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Search of human proteins with 28466975
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28466975 keratin associated protein 8-1 [Homo sapiens]
(63 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28466975 keratin associated protein 8-1 [Homo sapiens] 150 2e-37
gi|239744833 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-06
gi|31791014 keratin associated protein 20-2 [Homo sapiens] 43 6e-05
gi|169206147 PREDICTED: hypothetical protein [Homo sapiens] 42 8e-05
gi|239750526 PREDICTED: hypothetical protein [Homo sapiens] 42 8e-05
gi|169205935 PREDICTED: hypothetical protein [Homo sapiens] 42 8e-05
gi|31791010 keratin associated protein 21-1 [Homo sapiens] 42 8e-05
gi|31791020 keratin associated protein 20-1 [Homo sapiens] 41 2e-04
gi|31791026 keratin associated protein 19-3 [Homo sapiens] 40 3e-04
gi|31791016 keratin associated protein 21-2 [Homo sapiens] 40 4e-04
gi|31791028 keratin associated protein 19-4 [Homo sapiens] 40 4e-04
gi|31791030 keratin associated protein 19-1 [Homo sapiens] 40 5e-04
gi|4505487 occludin [Homo sapiens] 39 9e-04
gi|149944573 keratin associated protein 19-8 [Homo sapiens] 38 0.002
gi|31791022 keratin associated protein 19-5 [Homo sapiens] 38 0.002
gi|31791038 keratin associated protein 6-1 [Homo sapiens] 38 0.002
gi|31791018 keratin associated protein 19-7 [Homo sapiens] 36 0.006
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 34 0.029
gi|153945796 keratin associated protein 6-3 [Homo sapiens] 34 0.029
gi|31791040 keratin associated protein 6-2 [Homo sapiens] 34 0.029
gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapi... 33 0.064
gi|109148552 keratin 3 [Homo sapiens] 33 0.064
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 33 0.064
gi|109452587 family with sequence similarity 98, member B isofor... 33 0.064
gi|31791024 keratin associated protein 19-6 [Homo sapiens] 33 0.064
gi|153791670 keratin 76 [Homo sapiens] 31 0.24
gi|15431310 keratin 14 [Homo sapiens] 31 0.24
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 31 0.24
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 31 0.24
gi|31791032 keratin associated protein 19-2 [Homo sapiens] 30 0.32
>gi|28466975 keratin associated protein 8-1 [Homo sapiens]
Length = 63
Score = 150 bits (380), Expect = 2e-37
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MLCDNFPGAVFPGCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFGYRRYSPF 60
MLCDNFPGAVFPGCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFGYRRYSPF
Sbjct: 1 MLCDNFPGAVFPGCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFGYRRYSPF 60
Query: 61 ALY 63
ALY
Sbjct: 61 ALY 63
>gi|239744833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 47.0 bits (110), Expect = 3e-06
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 13 GCYWGS-YGYPLGYSVGCGYGSTYSPVGYGFGYGYN-GCG 50
GC +GS YGY G S GCGYG+ YS GYG GYG GCG
Sbjct: 17 GCGYGSGYGYGYGSSYGCGYGTGYS-CGYGCGYGSGYGCG 55
Score = 41.6 bits (96), Expect = 1e-04
Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 7/44 (15%)
Query: 13 GCYWGS-YGYPLGYSVGCGYGSTYSPVGYGFGY--GY---NGCG 50
GC +GS YG G S GCGYG+ YS GYG GY GY +GCG
Sbjct: 45 GCGYGSGYGCGYGSSYGCGYGTGYS-CGYGSGYSCGYGSGSGCG 87
Score = 40.0 bits (92), Expect = 4e-04
Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 13 GCYWG---SYGYPLGYSVG------CGYGSTYS---PVGYGFGYGYNGCGA-FGYRRYSP 59
GC +G S GY GYS G CGYG+ + GYG GYG GCG+ GY Y P
Sbjct: 61 GCGYGTGYSCGYGSGYSCGYGSGSGCGYGTGFGCGYGCGYGTGYGC-GCGSGSGYCGYRP 119
Query: 60 F 60
F
Sbjct: 120 F 120
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 9/39 (23%)
Query: 13 GCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYN-GCG 50
GC +G+ GY GY GCGYGS GYG GYG + GCG
Sbjct: 33 GCGYGT-GYSCGY--GCGYGS-----GYGCGYGSSYGCG 63
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 2 LCDNFPGAVFPGCYWGS-YGYPLGYSVGCGYGSTYSPVGYGFGY--GYNGCG 50
+C N+ G C +GS YG G G GYGS+Y GYG GY GY GCG
Sbjct: 1 MCCNYYGN---SCGYGSSYGCGYGSGYGYGYGSSYG-CGYGTGYSCGY-GCG 47
>gi|31791014 keratin associated protein 20-2 [Homo sapiens]
Length = 65
Score = 42.7 bits (99), Expect = 6e-05
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 15 YWGS--YGYPL---GYSVGCGYGSTYSPVGYGFGYGYNGCGAFGYRRYSPFALY 63
Y+G YGY + GY GCGYG Y +G G+G GY G G +G R S + Y
Sbjct: 7 YYGGLRYGYGVLGGGYGCGCGYGHGYGGLGCGYGRGYGGYG-YGCCRPSCYGRY 59
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 14 CYWGSY--GYPLGYSV-GCGYGSTYSPVGYGFGYGYNGCG-AFGYRRY 57
CY+ +Y G GY V G GYG GYG GYG GCG GY Y
Sbjct: 2 CYYSNYYGGLRYGYGVLGGGYGCG---CGYGHGYGGLGCGYGRGYGGY 46
>gi|169206147 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 42.4 bits (98), Expect = 8e-05
Identities = 29/68 (42%), Positives = 32/68 (47%), Gaps = 20/68 (29%)
Query: 13 GCYWGS-YGYPLGYSVGCGYGSTYS-----------PVGYGFGYGYN-------GCGA-F 52
GC +GS YG G S GCGYG+ YS GYG GYG GCG+
Sbjct: 17 GCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGS 76
Query: 53 GYRRYSPF 60
GY Y PF
Sbjct: 77 GYCGYRPF 84
Score = 41.2 bits (95), Expect = 2e-04
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 1 MLCDNFPGAVFPGCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGY--GY---NGCG 50
M C+ + + GC +G GY GY GCGYGS+Y GYG GY GY +GCG
Sbjct: 1 MCCNYYGNSCGYGCSYGC-GYGSGY--GCGYGSSYG-CGYGTGYSCGYGSGSGCG 51
>gi|239750526 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 42.4 bits (98), Expect = 8e-05
Identities = 29/68 (42%), Positives = 32/68 (47%), Gaps = 20/68 (29%)
Query: 13 GCYWGS-YGYPLGYSVGCGYGSTYS-----------PVGYGFGYGYN-------GCGA-F 52
GC +GS YG G S GCGYG+ YS GYG GYG GCG+
Sbjct: 17 GCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGS 76
Query: 53 GYRRYSPF 60
GY Y PF
Sbjct: 77 GYCGYRPF 84
Score = 41.2 bits (95), Expect = 2e-04
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 1 MLCDNFPGAVFPGCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGY--GY---NGCG 50
M C+ + + GC +G GY GY GCGYGS+Y GYG GY GY +GCG
Sbjct: 1 MCCNYYGNSCGYGCSYGC-GYGSGY--GCGYGSSYG-CGYGTGYSCGYGSGSGCG 51
>gi|169205935 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 42.4 bits (98), Expect = 8e-05
Identities = 29/68 (42%), Positives = 32/68 (47%), Gaps = 20/68 (29%)
Query: 13 GCYWGS-YGYPLGYSVGCGYGSTYS-----------PVGYGFGYGYN-------GCGA-F 52
GC +GS YG G S GCGYG+ YS GYG GYG GCG+
Sbjct: 47 GCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGS 106
Query: 53 GYRRYSPF 60
GY Y PF
Sbjct: 107 GYCGYRPF 114
Score = 39.7 bits (91), Expect = 5e-04
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Query: 3 CDNFPGAVFPGCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGY--GY---NGCG 50
C+ + + GC +G GY GY GCGYGS+Y GYG GY GY +GCG
Sbjct: 33 CNYYGNSCGYGCSYGC-GYGSGY--GCGYGSSYG-CGYGTGYSCGYGSGSGCG 81
>gi|31791010 keratin associated protein 21-1 [Homo sapiens]
Length = 79
Score = 42.4 bits (98), Expect = 8e-05
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 13 GCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFGYRRYSPF 60
GC +G+ GY GY GCG+GS Y GYG GYG GY Y PF
Sbjct: 27 GCGYGT-GYGCGY--GCGFGSHYG-CGYGTGYGCGYGSGSGYCGYRPF 70
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 13 GCYWGS-YGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFGYRR 56
GC +GS YG G GCGYGS G GY G F +RR
Sbjct: 39 GCGFGSHYGCGYGTGYGCGYGS---------GSGYCGYRPFCFRR 74
>gi|31791020 keratin associated protein 20-1 [Homo sapiens]
Length = 56
Score = 40.8 bits (94), Expect = 2e-04
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 15 YWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFGYRRYSP 59
Y+G YGY +GCGYG Y G+G GY G G +G Y P
Sbjct: 7 YYGGYGYG---GLGCGYGCGYR----GYGCGYGGYGGYGNGYYCP 44
>gi|31791026 keratin associated protein 19-3 [Homo sapiens]
Length = 81
Score = 40.4 bits (93), Expect = 3e-04
Identities = 27/65 (41%), Positives = 30/65 (46%), Gaps = 18/65 (27%)
Query: 13 GCYWGSYGY------PLGYSVGCGYGS--------TYSPVGYGF---GYGY-NGCGAFGY 54
G Y+G GY LGY GCG GS Y GYG GYGY +G G +GY
Sbjct: 5 GSYYGGLGYGCGGFGGLGYGYGCGCGSFRRLGSGCGYGGYGYGSGFGGYGYGSGFGGYGY 64
Query: 55 RRYSP 59
Y P
Sbjct: 65 GCYRP 69
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 31 YGSTYSPVGY------GFGYGYNGCGAFGYRR 56
YGS Y +GY G GYGY GCG +RR
Sbjct: 4 YGSYYGGLGYGCGGFGGLGYGY-GCGCGSFRR 34
>gi|31791016 keratin associated protein 21-2 [Homo sapiens]
Length = 83
Score = 40.0 bits (92), Expect = 4e-04
Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 13 GCYWGS-YGYPLGYSVGCGYGSTY-SPVGYGFGYGYNGCG 50
GC +GS Y GY GCGYG Y S GYG GY + CG
Sbjct: 30 GCGYGSGCRYGSGYGTGCGYGCGYGSGCGYGCGYSSSCCG 69
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 17 GSYGYPLGYSVGCGYGSTY-----SPVGYGFGYGYNGCG 50
G GY G+S GCGYG Y S YG GYG GCG
Sbjct: 11 GGCGYGSGWSSGCGYGCGYGCGYGSGCRYGSGYG-TGCG 48
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 13 GCYWGS-----YGYPLGYSVGCGYGSTYSPVGYGF 42
GC +GS GY GY GCGYG YS G+
Sbjct: 36 GCRYGSGYGTGCGYGCGYGSGCGYGCGYSSSCCGY 70
>gi|31791028 keratin associated protein 19-4 [Homo sapiens]
Length = 84
Score = 40.0 bits (92), Expect = 4e-04
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 5 NFPGAVFPGCYWGSYGYP-LGYSVGCGYGSTYSPVGYGFGYGYNGCGAFGYRRYSPFALY 63
++ G+ + G +G G+ LGY GCG GS + +GYG G+G NG +GY R S + Y
Sbjct: 2 SYYGSYYRGLGYGCGGFGGLGYGYGCGCGS-FRRLGYGCGFGGNG---YGYCRPSCYGGY 57
>gi|31791030 keratin associated protein 19-1 [Homo sapiens]
Length = 90
Score = 39.7 bits (91), Expect = 5e-04
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 11/52 (21%)
Query: 13 GCYWGSYGYP------LGYSVGCGYGS---TYSPVGYGFGYGY-NGCGAFGY 54
G Y+G GY LGY GCG GS S GYG GYGY +G G++GY
Sbjct: 5 GSYYGGLGYSCGGFGGLGYGYGCGCGSFCRRGSGCGYG-GYGYGSGFGSYGY 55
Score = 38.9 bits (89), Expect = 9e-04
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 13 GCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCG 50
GC +G YGY G+ GYGS + GYG G+G G G
Sbjct: 38 GCGYGGYGYGSGFG-SYGYGSGFGGYGYGSGFGGYGYG 74
Score = 37.0 bits (84), Expect = 0.003
Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 3 CDNFPGAVFP-GCYWGSY---GYPLGYSVGCGYGSTYSPVGYGF---GYGY-NGCGAFGY 54
C F G + GC GS+ G GY G GYGS + GYG GYGY +G G +GY
Sbjct: 15 CGGFGGLGYGYGCGCGSFCRRGSGCGYG-GYGYGSGFGSYGYGSGFGGYGYGSGFGGYGY 73
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 13 GCYWGSYGYPLGYSVGCGYGSTYSPVGYGF-------GYGYNG 48
G +GSYGY G+ G GYGS + GYG GYG++G
Sbjct: 47 GSGFGSYGYGSGFG-GYGYGSGFGGYGYGCCRPSYNGGYGFSG 88
>gi|4505487 occludin [Homo sapiens]
Length = 522
Score = 38.9 bits (89), Expect = 9e-04
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 17 GSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAF 52
GS GYP G G G+GS S GYG+GYGY G G +
Sbjct: 100 GSVGYPYG---GSGFGSYGSGYGYGYGYGY-GYGGY 131
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 8 GAVFPGCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNG 48
G + G +GSYG GY GYG+GYGY G
Sbjct: 103 GYPYGGSGFGSYGSGYGY-------------GYGYGYGYGG 130
>gi|149944573 keratin associated protein 19-8 [Homo sapiens]
Length = 63
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 15 YWGSYGYPLG------YSVGCGYGSTYSPVGYGF---GYGYNGCGAFGYRRYSPFALY 63
Y+G GY G Y GCGYGS + +GYG GYG++ C Y Y A Y
Sbjct: 7 YYGGLGYGYGGFGGWGYGYGCGYGS-FRRLGYGCGYGGYGFSCCRPLYYGGYGFSAFY 63
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 31 YGSTYSPVGYGF------GYGYNGCGAFGYRR 56
Y S Y +GYG+ GYGY GCG +RR
Sbjct: 4 YRSYYGGLGYGYGGFGGWGYGY-GCGYGSFRR 34
>gi|31791022 keratin associated protein 19-5 [Homo sapiens]
Length = 72
Score = 37.7 bits (86), Expect = 0.002
Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 13 GCYWGSYGY------PLGYSVGCG--------YGSTYSPVGYGF---GYGYNGCGAFGYR 55
G Y+G GY LGY GCG YG Y GYG GYGY C Y
Sbjct: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYG 64
Query: 56 RYSPFALY 63
Y Y
Sbjct: 65 GYGFSGFY 72
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 31 YGSTYSPVGYGF------GYGYNGCGAFGYRR 56
YG+ Y +GYG+ GYGY GCG +RR
Sbjct: 4 YGNYYGGLGYGYGGFDDLGYGY-GCGCGSFRR 34
>gi|31791038 keratin associated protein 6-1 [Homo sapiens]
Length = 71
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 2 LCDNFPGAVF--PG---CYWGSYGYPLGYSVGCGYGST----YSPVGYGFGYGYNGCGAF 52
+C ++ G + PG C +G GY G +GCGYGS + +G G+GYG +
Sbjct: 1 MCGSYYGNYYGTPGYGFCGYGGLGYGYG-GLGCGYGSCCGCGFRRLGCGYGYGSRSLCGY 59
Query: 53 GY 54
GY
Sbjct: 60 GY 61
Score = 35.4 bits (80), Expect = 0.010
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 13 GCYWGSYGYPLGYSVGCGYGSTYSPVGYGFG---YGYNGCGAFGYRR 56
G Y+G+Y GY CGYG +GYG+G GY C G+RR
Sbjct: 3 GSYYGNYYGTPGYGF-CGYGG----LGYGYGGLGCGYGSCCGCGFRR 44
>gi|31791018 keratin associated protein 19-7 [Homo sapiens]
Length = 63
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 11 FPGCYWGSYGY------PLGYSVGCGYGSTYSPVGYGFGYG---YNGCGAFGYRRYSPFA 61
+ G Y+G GY LGY CG GS + +GYG GYG Y+ C Y Y
Sbjct: 3 YSGSYYGGLGYGCGGFGGLGYGYSCGCGS-FRRLGYGCGYGGYRYSCCHPSCYGGYWSSG 61
Query: 62 LY 63
Y
Sbjct: 62 FY 63
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 13 GCYWGS-YGYPLGYSVGCGYGSTYSPVGY---GFGYGYN 47
G YW YGY GY G G G YSP GY G GY Y+
Sbjct: 273 GNYWNQGYGYQQGYGPGYG-GYDYSPYGYYGYGPGYDYS 310
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 20 GYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFGYRRYSP 59
GY ++ G GY GYG GYG +GY Y P
Sbjct: 271 GYGNYWNQGYGYQQ-----GYGPGYGGYDYSPYGYYGYGP 305
>gi|153945796 keratin associated protein 6-3 [Homo sapiens]
Length = 110
Score = 33.9 bits (76), Expect = 0.029
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 21/68 (30%)
Query: 8 GAVFPGCYWGSYGYP---LGYS--------VGCGYGSTYS------PVGYGFGYGY---N 47
G + GC +G GY GY +GCGYGS GYG GYGY +
Sbjct: 31 GCGYGGCGYGCCGYGGLGFGYGGLDCGYGGLGCGYGSFCGCGYRGLDCGYGCGYGYVSHS 90
Query: 48 GCGAFGYR 55
CG GYR
Sbjct: 91 FCGC-GYR 97
Score = 30.0 bits (66), Expect = 0.42
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 13 GCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFGY 54
G Y+ +Y GY CGYG G G GYG G G GY
Sbjct: 10 GSYYRNYNGGHGYGC-CGYG------GLGCGYGGCGYGCCGY 44
>gi|31791040 keratin associated protein 6-2 [Homo sapiens]
Length = 62
Score = 33.9 bits (76), Expect = 0.029
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 15/50 (30%)
Query: 13 GCYWGSYGYP------LGYSVG---CGYGSTYSPVGYGFGYG---YNGCG 50
G Y+G +GY LGY G CGY S GYG GYG + GCG
Sbjct: 7 GNYYGDHGYGCCGYEGLGYGYGSLRCGYSSC---CGYGHGYGSRFFCGCG 53
>gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
Length = 1270
Score = 32.7 bits (73), Expect = 0.064
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 25 YSVGCGY---GSTYSPVGYGFGYGYNGCGAFGY 54
Y G GY GS+YS GYG GY G G+ GY
Sbjct: 1167 YDNGSGYRRGGSSYSGGGYGGGYSSGGYGSGGY 1199
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 4 DNFPGAVFPGCYWGSYGYPLGYSVGCGYG---------STYSPVGYGFGYGYNGCGAFGY 54
DN G G + GY GYS G GYG S + G G G GY G G+
Sbjct: 1168 DNGSGYRRGGSSYSGGGYGGGYSSG-GYGSGGYGGSANSFRAGYGAGVGGGYRGVSRGGF 1226
Query: 55 R 55
R
Sbjct: 1227 R 1227
>gi|109148552 keratin 3 [Homo sapiens]
Length = 628
Score = 32.7 bits (73), Expect = 0.064
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 11 FPGCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFG 53
F G Y G +G G G G+G G G G G+ G G FG
Sbjct: 89 FAGGYGGGFGSGYGGGFGGGFGG-----GRGMGGGFGGAGGFG 126
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 13 GCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFG 53
G Y G YG +G +G G+ + G G G+G G G G
Sbjct: 536 GGYGGGYGGGMGGGLGGGFS---AGGGSGSGFGRGGGGGIG 573
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 32.7 bits (73), Expect = 0.064
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 16 WGSYGYPLGYSVGCG---YGS----TYSPVGYGFGY----GYNGCGAFGYRRYS 58
+G++G YS G G YGS P GYG+GY YNG GY RYS
Sbjct: 94 FGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYGYGYGRSRDYNGRNQGGYDRYS 147
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 32.7 bits (73), Expect = 0.064
Identities = 21/41 (51%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 17 GSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFGYRRY 57
G YG GY G GYG Y G G G G G G GYRRY
Sbjct: 397 GGYGGRGGYG-GRGYGDPY---GGGGGGGGGGGGGGGYRRY 433
>gi|31791024 keratin associated protein 19-6 [Homo sapiens]
Length = 58
Score = 32.7 bits (73), Expect = 0.064
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 12/49 (24%)
Query: 15 YWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFGYRRYSPFALY 63
Y+GSY LGY GCG G+G G GY GCG GYR S + Y
Sbjct: 3 YYGSYYRGLGY--GCG--------GFG-GLGY-GCGCGGYRYGSGYGGY 39
>gi|153791670 keratin 76 [Homo sapiens]
Length = 638
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 17 GSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFG 53
G YG G S G G+G G G G G+ G G FG
Sbjct: 92 GGYGGGFGGSYGGGFGG-----GRGVGSGFGGAGGFG 123
Score = 30.0 bits (66), Expect = 0.42
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 11 FPGCYWGSYG--YPLGYSVGCGYGSTYSPVGYGFGYGYNGCGAFG 53
F G Y G +G Y G+ G G GS G+G G+ G G FG
Sbjct: 90 FAGGYGGGFGGSYGGGFGGGRGVGS-----GFGGAGGFGGAGGFG 129
>gi|15431310 keratin 14 [Homo sapiens]
Length = 472
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 17 GSYGYPLGYSVGCGYGSTYSPVGYGFGYGYNG 48
G+YG GY G G+ S+ S G GFG GY G
Sbjct: 61 GAYGLGGGY--GGGFSSSSSSFGSGFGGGYGG 90
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 4 DNFPGAVFPGCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYN--GCGAFGYRRYSPFA 61
+ + G G + GS GY G G G Y G G+G GY+ G G +G Y+ F
Sbjct: 245 NGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG 304
Query: 62 LY 63
Y
Sbjct: 305 NY 306
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 5/21 (23%)
Query: 30 GYGSTYSPVGYGFGYGYNGCG 50
GYGS G GFG GYNG G
Sbjct: 233 GYGS-----GRGFGDGYNGYG 248
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 4 DNFPGAVFPGCYWGSYGYPLGYSVGCGYGSTYSPVGYGFGYGYN--GCGAFGYRRYSPFA 61
+ + G G + GS GY G G G Y G G+G GY+ G G +G Y+ F
Sbjct: 233 NGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG 292
Query: 62 LY 63
Y
Sbjct: 293 NY 294
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 5/21 (23%)
Query: 30 GYGSTYSPVGYGFGYGYNGCG 50
GYGS G GFG GYNG G
Sbjct: 221 GYGS-----GRGFGDGYNGYG 236
>gi|31791032 keratin associated protein 19-2 [Homo sapiens]
Length = 52
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 13/45 (28%)
Query: 25 YSVGCGYGSTYSPVGYGFGY-------GYNGCG-----AFGYRRY 57
Y GCG GS + +GYG GY G+ GCG YRRY
Sbjct: 3 YGYGCGCGS-FCRLGYGCGYEGCRYGCGHRGCGDGCCCPSCYRRY 46
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.154 0.569
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,261,405
Number of Sequences: 37866
Number of extensions: 143283
Number of successful extensions: 618
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 172
length of query: 63
length of database: 18,247,518
effective HSP length: 36
effective length of query: 27
effective length of database: 16,884,342
effective search space: 455877234
effective search space used: 455877234
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.