Guide to the Human Genome
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Name: HNRNPAB Sequence: fasta or formatted (332aa) NCBI GI: 55956919
Description:

heterogeneous nuclear ribonucleoprotein A/B isoform a

Referenced in:

hnRNP
RNA Editing and Other RNA Modifications

Other entries for this name:
alt prot [285aa] heterogeneous nuclear ribonucleoprotein A/B isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         22           3
 C cysteine            0.6          2           1
 D aspartate           4.5         15           1
 E glutamate           8.4         28           3
 F phenylalanine       3.9         13           1
 G glycine            17.5         58           8
 H histidine           1.2          4           1
 I isoleucine          3.0         10           1
 K lysine              8.7         29           2
 L leucine             2.7          9           1
 M methionine          2.1          7           1
 N asparagine          5.1         17           2
 P proline             5.1         17           2
 Q glutamine           5.4         18           4
 R arginine            3.9         13           2
 S serine              5.4         18           1
 T threonine           3.9         13           2
 V valine              4.5         15           2
 W tryptophan          0.9          3           1
 Y tyrosine            6.3         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heterogeneous nuclear ribonucleoprotein A/B isoform ... 
HNRNPAB               0.772   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPD                0.580   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.562   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRPDL                0.528   heterogeneous nuclear ribonucleoprotein D-like [Homo...
HNRNPD                0.453   heterogeneous nuclear ribonucleoprotein D isoform d ...
HNRNPD                0.435   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPA3               0.270   heterogeneous nuclear ribonucleoprotein A3 
HNRNPA2B1             0.264   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.264   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
HNRNPA1               0.258   heterogeneous nuclear ribonucleoprotein A1 isoform b...
MSI2                  0.251   musashi 2 isoform a 
HNRNPA1L2             0.248   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.248   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1               0.248   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
MSI2                  0.226   musashi 2 isoform b 
MSI1                  0.224   musashi 1 
HNRNPA0               0.217   heterogeneous nuclear ribonucleoprotein A0 
LOC120364             0.214   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.214   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.212   PREDICTED: similar to heterogeneous nuclear ribonuc...
DAZAP1                0.203   DAZ associated protein 1 isoform a 
DAZAP1                0.203   DAZ associated protein 1 isoform b 
TARDBP                0.144   TAR DNA binding protein 
NCL                   0.088   nucleolin 
RBM39                 0.086   RNA binding motif protein 39 isoform b 
RBM39                 0.086   RNA binding motif protein 39 isoform a 
HNRNPR                0.082   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.082   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
RBM19                 0.077   RNA binding motif protein 19 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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