Guide to the Human Genome
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Name: LTBP4 Sequence: fasta or formatted (1557aa) NCBI GI: 110347437
Description:

latent transforming growth factor beta binding protein 4 isoform c

Referenced in:

Extracellular Matrix
TGF-beta Family

Other entries for this name:
alt prot [1587aa] latent transforming growth factor beta binding protein 4 isoform b
alt prot [1624aa] latent transforming growth factor beta binding protein 4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6        119           3
 C cysteine           10.0        156           3
 D aspartate           5.7         88           2
 E glutamate           7.0        109           2
 F phenylalanine       3.0         46           1
 G glycine            11.4        178           3
 H histidine           2.2         34           2
 I isoleucine          1.3         20           1
 K lysine              0.4          7           1
 L leucine             5.7         88           2
 M methionine          0.6         10           1
 N asparagine          2.6         41           1
 P proline            11.9        185           5
 Q glutamine           3.4         53           2
 R arginine            7.9        123           2
 S serine              6.6        103           2
 T threonine           4.0         62           1
 V valine              5.2         81           3
 W tryptophan          0.6         10           1
 Y tyrosine            2.8         44           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   latent transforming growth factor beta binding prot... 
LTBP4                 0.950   latent transforming growth factor beta binding prot...
LTBP4                 0.950   latent transforming growth factor beta binding prot...
LTBP2                 0.317   latent transforming growth factor beta binding protei...
LTBP1                 0.261   latent transforming growth factor beta binding prote...
LTBP1                 0.261   latent transforming growth factor beta binding prote...
LTBP3                 0.167   latent transforming growth factor beta binding prot...
FBN3                  0.162   fibrillin 3 precursor 
LTBP3                 0.160   latent transforming growth factor beta binding prote...
FBN1                  0.150   fibrillin 1 precursor 
FBN2                  0.146   fibrillin 2 precursor 
NOTCH3                0.085   Notch homolog 3 
FBLN2                 0.075   fibulin 2 isoform a precursor 
NOTCH1                0.074   notch1 preproprotein 
NOTCH2                0.071   notch 2 preproprotein 
FBLN2                 0.070   fibulin 2 isoform b precursor 
NOTCH4                0.070   notch4 preproprotein 
HMCN1                 0.064   hemicentin 1 
FBLN1                 0.062   fibulin 1 isoform B precursor 
FBLN1                 0.062   fibulin 1 isoform A precursor 
FBLN1                 0.062   fibulin 1 isoform D 
FBLN1                 0.062   fibulin 1 isoform C precursor 
MEGF6                 0.061   EGF-like-domain, multiple 3 
JAG2                  0.058   jagged 2 isoform b precursor 
JAG2                  0.057   jagged 2 isoform a precursor 
HMCN2                 0.055   PREDICTED: hemicentin 2 
HMCN2                 0.055   PREDICTED: hemicentin 2 
HMCN2                 0.055   PREDICTED: hemicentin 2 
SNED1                 0.054   6720455I24Rik homolog 
JAG1                  0.052   jagged 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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