Guide to the Human Genome
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Name: ITGB2 Sequence: fasta or formatted (769aa) NCBI GI: 188595677
Description:

integrin, beta 2 precursor

Referenced in:

Complement
Integrins

Other entries for this name:
alt mRNA [769aa] integrin, beta 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         37           3
 C cysteine            7.4         57           1
 D aspartate           5.5         42           2
 E glutamate           6.0         46           2
 F phenylalanine       3.6         28           1
 G glycine             9.1         70           2
 H histidine           1.7         13           1
 I isoleucine          4.4         34           2
 K lysine              5.3         41           2
 L leucine             9.5         73           3
 M methionine          1.3         10           2
 N asparagine          5.2         40           2
 P proline             5.2         40           2
 Q glutamine           4.8         37           2
 R arginine            5.9         45           2
 S serine              6.1         47           2
 T threonine           5.1         39           3
 V valine              5.9         45           2
 W tryptophan          0.7          5           1
 Y tyrosine            2.6         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin, beta 2 precursor 
ITGB2                 1.000   integrin, beta 2 precursor 
ITGB1                 0.441   integrin beta 1 isoform 1A precursor 
ITGB1                 0.441   integrin beta 1 isoform 1A precursor 
ITGB1                 0.434   integrin beta 1 isoform 1D precursor 
ITGB7                 0.433   integrin, beta 7 
ITGB1                 0.427   integrin beta 1 isoform 1C-1 precursor 
ITGB1                 0.427   integrin beta 1 isoform 1B precursor 
ITGB1                 0.427   integrin beta 1 isoform 1C-2 precursor 
ITGB3                 0.345   integrin beta chain, beta 3 precursor 
ITGB6                 0.331   integrin, beta 6 
ITGB5                 0.317   integrin, beta 5 
ITGB8                 0.255   integrin, beta 8 precursor 
ITGB4                 0.231   integrin beta 4 isoform 2 precursor 
ITGB4                 0.231   integrin beta 4 isoform 1 precursor 
ITGB4                 0.231   integrin beta 4 isoform 3 precursor 
ITGBL1                0.067   integrin, beta-like 1 (with EGF-like repeat domains) ...
TNXB                  0.039   tenascin XB isoform 1 precursor 
TNC                   0.038   tenascin C precursor 
ODZ1                  0.036   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.036   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ1                  0.036   odz, odd Oz/ten-m homolog 1 isoform 1 
WIF1                  0.031   WNT inhibitory factor 1 precursor 
TNR                   0.031   tenascin R 
ODZ4                  0.031   odz, odd Oz/ten-m homolog 4 
SCARF2                0.029   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.029   scavenger receptor class F, member 2 isoform 2 [Homo...
MEGF11                0.028   multiple EGF-like-domains 11 
ODZ2                  0.028   odz, odd Oz/ten-m homolog 2 
MEGF6                 0.026   EGF-like-domain, multiple 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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