Guide to the Human Genome
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Name: VPS8 Sequence: fasta or formatted (1426aa) NCBI GI: 57863275
Description:

vacuolar protein sorting 8 homolog isoform b

Referenced in:

ER, Golgi, and the Secretory Pathway
WD Repeat Proteins

Other entries for this name:
alt prot [1428aa] vacuolar protein sorting 8 homolog isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         78           2
 C cysteine            2.5         36           2
 D aspartate           5.7         81           3
 E glutamate           7.4        106           3
 F phenylalanine       4.3         61           1
 G glycine             4.4         63           2
 H histidine           2.9         42           1
 I isoleucine          6.0         85           2
 K lysine              5.8         83           3
 L leucine            12.5        178           3
 M methionine          2.5         36           2
 N asparagine          3.6         52           2
 P proline             3.9         56           3
 Q glutamine           6.0         85           3
 R arginine            3.9         56           2
 S serine              8.2        117           3
 T threonine           4.7         67           3
 V valine              6.5         92           2
 W tryptophan          0.8         11           1
 Y tyrosine            2.9         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vacuolar protein sorting 8 homolog isoform b 
VPS8                  0.998   vacuolar protein sorting 8 homolog isoform a 
RNF167                0.006   ring finger protein 167 
DPF1                  0.004   D4, zinc and double PHD fingers family 1 isoform c ...
DPF1                  0.004   D4, zinc and double PHD fingers family 1 isoform a ...
CHD4                  0.004   chromodomain helicase DNA binding protein 4 
FBXW4                 0.004   F-box and WD repeat domain containing 4 
RNF130                0.004   ring finger protein 130 
GNB5                  0.004   guanine nucleotide-binding protein, beta-5 subunit is...
GNB5                  0.004   guanine nucleotide-binding protein, beta-5 subunit i...
DPF1                  0.004   D4, zinc and double PHD fingers family 1 isoform b ...
ZNRF4                 0.003   zinc and ring finger 4 
WDR69                 0.003   WD repeat domain 69 
RNF133                0.003   ring finger protein 133 
WDR5                  0.003   WD repeat domain 5 
WDR5                  0.003   WD repeat domain 5 
CHD5                  0.003   chromodomain helicase DNA binding protein 5 
KIF16B                0.003   kinesin-like motor protein C20orf23 
RNF128                0.003   ring finger protein 128 isoform 1 
RNF128                0.003   ring finger protein 128 isoform 2 
RNF13                 0.003   ring finger protein 13 
RNF13                 0.003   ring finger protein 13 
CHD3                  0.003   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.003   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.003   chromodomain helicase DNA binding protein 3 isoform...
WDR36                 0.002   WD repeat domain 36 
MLL3                  0.002   myeloid/lymphoid or mixed-lineage leukemia 3 
FBXW10                0.002   F-box and WD-40 domain protein 10 
CDRT1                 0.002   CMT1A duplicated region transcript 1 
WDR5B                 0.002   WD repeat domain 5B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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