Guide to the Human Genome
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Name: RBM3 Sequence: fasta or formatted (157aa) NCBI GI: 5803137
Description:

RNA binding motif protein 3

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          7           1
 C cysteine            0.0          0           0
 D aspartate           7.0         11           1
 E glutamate           5.1          8           2
 F phenylalanine       5.1          8           1
 G glycine            20.4         32           3
 H histidine           2.5          4           1
 I isoleucine          1.9          3           1
 K lysine              1.9          3           1
 L leucine             2.5          4           1
 M methionine          1.9          3           1
 N asparagine          5.7          9           1
 P proline             1.9          3           1
 Q glutamine           3.2          5           1
 R arginine           11.5         18           1
 S serine              9.6         15           2
 T threonine           3.2          5           1
 V valine              4.5          7           4
 W tryptophan          0.0          0           0
 Y tyrosine            7.6         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 3 
CIRBP                 0.544   cold inducible RNA binding protein 
RBMXL2                0.287   testes-specific heterogenous nuclear ribonucleoprot...
RBMXL1                0.261   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.261   RNA binding motif protein, X-linked-like 1 
RBMX                  0.254   RNA binding motif protein, X-linked 
LOC100288788          0.221   PREDICTED: similar to RNA binding motif protein, X-...
LOC100288788          0.221   PREDICTED: hypothetical protein XP_002343863 
HNRNPA2B1             0.218   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.218   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
RBMXL3                0.215   RNA binding motif protein, X-linked-like 3 
HNRNPA3               0.208   heterogeneous nuclear ribonucleoprotein A3 
TRA2B                 0.205   splicing factor, arginine/serine-rich 10 
TRA2A                 0.205   transformer-2 alpha 
HNRNPA0               0.202   heterogeneous nuclear ribonucleoprotein A0 
RBMY1A1               0.202   RNA binding motif protein, Y-linked, family 1, member...
RBMY1E                0.202   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1B                0.202   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1D                0.202   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1F                0.202   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1J                0.202   RNA binding motif protein, Y-linked, family 1, membe...
HNRNPA1               0.192   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
HNRNPA1L2             0.192   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.192   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRPDL                0.189   heterogeneous nuclear ribonucleoprotein D-like [Homo...
HNRNPA1               0.179   heterogeneous nuclear ribonucleoprotein A1 isoform b...
NCL                   0.169   nucleolin 
HNRNPD                0.163   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.163   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPAB               0.160   heterogeneous nuclear ribonucleoprotein A/B isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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