Guide to the Human Genome
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Name: LOC730236 Sequence: fasta or formatted (318aa) NCBI GI: 169206224
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {268aa} PREDICTED: hypothetical protein
alt mRNA {318aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         35           3
 C cysteine            3.5         11           1
 D aspartate           3.5         11           3
 E glutamate           3.5         11           1
 F phenylalanine       1.9          6           1
 G glycine            13.8         44           2
 H histidine           1.9          6           1
 I isoleucine          2.8          9           1
 K lysine              4.7         15           2
 L leucine             8.8         28           2
 M methionine          1.3          4           1
 N asparagine          2.5          8           1
 P proline             8.5         27           1
 Q glutamine           3.5         11           1
 R arginine            9.7         31           2
 S serine              9.7         31           3
 T threonine           4.4         14           2
 V valine              4.1         13           1
 W tryptophan          0.6          2           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730236             1.000   PREDICTED: hypothetical protein 
LOC730236             0.825   PREDICTED: hypothetical protein 
COL2A1                0.030   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.030   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A1                0.026   alpha 1 type I collagen preproprotein 
COL11A1               0.024   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.024   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.024   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL1A2                0.024   alpha 2 type I collagen 
COL3A1                0.022   collagen type III alpha 1 preproprotein 
LOC727804             0.022   PREDICTED: hypothetical protein 
COL7A1                0.022   alpha 1 type VII collagen precursor 
COL16A1               0.022   alpha 1 type XVI collagen precursor 
COL11A2               0.021   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.021   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.021   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL22A1               0.021   collagen, type XXII, alpha 1 
COL5A2                0.019   alpha 2 type V collagen preproprotein 
WTIP                  0.019   Wilms tumor 1 interacting protein 
COL5A1                0.019   alpha 1 type V collagen preproprotein 
LOC401097             0.018   PREDICTED: hypothetical protein 
LOC401097             0.018   PREDICTED: hypothetical protein 
COL17A1               0.018   alpha 1 type XVII collagen 
FLJ10357              0.016   hypothetical protein LOC55701 
TWIST1                0.016   twist 
LOC100128105          0.016   PREDICTED: hypothetical protein 
LOC100128105          0.016   PREDICTED: hypothetical protein 
LOC100128105          0.016   PREDICTED: hypothetical protein 
COL4A4                0.016   alpha 4 type IV collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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