Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RCOR3 Sequence: fasta or formatted (449aa) NCBI GI: 209977084
Description:

REST corepressor 3 isoform c

Not currently referenced in the text

Other entries for this name:
alt prot {553aa} REST corepressor 3 isoform a
alt prot {436aa} REST corepressor 3 isoform b
alt prot {495aa} REST corepressor 3 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         30           2
 C cysteine            1.1          5           1
 D aspartate           6.0         27           3
 E glutamate           9.1         41           4
 F phenylalanine       3.1         14           2
 G glycine             8.0         36           4
 H histidine           2.9         13           2
 I isoleucine          3.3         15           1
 K lysine              8.0         36           2
 L leucine             6.5         29           2
 M methionine          2.9         13           2
 N asparagine          5.1         23           1
 P proline             4.7         21           2
 Q glutamine           5.8         26           2
 R arginine            4.7         21           3
 S serine              8.0         36           2
 T threonine           4.5         20           2
 V valine              5.1         23           2
 W tryptophan          1.3          6           1
 Y tyrosine            3.1         14           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   REST corepressor 3 isoform c 
RCOR3                 0.977   REST corepressor 3 isoform a 
RCOR3                 0.842   REST corepressor 3 isoform d 
RCOR3                 0.799   REST corepressor 3 isoform b 
RCOR1                 0.535   REST corepressor 1 
RCOR2                 0.495   REST corepressor 2 
LOC441644             0.111   PREDICTED: similar to hCG2041217 
LOC441644             0.111   PREDICTED: similar to hCG2041217 
LOC441644             0.111   PREDICTED: similar to REST corepressor 2 
NCOR2                 0.084   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.084   nuclear receptor co-repressor 2 isoform 1 
NCOR1                 0.076   nuclear receptor co-repressor 1 
MTA2                  0.045   metastasis-associated protein 2 
MIER3                 0.045   mesoderm induction early response 1, family member 3...
TRERF1                0.044   transcriptional regulating factor 1 
ZNF541                0.044   zinc finger protein 541 
MTA3                  0.042   metastasis associated 1 family, member 3 
MIER2                 0.041   mesoderm induction early response 1, family member 2...
MTA1                  0.036   metastasis associated protein 
C14orf43              0.030   hypothetical protein LOC91748 
C14orf43              0.030   hypothetical protein LOC91748 
MIER1                 0.029   mesoderm induction early response 1 isoform g [Homo...
MIER1                 0.029   mesoderm induction early response 1 isoform i [Homo...
MIER1                 0.029   mesoderm induction early response 1 isoform h [Homo...
MIER1                 0.029   mesoderm induction early response 1 isoform a [Homo...
MIER1                 0.029   mesoderm induction early response 1 isoform f [Homo...
MIER1                 0.029   mesoderm induction early response 1 isoform e [Homo...
MIER1                 0.029   mesoderm induction early response 1 isoform d [Homo...
MIER1                 0.029   mesoderm induction early response 1 isoform c [Homo...
MIER1                 0.029   mesoderm induction early response 1 isoform b [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press