Guide to the Human Genome
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Name: TUFT1 Sequence: fasta or formatted (390aa) NCBI GI: 9910596
Description:

tuftelin 1 isoform 1

Referenced in:

Bone and Related Tissues

Other entries for this name:
alt prot [365aa] tuftelin 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         29           2
 C cysteine            1.3          5           1
 D aspartate           4.9         19           2
 E glutamate          12.3         48           2
 F phenylalanine       0.8          3           1
 G glycine             4.4         17           1
 H histidine           3.8         15           2
 I isoleucine          5.1         20           2
 K lysine              7.2         28           1
 L leucine            10.0         39           2
 M methionine          2.3          9           1
 N asparagine          3.8         15           2
 P proline             2.8         11           2
 Q glutamine           7.7         30           2
 R arginine            6.7         26           2
 S serine              7.4         29           2
 T threonine           3.8         15           1
 V valine              6.4         25           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tuftelin 1 isoform 1 
TUFT1                 0.917   tuftelin 1 isoform 2 
GCOM1                 0.118   GRINL1A combined protein isoform 2 
GCOM1                 0.118   GRINL1A combined protein isoform 1 
GCOM1                 0.118   GRINL1A upstream protein isoform 7 
GCOM1                 0.075   GRINL1A combined protein isoform 8 
CCDC68                0.062   coiled-coil domain containing 68 
CCDC68                0.062   coiled-coil domain containing 68 
LOC645202             0.054   PREDICTED: hypothetical protein LOC645202 
LOC400352             0.050   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.050   PREDICTED: similar to Putative golgin subfamily A m...
GOLGA4                0.050   golgi autoantigen, golgin subfamily a, 4 
TRIP11                0.050   thyroid hormone receptor interactor 11 
KIF16B                0.050   kinesin-like motor protein C20orf23 
MYH7                  0.049   myosin, heavy chain 7, cardiac muscle, beta 
LOC440243             0.047   PREDICTED: Putative golgin subfamily A member 6-lik...
CCDC67                0.047   coiled-coil domain containing 67 
LOC727832             0.047   golgi autoantigen, golgin subfamily a-like 
CEP164                0.046   centrosomal protein 164kDa 
EPS15                 0.046   epidermal growth factor receptor pathway substrate 15...
CENPF                 0.046   centromere protein F 
CCDC18                0.046   sarcoma antigen NY-SAR-41 
CLIP1                 0.045   restin isoform b 
CLIP1                 0.045   restin isoform a 
LOC283767             0.045   golgi autoantigen, golgin subfamily a-like 
GOLGA1                0.045   golgin 97 
MYH14                 0.043   myosin, heavy chain 14 isoform 1 
MYH14                 0.043   myosin, heavy chain 14 isoform 2 
MYH14                 0.043   myosin, heavy chain 14 isoform 3 
MYH13                 0.043   myosin, heavy polypeptide 13, skeletal muscle [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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