Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RILP Sequence: fasta or formatted (401aa) NCBI GI: 93204881
Description:

Rab interacting lysosomal protein

Referenced in:

Lysosomes and Related Organelles
Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         57           3
 C cysteine            0.7          3           1
 D aspartate           3.5         14           2
 E glutamate          13.2         53           3
 F phenylalanine       1.7          7           2
 G glycine             7.5         30           2
 H histidine           2.2          9           1
 I isoleucine          1.0          4           1
 K lysine              4.0         16           2
 L leucine            11.7         47           3
 M methionine          1.0          4           1
 N asparagine          1.2          5           1
 P proline             8.0         32           4
 Q glutamine           8.0         32           2
 R arginine            9.7         39           2
 S serine              5.0         20           2
 T threonine           2.2          9           1
 V valine              3.2         13           2
 W tryptophan          1.0          4           1
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rab interacting lysosomal protein 
RILPL1                0.136   Rab interacting lysosomal protein-like 1 
RBM25                 0.035   RNA binding motif protein 25 
RIMBP3B               0.035   RIMS binding protein 3B 
RIMBP3C               0.035   RIMS binding protein 3C 
RIMBP3                0.035   DKFZP434H0735 protein 
SPAG9                 0.032   sperm associated antigen 9 isoform 1 
SPAG9                 0.032   sperm associated antigen 9 isoform 3 
MAPK8IP3              0.032   mitogen-activated protein kinase 8 interacting prote...
MAPK8IP3              0.032   mitogen-activated protein kinase 8 interacting prote...
BSN                   0.032   bassoon protein 
AZI1                  0.032   5-azacytidine induced 1 isoform a 
CEP164                0.032   centrosomal protein 164kDa 
LOC653720             0.031   PREDICTED: similar to Golgin subfamily A member 8-l...
TCHH                  0.031   trichohyalin 
CROCC                 0.031   ciliary rootlet coiled-coil 
FAM184B               0.031   hypothetical protein LOC27146 
GRIPAP1               0.031   GRIP1 associated protein 1 isoform 1 
GOLGA8E               0.031   golgi autoantigen, golgin subfamily a, 8E 
LOC653073             0.030   PREDICTED: Golgin subfamily A member 8-like protein...
ENAH                  0.030   enabled homolog isoform a 
ENAH                  0.030   enabled homolog isoform b 
MYH14                 0.030   myosin, heavy chain 14 isoform 1 
MYH14                 0.030   myosin, heavy chain 14 isoform 2 
MYH14                 0.030   myosin, heavy chain 14 isoform 3 
LOC728047             0.030   PREDICTED: similar to Golgin subfamily A member 8-l...
NUMA1                 0.029   nuclear mitotic apparatus protein 1 
PLEC1                 0.029   plectin 1 isoform 11 
PLEC1                 0.029   plectin 1 isoform 10 
PLEC1                 0.029   plectin 1 isoform 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press