Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MSL2 Sequence: fasta or formatted (577aa) NCBI GI: 38570121
Description:

ring finger protein 184 isoform 1

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
Ring Finger Proteins

Other entries for this name:
alt prot [503aa] ring finger protein 184 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         31           2
 C cysteine            5.2         30           2
 D aspartate           4.9         28           2
 E glutamate           5.2         30           2
 F phenylalanine       2.3         13           1
 G glycine             4.5         26           2
 H histidine           2.1         12           2
 I isoleucine          5.7         33           2
 K lysine              7.6         44           2
 L leucine             9.2         53           3
 M methionine          1.7         10           3
 N asparagine          4.7         27           1
 P proline             6.9         40           2
 Q glutamine           2.9         17           1
 R arginine            3.3         19           1
 S serine             12.3         71           2
 T threonine           8.7         50           2
 V valine              5.4         31           1
 W tryptophan          0.2          1           1
 Y tyrosine            1.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 184 isoform 1 
MSL2                  0.863   ring finger protein 184 isoform 2 
HEG1                  0.016   HEG homolog 1 
TRIM64                0.015   tripartite motif-containing 64 
LOC642446             0.015   PREDICTED: tripartite motif-containing protein 64B-...
MUC17                 0.015   mucin 17 
MUC16                 0.014   mucin 16 
LOC646754             0.014   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.014   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.014   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.014   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.014   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.014   PREDICTED: tripartite motif-containing protein 64C-...
BIN2                  0.012   bridging integrator 2 
RAG1                  0.011   recombination activating gene 1 
CGNL1                 0.010   cingulin-like 1 
MTL5                  0.010   metallothionein-like 5, testis-specific isoform a [H...
BRCA1                 0.010   breast cancer 1, early onset isoform 2 
BRCA1                 0.010   breast cancer 1, early onset isoform 5 
BRCA1                 0.010   breast cancer 1, early onset isoform 4 
BRCA1                 0.010   breast cancer 1, early onset isoform 1 
LNX2                  0.010   ligand of numb-protein X 2 
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform c ...
MUC6                  0.009   mucin 6, gastric 
LOC100134138          0.007   PREDICTED: similar to mucin, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press