Guide to the Human Genome
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Name: KRTAP8-1 Sequence: fasta or formatted (63aa) NCBI GI: 28466975
Description:

keratin associated protein 8-1

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8          3           1
 C cysteine            6.3          4           1
 D aspartate           1.6          1           1
 E glutamate           0.0          0           0
 F phenylalanine       7.9          5           1
 G glycine            23.8         15           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             4.8          3           1
 M methionine          1.6          1           1
 N asparagine          3.2          2           1
 P proline             7.9          5           1
 Q glutamine           0.0          0           0
 R arginine            3.2          2           2
 S serine              7.9          5           1
 T threonine           1.6          1           1
 V valine              4.8          3           1
 W tryptophan          1.6          1           1
 Y tyrosine           19.0         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 8-1 
LOC647262             0.176   PREDICTED: hypothetical protein 
KRTAP20-2             0.144   keratin associated protein 20-2 
LOC731932             0.136   PREDICTED: hypothetical protein 
LOC731932             0.136   PREDICTED: hypothetical protein 
LOC731932             0.136   PREDICTED: hypothetical protein 
KRTAP21-1             0.136   keratin associated protein 21-1 
KRTAP20-1             0.128   keratin associated protein 20-1 
KRTAP19-3             0.120   keratin associated protein 19-3 
KRTAP21-2             0.120   keratin associated protein 21-2 
KRTAP19-4             0.120   keratin associated protein 19-4 
KRTAP19-1             0.120   keratin associated protein 19-1 
OCLN                  0.112   occludin 
KRTAP19-8             0.104   keratin associated protein 19-8 
KRTAP19-5             0.104   keratin associated protein 19-5 
KRTAP6-1              0.104   keratin associated protein 6-1 
KRTAP19-7             0.088   keratin associated protein 19-7 
HNRNPAB               0.072   heterogeneous nuclear ribonucleoprotein A/B isoform ...
KRTAP6-3              0.072   keratin associated protein 6-3 
KRTAP6-2              0.072   keratin associated protein 6-2 
DHX9                  0.064   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
KRT3                  0.064   keratin 3 
RBM3                  0.064   RNA binding motif protein 3 
FAM98B                0.064   family with sequence similarity 98, member B isofor...
KRTAP19-6             0.064   keratin associated protein 19-6 
KRT76                 0.048   keratin 76 
KRT14                 0.048   keratin 14 
HNRNPA2B1             0.048   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.048   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
KRTAP19-2             0.040   keratin associated protein 19-2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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