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Search of human proteins with 33359680
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33359680 ephrin A1 isoform b precursor [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33359680 ephrin A1 isoform b precursor [Homo sapiens] 391 e-109
gi|33359682 ephrin A1 isoform a precursor [Homo sapiens] 378 e-105
gi|4503487 ephrin-A5 [Homo sapiens] 143 7e-35
gi|27894381 ephrin-A2 precursor [Homo sapiens] 134 3e-32
gi|4826708 ephrin A3 [Homo sapiens] 132 1e-31
gi|100913200 ephrin A4 isoform c [Homo sapiens] 111 4e-25
gi|33359686 ephrin A4 isoform b [Homo sapiens] 111 4e-25
gi|4885197 ephrin A4 isoform a [Homo sapiens] 111 4e-25
gi|4758248 ephrin-B1 precursor [Homo sapiens] 71 6e-13
gi|4758250 ephrin B2 [Homo sapiens] 67 9e-12
gi|4503489 ephrin-B3 precursor [Homo sapiens] 64 7e-11
gi|27312029 hypothetical protein LOC145376 [Homo sapiens] 30 0.89
gi|150456444 hypothetical protein LOC57578 [Homo sapiens] 30 1.2
gi|209977084 REST corepressor 3 isoform c [Homo sapiens] 29 2.6
gi|209977082 REST corepressor 3 isoform b [Homo sapiens] 29 2.6
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 29 2.6
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 29 2.6
gi|57863275 vacuolar protein sorting 8 homolog isoform b [Homo s... 29 2.6
gi|57863277 vacuolar protein sorting 8 homolog isoform a [Homo s... 29 2.6
gi|27734799 REST corepressor 2 [Homo sapiens] 29 2.6
gi|5174409 CD2 antigen (cytoplasmic tail) binding protein 2 [Hom... 28 4.4
gi|41281571 synovial sarcoma, X breakpoint 2 interacting protein... 27 7.5
gi|4826702 desmocollin 1 isoform Dsc1b preproprotein [Homo sapiens] 27 7.5
gi|13435361 desmocollin 1 isoform Dsc1a preproprotein [Homo sapi... 27 7.5
gi|20149698 l(3)mbt-like 2 [Homo sapiens] 27 9.8
gi|93204881 Rab interacting lysosomal protein [Homo sapiens] 27 9.8
gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens] 27 9.8
gi|221139815 LEM domain containing 2 isoform 2 [Homo sapiens] 27 9.8
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 27 9.8
>gi|33359680 ephrin A1 isoform b precursor [Homo sapiens]
Length = 183
Score = 391 bits (1004), Expect = e-109
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA 60
MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
Sbjct: 1 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA 60
Query: 61 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF 120
DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
Sbjct: 61 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF 120
Query: 121 KEGHSYYYISHSPQAHDNPQEKRLAADDPEVRVLHSIGHSAAPRLFPLAWTVLLLPLLLL 180
KEGHSYYYISHSPQAHDNPQEKRLAADDPEVRVLHSIGHSAAPRLFPLAWTVLLLPLLLL
Sbjct: 121 KEGHSYYYISHSPQAHDNPQEKRLAADDPEVRVLHSIGHSAAPRLFPLAWTVLLLPLLLL 180
Query: 181 QTP 183
QTP
Sbjct: 181 QTP 183
>gi|33359682 ephrin A1 isoform a precursor [Homo sapiens]
Length = 205
Score = 378 bits (971), Expect = e-105
Identities = 183/205 (89%), Positives = 183/205 (89%), Gaps = 22/205 (10%)
Query: 1 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA 60
MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
Sbjct: 1 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA 60
Query: 61 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF 120
DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
Sbjct: 61 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF 120
Query: 121 KEGHSYYYIS----------------------HSPQAHDNPQEKRLAADDPEVRVLHSIG 158
KEGHSYYYIS HSPQAHDNPQEKRLAADDPEVRVLHSIG
Sbjct: 121 KEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKRLAADDPEVRVLHSIG 180
Query: 159 HSAAPRLFPLAWTVLLLPLLLLQTP 183
HSAAPRLFPLAWTVLLLPLLLLQTP
Sbjct: 181 HSAAPRLFPLAWTVLLLPLLLLQTP 205
>gi|4503487 ephrin-A5 [Homo sapiens]
Length = 228
Score = 143 bits (361), Expect = 7e-35
Identities = 65/117 (55%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 14 SLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVE 73
S A ADR+ V+WNSSNP+F+ DY I V +NDY+D+ CPHYED SV + E+Y+LY+V
Sbjct: 25 SKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDVFCPHYED-SVPEDKTERYVLYMVN 83
Query: 74 HEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYIS 130
+ Y C SK RW+CNRP + +GP K SEKFQ FTPF+LG EF+ G Y+YIS
Sbjct: 84 FDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYIS 140
>gi|27894381 ephrin-A2 precursor [Homo sapiens]
Length = 213
Score = 134 bits (338), Expect = 3e-32
Identities = 75/180 (41%), Positives = 96/180 (53%), Gaps = 22/180 (12%)
Query: 16 AAADRHTVFWNSSNPKFR------NEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYIL 69
A +DR+ V+WN SNP+F YT+ V +NDY+DI CPHY ME Y+L
Sbjct: 32 ANSDRYAVYWNRSNPRFHAGAGDDGGGYTVEVSINDYLDIYCPHYGAPLPPAERMEHYVL 91
Query: 70 YLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYI 129
Y+V E + C + + RW+CNRP+A GP K SEKFQ FTPF+LG EF+ GH YYYI
Sbjct: 92 YMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYI 151
Query: 130 SHS-PQAHDNP-----------QEKRLAADDPEVRVLHSIGHSAAPRLF----PLAWTVL 173
S + P A D P E A +P +S RLF P+ WT+L
Sbjct: 152 SATPPNAVDRPCLRLKVYVRPTNETLYEAPEPIFTSNNSCSSPGGCRLFLSTIPVLWTLL 211
>gi|4826708 ephrin A3 [Homo sapiens]
Length = 238
Score = 132 bits (333), Expect = 1e-31
Identities = 65/131 (49%), Positives = 78/131 (59%), Gaps = 8/131 (6%)
Query: 7 PLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA--- 63
PLL A +RH V+WNSSN R E YT+ V +NDY+DI CPHY V A
Sbjct: 19 PLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPG 78
Query: 64 ----MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKE 119
EQY+LY+V Y+ C S+ RW+CNRP A H P K SEKFQR++ F+LG E
Sbjct: 79 PGGGAEQYVLYMVSRNGYRTCNA-SQGFKRWECNRPHAPHSPIKFSEKFQRYSAFSLGYE 137
Query: 120 FKEGHSYYYIS 130
F GH YYYIS
Sbjct: 138 FHAGHEYYYIS 148
>gi|100913200 ephrin A4 isoform c [Homo sapiens]
Length = 193
Score = 111 bits (277), Expect = 4e-25
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 5/128 (3%)
Query: 4 LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63
LWA LG ++ RH V+WNSSNP+ D + + LNDY+DI+CPHYE +
Sbjct: 11 LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
Query: 64 MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
E + LY+V+ Y+ CQ + + RW C+ P G + SEK QRFTPF+LG EF
Sbjct: 71 -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
Query: 123 GHSYYYIS 130
G +YYYIS
Sbjct: 127 GETYYYIS 134
>gi|33359686 ephrin A4 isoform b [Homo sapiens]
Length = 207
Score = 111 bits (277), Expect = 4e-25
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 5/128 (3%)
Query: 4 LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63
LWA LG ++ RH V+WNSSNP+ D + + LNDY+DI+CPHYE +
Sbjct: 11 LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
Query: 64 MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
E + LY+V+ Y+ CQ + + RW C+ P G + SEK QRFTPF+LG EF
Sbjct: 71 -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
Query: 123 GHSYYYIS 130
G +YYYIS
Sbjct: 127 GETYYYIS 134
>gi|4885197 ephrin A4 isoform a [Homo sapiens]
Length = 201
Score = 111 bits (277), Expect = 4e-25
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 5/128 (3%)
Query: 4 LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63
LWA LG ++ RH V+WNSSNP+ D + + LNDY+DI+CPHYE +
Sbjct: 11 LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
Query: 64 MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
E + LY+V+ Y+ CQ + + RW C+ P G + SEK QRFTPF+LG EF
Sbjct: 71 -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
Query: 123 GHSYYYIS 130
G +YYYIS
Sbjct: 127 GETYYYIS 134
>gi|4758248 ephrin-B1 precursor [Homo sapiens]
Length = 346
Score = 70.9 bits (172), Expect = 6e-13
Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 2 EFLWAPLLGLCCSLA---AADRHTVFWNSSNPKFRN-EDYTIHVQLNDYVDIICPHYEDH 57
++L A ++ C LA A + V W+S NPKF + + I+ ++ D +DIICP E
Sbjct: 11 KWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAE-- 68
Query: 58 SVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLG 117
A E Y LYLV E+ C V CNRP + + + KFQ F+P +G
Sbjct: 69 --AGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEI---RFTIKFQEFSPNYMG 123
Query: 118 KEFKEGHSYYYISHS 132
EFK+ H YY S S
Sbjct: 124 LEFKKHHDYYITSTS 138
>gi|4758250 ephrin B2 [Homo sapiens]
Length = 333
Score = 67.0 bits (162), Expect = 9e-12
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 2 EFLWAPLLGLCCSLAAAD--RHTVFWNSSNPKFR-NEDYTIHVQLNDYVDIICPHYEDHS 58
++ W L+ LC + + ++WNSSN KF + ++ Q+ D +DIICP + +
Sbjct: 10 KYCWGVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKT 69
Query: 59 VADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 118
V E Y +Y+V+ ++ C + ++ C +P K + KFQ F+P G
Sbjct: 70 VGQ--YEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDI---KFTIKFQEFSPNLWGL 124
Query: 119 EFKEGHSYYYISHS 132
EF++ YY IS S
Sbjct: 125 EFQKNKDYYIISTS 138
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 63.9 bits (154), Expect = 7e-11
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 8 LLGLCCSLAAADRHTVFWNSSNPKFRNED-YTIHVQLNDYVDIICPHYED---HSVADAA 63
LLG+ ++ V+WNS+N +F+ E Y ++ Q+ D +D++CP HS +
Sbjct: 18 LLGVLGLVSGLSLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPN-- 75
Query: 64 MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEG 123
E Y LYLV + + C+ + C+RP + + KFQ ++P G EF+
Sbjct: 76 YEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDL---RFTIKFQEYSPNLWGHEFRSH 132
Query: 124 HSYYYISHS 132
H YY I+ S
Sbjct: 133 HDYYIIATS 141
>gi|27312029 hypothetical protein LOC145376 [Homo sapiens]
Length = 422
Score = 30.4 bits (67), Expect = 0.89
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 70 YLVEHEEYQLCQPQSKDQVRW-QCNRPSAKHGPEKLSEKFQRFTPFTLGKEF-KEGHSYY 127
YL++ +L KD+ R + R +A+ + L + FTP KE K+G + +
Sbjct: 20 YLMDQLGLRLGMWYWKDETRTLEFRRFAAEDSVQWLLKHHPHFTPAAEVKEKGKKGKAVH 79
Query: 128 YISHSPQAHDNPQEKRLAA-DDPEVRVLHSIGHSAAPRLFPLAWTVLLL 175
+ A D +KRLAA DD + + G L + + LLL
Sbjct: 80 FAETDGPASDRLTDKRLAAKDDKSAKAVEKRGQQGTITLDDVKFVTLLL 128
>gi|150456444 hypothetical protein LOC57578 [Homo sapiens]
Length = 2458
Score = 30.0 bits (66), Expect = 1.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 23 VFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYIL 69
+FW N F ++D+ + + + V +IC + HSV + +Y L
Sbjct: 866 IFWTIINGNFNSKDWKMRFEAVEKVAVICRFLDIHSVTKNHLLKYSL 912
>gi|209977084 REST corepressor 3 isoform c [Homo sapiens]
Length = 449
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 57 HSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPF 114
HS+ DA +++YI E Y + Q+ + W KH EK FTPF
Sbjct: 94 HSIPDAKLDEYIAIAKEKHGYNV--EQALGMLFWH------KHNIEKSLADLPNFTPF 143
>gi|209977082 REST corepressor 3 isoform b [Homo sapiens]
Length = 436
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 57 HSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPF 114
HS+ DA +++YI E Y + Q+ + W KH EK FTPF
Sbjct: 94 HSIPDARLDEYIAIAKEKHGYNV--EQALGMLFWH------KHNIEKSLADLPNFTPF 143
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 57 HSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPF 114
HS+ DA +++YI E Y + Q+ + W KH EK FTPF
Sbjct: 94 HSIPDAKLDEYIAIAKEKHGYNV--EQALGMLFWH------KHNIEKSLADLPNFTPF 143
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 57 HSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPF 114
HS+ DA +++YI E Y + Q+ + W KH EK FTPF
Sbjct: 36 HSIPDAKLDEYIAIAKEKHGYNV--EQALGMLFWH------KHNIEKSLADLPNFTPF 85
>gi|57863275 vacuolar protein sorting 8 homolog isoform b [Homo
sapiens]
Length = 1426
Score = 28.9 bits (63), Expect = 2.6
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 21/117 (17%)
Query: 45 DYVDIICPHYE------DHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAK 98
DY I Y+ D + + Y + ++++E C + + Q RW C + S+
Sbjct: 1254 DYCSICLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKE---CTVEFEGQTRWTCYKCSSS 1310
Query: 99 HGPEKLSE-----KFQRFTPFTLGKEFKEGHSYYYISHSPQAHDNPQEKRLAADDPE 150
+ KLSE K R TP + K SY+ P A E L DP+
Sbjct: 1311 NKVGKLSENSSEIKKGRITP----SQVKMSPSYHQSKGDPTAKKGTSEPVL---DPQ 1360
>gi|57863277 vacuolar protein sorting 8 homolog isoform a [Homo
sapiens]
Length = 1428
Score = 28.9 bits (63), Expect = 2.6
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 21/117 (17%)
Query: 45 DYVDIICPHYE------DHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAK 98
DY I Y+ D + + Y + ++++E C + + Q RW C + S+
Sbjct: 1256 DYCSICLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKE---CTVEFEGQTRWTCYKCSSS 1312
Query: 99 HGPEKLSE-----KFQRFTPFTLGKEFKEGHSYYYISHSPQAHDNPQEKRLAADDPE 150
+ KLSE K R TP + K SY+ P A E L DP+
Sbjct: 1313 NKVGKLSENSSEIKKGRITP----SQVKMSPSYHQSKGDPTAKKGTSEPVL---DPQ 1362
>gi|27734799 REST corepressor 2 [Homo sapiens]
Length = 523
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 56 DHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPF 114
+H V+DA +++YI E Y + Q+ + W KH EK FTPF
Sbjct: 81 NHCVSDAKLDKYIAMAKEKHGYNI--EQALGMLLWH------KHDVEKSLADLANFTPF 131
>gi|5174409 CD2 antigen (cytoplasmic tail) binding protein 2 [Homo
sapiens]
Length = 341
Score = 28.1 bits (61), Expect = 4.4
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 105 SEKFQRFTPFTLGKEFKEGH----SYYYISHSPQAHDN-------------PQEKRLAAD 147
SE R TPF L +E +EGH Y+++ Q D+ P +R A+D
Sbjct: 81 SEGGVRITPFNLQEEMEEGHFDADGNYFLNRDAQIRDSWLDNIDWVKIRERPPGQRQASD 140
Query: 148 DPEVRVLHSIGHSAAPRLFPLAWTVLLLP 176
E L SA L L LLLP
Sbjct: 141 SEEEDSLGQTSMSAQALLEGL--LELLLP 167
>gi|41281571 synovial sarcoma, X breakpoint 2 interacting protein
[Homo sapiens]
Length = 614
Score = 27.3 bits (59), Expect = 7.5
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 18 ADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEY 77
AD W + + RNED + LNDY + + + + A + +L ++ E
Sbjct: 235 ADGKRGSWRTGKTEARNEDEMYKILLNDY-----EYRQKQILMENAELKKVLQQMKKEMI 289
Query: 78 QLCQPQSK 85
L PQ K
Sbjct: 290 SLLSPQKK 297
>gi|4826702 desmocollin 1 isoform Dsc1b preproprotein [Homo sapiens]
Length = 840
Score = 27.3 bits (59), Expect = 7.5
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 17 AADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILY 70
AA +T+F++ S P E + + D DI C S+ EQ+ LY
Sbjct: 162 AAQNYTIFYSISGPGVDKEPFNLFYIEKDTGDIFC----TRSIDREKYEQFALY 211
>gi|13435361 desmocollin 1 isoform Dsc1a preproprotein [Homo
sapiens]
Length = 894
Score = 27.3 bits (59), Expect = 7.5
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 17 AADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILY 70
AA +T+F++ S P E + + D DI C S+ EQ+ LY
Sbjct: 162 AAQNYTIFYSISGPGVDKEPFNLFYIEKDTGDIFC----TRSIDREKYEQFALY 211
>gi|20149698 l(3)mbt-like 2 [Homo sapiens]
Length = 705
Score = 26.9 bits (58), Expect = 9.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 13 CSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDY 46
C+L D H + W + N K TIH + D+
Sbjct: 260 CNLGTVDVHPIGWCAINSKILVPPRTIHAKFTDW 293
>gi|93204881 Rab interacting lysosomal protein [Homo sapiens]
Length = 401
Score = 26.9 bits (58), Expect = 9.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 82 PQSKDQVRWQCNRPSAKHGPE 102
PQ+K++ R Q RP +HG E
Sbjct: 188 PQAKERARGQAGRPGHQHGQE 208
>gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
Length = 503
Score = 26.9 bits (58), Expect = 9.8
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 31 KFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVR 89
K E+ ++ + +D++ HY D + ME+Y + H L PQS+ +++
Sbjct: 403 KLEEEEQAMYEMVKKIIDVVQDHYVDW---EQDMERYPYVGILHVRDSLIPPQSRRRMK 458
>gi|221139815 LEM domain containing 2 isoform 2 [Homo sapiens]
Length = 201
Score = 26.9 bits (58), Expect = 9.8
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 31 KFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVR 89
K E+ ++ + +D++ HY D + ME+Y + H L PQS+ +++
Sbjct: 101 KLEEEEQAMYEMVKKIIDVVQDHYVDW---EQDMERYPYVGILHVRDSLIPPQSRRRMK 156
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 74 HEEYQLCQPQSKDQVRWQCNR-------PSAKHG 100
HE QLC+P V W+C + +AKHG
Sbjct: 1559 HERLQLCRPSLYLPVWWECGKHDRDLLIGTAKHG 1592
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,882,280
Number of Sequences: 37866
Number of extensions: 344309
Number of successful extensions: 847
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 30
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.