSRLLQNPLPAHLTANFASEGLEG-----VPGSCFPSCGTLPFP 318
>gi|169206527 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 29.6 bits (65), Expect = 6.8
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 255 PMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGP 299
P + L+ LPA N ++ LEG V GS FPS TLP P
Sbjct: 279 PDSRLLQNPLPAHLTANFASEGLEG-----VPGSCFPSCGTLPFP 318
>gi|113424187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 29.6 bits (65), Expect = 6.8
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 255 PMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGP 299
P + L+ LPA N ++ LEG V GS FPS TLP P
Sbjct: 229 PDSRLLQNPLPAHLTANFASEGLEG-----VPGSCFPSCGTLPFP 268
>gi|109809737 general transcription factor IIH, polypeptide 2D [Homo
sapiens]
Length = 395
Score = 29.6 bits (65), Expect = 6.8
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 25/115 (21%)
Query: 211 VICQLKGGTQMLCIDNSRTRELKALHLVPQYQDQNNYLQSDVPKPMTALVGRFLPASTKL 270
V+ + GGT + +D S +EL HL P ++ +L+ P T
Sbjct: 210 VLARETGGTYHVILDESHYKELLTHHLSPPPASSSS---------ECSLIRMGFPQHTIA 260
Query: 271 NLITQQLEGALPSVVNGSAFPSGSTLPGPPKITLAGYCDCFASGDFCNNCNCNNC 325
+L Q A PS A G+T PG +TL GY FC C C
Sbjct: 261 SLSDQD---AKPSF--SMAHLDGNTEPG---LTLGGY--------FCPQCRAKYC 299
>gi|188595677 integrin, beta 2 precursor [Homo sapiens]
Length = 769
Score = 29.3 bits (64), Expect = 8.8
Identities = 51/231 (22%), Positives = 75/231 (32%), Gaps = 61/231 (26%)
Query: 210 MVICQLKGGTQMLCIDNSRTRELKALHLVPQYQDQNNYLQSDVPKPMTALVGRFLPASTK 269
+V Q+ + C D SR R L +L+ + + T +G+ T+
Sbjct: 436 IVTVQVLPQCECRCRDQSRDRSLC---------HGKGFLECGICRCDTGYIGKNCECQTQ 486
Query: 270 LNLITQQLEGA------------LPSVVNGSAFPSGSTLPGPPKITLAGYCDCFA----- 312
+Q+LEG+ L V G S +PG K+ YC+C
Sbjct: 487 -GRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPG--KLIYGQYCECDTINCER 543
Query: 313 -SGD----------FCNNCNCNNCCNNLHHDIERFKAIKACLGRNPEAFQPKIGKGQLGN 361
+G FC C C+ ER + CL NP + G+G+
Sbjct: 544 YNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCER--TTEGCL--NPRRVECS-GRGR--- 595
Query: 362 VKPQHNKGCNCRRSGCLKNY----C-ECYEAQIMCSSICKCIGCKNYEESP 407
C C C Y C EC C C C +E+ P
Sbjct: 596 --------CRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGP 638
>gi|89191865 integrin, beta 2 precursor [Homo sapiens]
Length = 769
Score = 29.3 bits (64), Expect = 8.8
Identities = 51/231 (22%), Positives = 75/231 (32%), Gaps = 61/231 (26%)
Query: 210 MVICQLKGGTQMLCIDNSRTRELKALHLVPQYQDQNNYLQSDVPKPMTALVGRFLPASTK 269
+V Q+ + C D SR R L +L+ + + T +G+ T+
Sbjct: 436 IVTVQVLPQCECRCRDQSRDRSLC---------HGKGFLECGICRCDTGYIGKNCECQTQ 486
Query: 270 LNLITQQLEGA------------LPSVVNGSAFPSGSTLPGPPKITLAGYCDCFA----- 312
+Q+LEG+ L V G S +PG K+ YC+C
Sbjct: 487 -GRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPG--KLIYGQYCECDTINCER 543
Query: 313 -SGD----------FCNNCNCNNCCNNLHHDIERFKAIKACLGRNPEAFQPKIGKGQLGN 361
+G FC C C+ ER + CL NP + G+G+
Sbjct: 544 YNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCER--TTEGCL--NPRRVECS-GRGR--- 595
Query: 362 VKPQHNKGCNCRRSGCLKNY----C-ECYEAQIMCSSICKCIGCKNYEESP 407
C C C Y C EC C C C +E+ P
Sbjct: 596 --------CRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGP 638
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 29.3 bits (64), Expect = 8.8
Identities = 38/214 (17%), Positives = 68/214 (31%), Gaps = 14/214 (6%)
Query: 185 SCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQYQDQ 244
S C+ SS+ + C + S+ CQ + SRT YQ
Sbjct: 107 STCRCQSSRTSSTSCSCQSSRTSSTSCSCQSSRTSSTCSCQTSRTSSTSC-----SYQSS 161
Query: 245 NNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPPKITL 304
T+ +S + + Q G + + + + ST T
Sbjct: 162 RTSSTCSCQSSGTSSTSCNWQSSRTSSTCSCQSSGTSSTSYSCQSSGTSSTCSCQSSGTS 221
Query: 305 AGYCDCFASGDFCNNCNCNNC-CNNLHHDIERFKAIKACLGRNPEAFQPKIGKGQLGNVK 363
+ C C +SG + C+C + ++ + + C ++ G
Sbjct: 222 STSCSCQSSGT-SSTCSCQSSGTSSTSCSWQSSRTSSTCSCQSSRTSSTSCSCQSSGT-- 278
Query: 364 PQHNKGCNCRRSGCLKNYCECYEAQIMCSSICKC 397
+ C+C+ SG C C ++ SS C C
Sbjct: 279 ---SSTCSCQSSGTSSTSCSCQSSR--TSSTCSC 307
>gi|146232000 checkpoint suppressor 1 isoform 1 [Homo sapiens]
Length = 490
Score = 29.3 bits (64), Expect = 8.8
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 110 ALLQAPQPPACNVHFLSSLLPAHRS---PAVLPLGAWVLEGASHPGVRMIPVEIKEAGGT 166
ALLQ P A + L + P ++ P V+ GA VL PGVR P+ I G T
Sbjct: 245 ALLQDPDIDAASAMMLLNTPPEIQAGFPPGVIQNGARVLSRGLFPGVR--PLPITPIGVT 302
Query: 167 TTSNNPEEATLQNLLAQESCCKFPSSQELEDASCCSLKKDSN 208
N + ++ SC S + ++ S K SN
Sbjct: 303 AAMRNGITSCRMRTESEPSCGSPVVSGDPKEDHNYSSAKSSN 344
>gi|44955921 ELK3 protein [Homo sapiens]
Length = 407
Score = 29.3 bits (64), Expect = 8.8
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 31/149 (20%)
Query: 22 LSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPKEPVLHAFNPALGADCKGQV-- 79
+S PF+S + L + +F EA +D EP+ N + G+ K
Sbjct: 233 ISSASPFSSRSPSLSPNSPLPSEHRSLFLEAACHDSDSLEPL----NLSSGSKTKSPSLP 288
Query: 80 -KAKLAGG-----------DSDGGELLGEYPGIPE-------LSALEDVALLQAPQPPAC 120
KAK G +D G + P +P +A LL P P
Sbjct: 289 PKAKKPKGLEISAPPLVLSGTDIGSIALNSPALPSGSLTPAFFTAQTPNGLLLTPSPLLS 348
Query: 121 NVHFLSSLLPAHRSPAVLPLGAWVLEGAS 149
++HF SSL P V PL L+G S
Sbjct: 349 SIHFWSSLSP------VAPLSPARLQGPS 371
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,100,837
Number of Sequences: 37866
Number of extensions: 1279569
Number of successful extensions: 3376
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3349
Number of HSP's gapped (non-prelim): 46
length of query: 508
length of database: 18,247,518
effective HSP length: 107
effective length of query: 401
effective length of database: 14,195,856
effective search space: 5692538256
effective search space used: 5692538256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.