LIN54 9298

Name: LIN54	Sequence: fasta or formatted (749aa)		NCBI GI: 169234719
Description: lin-54 homolog isoform a		Referenced in: Metallothioneins RB1 and Related Functions
Other entries for this name: alt prot [528aa] lin-54 homolog isoform b alt prot [528aa] lin-54 homolog isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.5 56 3 C cysteine 3.2 24 1 D aspartate 2.1 16 3 E glutamate 4.3 32 2 F phenylalanine 1.7 13 1 G glycine 5.6 42 3 H histidine 0.8 6 1 I isoleucine 6.7 50 2 K lysine 7.2 54 2 L leucine 7.1 53 2 M methionine 1.3 10 1 N asparagine 5.6 42 2 P proline 8.4 63 2 Q glutamine 7.3 55 3 R arginine 2.5 19 2 S serine 9.3 70 3 T threonine 10.4 78 3 V valine 7.6 57 3 W tryptophan 0.0 0 0 Y tyrosine 1.2 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lin-54 homolog isoform a LIN54 0.703 lin-54 homolog isoform b LIN54 0.703 lin-54 homolog isoform b MTL5 0.154 metallothionein-like 5, testis-specific isoform a [H... LOC100294420 0.029 PREDICTED: similar to mucin 2 MUC17 0.029 mucin 17 C11orf30 0.029 EMSY protein MUC2 0.028 mucin 2 precursor MUC4 0.026 mucin 4 isoform a MUC5B 0.025 mucin 5, subtype B, tracheobronchial WNK1 0.021 WNK lysine deficient protein kinase 1 HCFC1 0.021 host cell factor 1 MUC5AC 0.020 mucin 5AC MUC6 0.019 mucin 6, gastric SRCAP 0.019 Snf2-related CBP activator protein NACA 0.019 nascent polypeptide-associated complex alpha subuni... FAM186A 0.019 family with sequence similarity 186, member A [Homo... MUC16 0.019 mucin 16 GLTSCR1 0.019 glioma tumor suppressor candidate region gene 1 [Ho... KIAA2026 0.019 hypothetical protein LOC158358 EP400 0.019 E1A binding protein p400 LOC100128719 0.018 PREDICTED: hypothetical protein, partial LOC100128719 0.018 PREDICTED: hypothetical protein, partial MUC3B 0.018 PREDICTED: mucin 3B, cell surface associated, parti... LOC100133761 0.017 PREDICTED: similar to Mucin-6, partial COL27A1 0.017 collagen, type XXVII, alpha 1 TAF4B 0.017 TAF4b RNA polymerase II, TATA box binding protein (... ZNF532 0.017 zinc finger protein 532 LOC100133790 0.017 PREDICTED: intestinal mucin-like, partial LOC100131514 0.016 PREDICTED: similar to hCG1747327, partial Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.