Guide to the Human Genome
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Name: KRTAP6-3 Sequence: fasta or formatted (110aa) NCBI GI: 153945796
Description:

keratin associated protein 6-3

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine           14.5         16           2
 D aspartate           1.8          2           1
 E glutamate           0.0          0           0
 F phenylalanine       3.6          4           1
 G glycine            36.4         40           2
 H histidine           1.8          2           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             4.5          5           1
 M methionine          1.8          2           1
 N asparagine          2.7          3           1
 P proline             0.0          0           0
 Q glutamine           0.0          0           0
 R arginine            2.7          3           1
 S serine              7.3          8           2
 T threonine           3.6          4           2
 V valine              0.9          1           1
 W tryptophan          0.0          0           0
 Y tyrosine           18.2         20           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 6-3 
KRTAP6-1              0.336   keratin associated protein 6-1 
LOC647262             0.312   PREDICTED: hypothetical protein 
LOC731932             0.271   PREDICTED: hypothetical protein 
LOC731932             0.271   PREDICTED: hypothetical protein 
LOC731932             0.259   PREDICTED: hypothetical protein 
KRTAP6-2              0.251   keratin associated protein 6-2 
KRTAP21-2             0.211   keratin associated protein 21-2 
KRTAP19-1             0.211   keratin associated protein 19-1 
KRTAP19-3             0.198   keratin associated protein 19-3 
KRTAP21-1             0.182   keratin associated protein 21-1 
KRTAP19-5             0.158   keratin associated protein 19-5 
KRTAP19-4             0.154   keratin associated protein 19-4 
HNRNPA1               0.150   heterogeneous nuclear ribonucleoprotein A1 isoform b...
KRTAP19-7             0.146   keratin associated protein 19-7 
KRT1                  0.142   keratin 1 
TAF15                 0.142   TBP-associated factor 15 isoform 2 
TAF15                 0.142   TBP-associated factor 15 isoform 1 
KRTAP20-2             0.142   keratin associated protein 20-2 
KRTAP20-1             0.142   keratin associated protein 20-1 
KRTAP19-8             0.138   keratin associated protein 19-8 
KRTAP5-5              0.138   keratin associated protein 5-5 
KRTAP17-1             0.134   keratin associated protein 17-1 
KRTAP5-4              0.126   keratin associated protein 5-4 
KRTAP5-10             0.121   keratin associated protein 5-10 
LOR                   0.117   loricrin 
KRT9                  0.117   keratin 9 
KRT3                  0.117   keratin 3 
KRTAP5-1              0.117   keratin associated protein 5-1 
KRT10                 0.109   keratin 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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