Guide to the Human Genome
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Name: LIN54 Sequence: fasta or formatted (528aa) NCBI GI: 169234721
Description:

lin-54 homolog isoform b

Referenced in:

Metallothioneins
RB1 and Related Functions

Other entries for this name:
alt prot [749aa] lin-54 homolog isoform a
alt mRNA [528aa] lin-54 homolog isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         44           3
 C cysteine            4.5         24           1
 D aspartate           1.3          7           1
 E glutamate           4.4         23           2
 F phenylalanine       2.3         12           1
 G glycine             5.5         29           3
 H histidine           0.8          4           1
 I isoleucine          5.9         31           2
 K lysine              7.8         41           2
 L leucine             6.1         32           2
 M methionine          1.5          8           1
 N asparagine          5.9         31           2
 P proline             8.5         45           2
 Q glutamine           6.6         35           3
 R arginine            3.4         18           2
 S serine              9.5         50           3
 T threonine           9.3         49           2
 V valine              7.0         37           3
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lin-54 homolog isoform b 
LIN54                 1.000   lin-54 homolog isoform b 
LIN54                 0.988   lin-54 homolog isoform a 
MTL5                  0.217   metallothionein-like 5, testis-specific isoform a [H...
LOC100294420          0.033   PREDICTED: similar to mucin 2 
MUC2                  0.031   mucin 2 precursor 
COL27A1               0.026   collagen, type XXVII, alpha 1 
MUC17                 0.025   mucin 17 
LOC100133761          0.024   PREDICTED: similar to Mucin-6, partial 
LOC100128719          0.022   PREDICTED: hypothetical protein, partial 
LOC100128719          0.022   PREDICTED: hypothetical protein, partial 
SRCAP                 0.022   Snf2-related CBP activator protein 
GLTSCR1               0.021   glioma tumor suppressor candidate region gene 1 [Ho...
MUC6                  0.020   mucin 6, gastric 
LOC647546             0.019   PREDICTED: hypothetical protein 
MUC5AC                0.018   mucin 5AC 
LOC732156             0.017   PREDICTED: similar to Mucin-3A 
MUC3B                 0.017   PREDICTED: mucin 3B, cell surface associated, parti...
MUC5B                 0.017   mucin 5, subtype B, tracheobronchial 
EP400                 0.016   E1A binding protein p400 
MUC16                 0.016   mucin 16 
MUC3A                 0.016   PREDICTED: mucin 3A, intestinal 
C11orf30              0.016   EMSY protein 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
ATF7IP                0.015   activating transcription factor 7 interacting protei...
C11orf24              0.015   hypothetical protein LOC53838 
LOC284297             0.015   hypothetical protein LOC284297 
EP300                 0.015   E1A binding protein p300 
LOC100131514          0.015   PREDICTED: similar to hCG1747327, partial 
KIAA2026              0.015   hypothetical protein LOC158358 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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