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Search of human proteins with 121674801
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens]
(416 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens] 822 0.0
gi|37700249 HEPACAM family member 2 isoform 2 [Homo sapiens] 108 9e-24
gi|86439957 HEPACAM family member 2 isoform 1 [Homo sapiens] 107 2e-23
gi|52317156 carcinoembryonic antigen-related cell adhesion molec... 78 2e-14
gi|148612793 carcinoembryonic antigen-related cell adhesion mole... 75 1e-13
gi|156071472 CD2 molecule [Homo sapiens] 74 2e-13
gi|21361429 V-set and immunoglobulin domain containing 2 [Homo s... 69 6e-12
gi|4502687 CD84 molecule [Homo sapiens] 68 1e-11
gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens] 67 3e-11
gi|32699028 V-set and immunoglobulin domain containing 1 [Homo s... 67 4e-11
gi|67188443 CD276 antigen isoform a [Homo sapiens] 65 1e-10
gi|54607118 leucine-rich repeats and immunoglobulin-like domains... 64 2e-10
gi|40255013 carcinoembryonic antigen-related cell adhesion molec... 63 4e-10
gi|85861202 carcinoembryonic antigen-related cell adhesion molec... 63 4e-10
gi|194328710 pregnancy specific beta-1-glycoprotein 8 isoform b ... 63 6e-10
gi|51510887 pregnancy specific beta-1-glycoprotein 8 isoform a [... 63 6e-10
gi|13376852 CD276 antigen isoform b [Homo sapiens] 62 7e-10
gi|8393638 F11 receptor precursor [Homo sapiens] 62 1e-09
gi|21361392 pregnancy specific beta-1-glycoprotein 1 [Homo sapiens] 62 1e-09
gi|19923195 carcinoembryonic antigen-related cell adhesion molec... 62 1e-09
gi|42560235 pregnancy specific beta-1-glycoprotein 4 isoform 1 [... 62 1e-09
gi|68161541 carcinoembryonic antigen-related cell adhesion molec... 61 2e-09
gi|4506175 pregnancy specific beta-1-glycoprotein 6 isoform a [H... 61 2e-09
gi|73661174 pregnancy specific beta-1-glycoprotein 6 isoform b [... 61 2e-09
gi|47419900 pregnancy specific beta-1-glycoprotein 4 isoform 2 [... 61 2e-09
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 61 2e-09
gi|5901930 carcinoembryonic antigen-related cell adhesion molecu... 61 2e-09
gi|21314600 carcinoembryonic antigen-related cell adhesion molec... 60 4e-09
gi|94420689 neural cell adhesion molecule 1 isoform 1 [Homo sapi... 60 5e-09
gi|115529482 neural cell adhesion molecule 1 isoform 2 [Homo sap... 60 5e-09
>gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens]
Length = 416
Score = 822 bits (2122), Expect = 0.0
Identities = 416/416 (100%), Positives = 416/416 (100%)
Query: 1 MKRERGALSRASRALRLAPFVYLLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQYSST 60
MKRERGALSRASRALRLAPFVYLLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQYSST
Sbjct: 1 MKRERGALSRASRALRLAPFVYLLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQYSST 60
Query: 61 SSDRPVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTY 120
SSDRPVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTY
Sbjct: 61 SSDRPVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTY 120
Query: 121 EVEISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTW 180
EVEISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTW
Sbjct: 121 EVEISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTW 180
Query: 181 LKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITVYRRSS 240
LKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITVYRRSS
Sbjct: 181 LKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITVYRRSS 240
Query: 241 LYIILSTGGIFLLVTLVTVCACWKPSKRKQKKLEKQNSLEYMDQNDDRLKPEADTLPRSG 300
LYIILSTGGIFLLVTLVTVCACWKPSKRKQKKLEKQNSLEYMDQNDDRLKPEADTLPRSG
Sbjct: 241 LYIILSTGGIFLLVTLVTVCACWKPSKRKQKKLEKQNSLEYMDQNDDRLKPEADTLPRSG 300
Query: 301 EQERKNPMALYILKDKDSPETEENPAPEPRSATEPGPPGYSVSPAVPGRSPGLPIRSARR 360
EQERKNPMALYILKDKDSPETEENPAPEPRSATEPGPPGYSVSPAVPGRSPGLPIRSARR
Sbjct: 301 EQERKNPMALYILKDKDSPETEENPAPEPRSATEPGPPGYSVSPAVPGRSPGLPIRSARR 360
Query: 361 YPRSPARSPATGRTHSSPPRAPSSPGRSRSASRTLRTAGVHIIREQDEAGPVEISA 416
YPRSPARSPATGRTHSSPPRAPSSPGRSRSASRTLRTAGVHIIREQDEAGPVEISA
Sbjct: 361 YPRSPARSPATGRTHSSPPRAPSSPGRSRSASRTLRTAGVHIIREQDEAGPVEISA 416
>gi|37700249 HEPACAM family member 2 isoform 2 [Homo sapiens]
Length = 450
Score = 108 bits (270), Expect = 9e-24
Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 17 LAPFVYLLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQYS--STSSDRPVVKWQLKRD 74
L F L T G+ +T P +HG G++ L V Y + +SD ++ W +R
Sbjct: 3 LKVFTTFLSFATGACSGLKVTVPSHTVHGVRGQALYLPVHYGFHTPASDIQII-WLFERP 61
Query: 75 K--PVTVVQSIGTEVIGTLRPDYRDRIRLFE-NGSLLLSDLQLADEGTYEVEISITDD-T 130
P ++ S+ V+ L +Y+ + + N SLL++ LQ DEG Y V+++I + T
Sbjct: 62 HTMPKYLLGSVNKSVVPDL--EYQHKFTMMPPNASLLINPLQFPDEGNYIVKVNIQGNGT 119
Query: 131 FTGEKTINLTVDVPISRPQVLVASTT-VLELSEAFTLNCSHENGTKPSYTWLKDGKPLLN 189
+ + I +TVD P+++P V + + +E TL C E GT+ +Y WLK+G+P+
Sbjct: 120 LSASQKIQVTVDDPVTKPVVQIHPPSGAVEYVGNMTLTCHVEGGTRLAYQWLKNGRPVHT 179
Query: 190 DSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITVY 236
S SP L I V ED YSC+V NP+S+ S + +Y
Sbjct: 180 SSTYSFSPQNNTLHIAPVTKEDIGNYSCLVRNPVSEMESDIIMPIIY 226
>gi|86439957 HEPACAM family member 2 isoform 1 [Homo sapiens]
Length = 462
Score = 107 bits (268), Expect = 2e-23
Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 12/223 (5%)
Query: 21 VYLLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQYS--STSSDRPVVKWQLKRDK--P 76
+YLLL G+ +T P +HG G++ L V Y + +SD ++ W +R P
Sbjct: 21 IYLLLFGA--CSGLKVTVPSHTVHGVRGQALYLPVHYGFHTPASDIQII-WLFERPHTMP 77
Query: 77 VTVVQSIGTEVIGTLRPDYRDRIRLFE-NGSLLLSDLQLADEGTYEVEISITDD-TFTGE 134
++ S+ V+ L +Y+ + + N SLL++ LQ DEG Y V+++I + T +
Sbjct: 78 KYLLGSVNKSVVPDL--EYQHKFTMMPPNASLLINPLQFPDEGNYIVKVNIQGNGTLSAS 135
Query: 135 KTINLTVDVPISRPQVLVASTT-VLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRM 193
+ I +TVD P+++P V + + +E TL C E GT+ +Y WLK+G+P+ S
Sbjct: 136 QKIQVTVDDPVTKPVVQIHPPSGAVEYVGNMTLTCHVEGGTRLAYQWLKNGRPVHTSSTY 195
Query: 194 LLSPDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITVY 236
SP L I V ED YSC+V NP+S+ S + +Y
Sbjct: 196 SFSPQNNTLHIAPVTKEDIGNYSCLVRNPVSEMESDIIMPIIY 238
>gi|52317156 carcinoembryonic antigen-related cell adhesion molecule
isoform 2 [Homo sapiens]
Length = 292
Score = 77.8 bits (190), Expect = 2e-14
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 88 IGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISR 147
+ T P Y R + +G L ++ L D G Y ++++ + + + +L V +++
Sbjct: 88 VRTPGPAYSGRETISPSGDLHFQNVTLEDTGYYNLQVTYRNSQIE-QASHHLRVYESVAQ 146
Query: 148 PQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRV 207
P + +STTV E L C H N T S+ W+ + + L RM LS VLTI +
Sbjct: 147 PSIQASSTTVTEKGSV-VLTC-HTNNTGTSFQWIFNNQRLQVTKRMKLSWFNHVLTIDPI 204
Query: 208 LMEDDDLYSCMVENPISQGRSLPVKITVYRRSSLYIILSTGGIFLLVTLVTVCACW 263
ED Y C V NP+S RS P+K+TV ++L I++ G+ + LV C+
Sbjct: 205 RQEDAGEYQCEVSNPVSSNRSDPLKLTVKYDNTLGILI---GVLVGSLLVAALVCF 257
>gi|148612793 carcinoembryonic antigen-related cell adhesion
molecule isoform 1 [Homo sapiens]
Length = 293
Score = 74.7 bits (182), Expect = 1e-13
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Query: 88 IGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISR 147
+ T P Y R + +G L ++ L D G Y ++++ + + + +L V +++
Sbjct: 88 VRTPGPAYSGRETISPSGDLHFQNVTLEDTGYYNLQVTYRNSQIE-QASHHLRVYESVAQ 146
Query: 148 PQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRV 207
P + +STTV E L C H N T S+ W+ + + L RM LS VLTI +
Sbjct: 147 PSIQASSTTVTEKGSV-VLTC-HTNNTGTSFQWIFNNQRLQVTKRMKLSWFNHVLTIDPI 204
Query: 208 LMEDDDLYSCMVENPISQGRSLPVKITVYRRSSLYIILSTGGIFLLVTLVTVCACW 263
ED Y C V NP+S RS P+K+TV + IL G+ + LV C+
Sbjct: 205 RQEDAGEYQCEVSNPVSSNRSDPLKLTVKSDDNTLGILI--GVLVGSLLVAALVCF 258
>gi|156071472 CD2 molecule [Homo sapiens]
Length = 351
Score = 74.3 bits (181), Expect = 2e-13
Identities = 81/354 (22%), Positives = 133/354 (37%), Gaps = 43/354 (12%)
Query: 45 GTVGKSALLSVQYSSTSSDRPVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFEN 104
G +G+ L + S D +KW+ DK E +D +LF+N
Sbjct: 35 GALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKE-----KDTYKLFKN 89
Query: 105 GSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAF 164
G+L + L+ D+ Y+V I T EK +L + +S+P++ S T +
Sbjct: 90 GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKI---SWTCINT---- 142
Query: 165 TLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPIS 224
TL C NGT P +DGK L R++ L+ + C N +S
Sbjct: 143 TLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLSAK---------FKCTAGNKVS 193
Query: 225 QGRSLPVKITVYRRSSLYIILS-TGGIFLLVTLVTVCACWKPSKRKQKKLEKQNSLEYMD 283
+ S+ + +Y+I+ GG LL+ V + + ++KQ+
Sbjct: 194 KESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKKQRS----------R 243
Query: 284 QNDDRLKPEADTLPRSGEQERKNPMALYILKDKDSPETEENPAPEPRSATE-----PGPP 338
+ND+ L+ A R +ER +P T ++P P P ++ P PP
Sbjct: 244 RNDEELETRAH---RVATEERGRKPHQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPPP 300
Query: 339 GYSVSPAVPGRSPGLPIRSARRYPRSPARSPATGRTHSSPPRAPSSPGRSRSAS 392
G+ V R P + P P R PP + S S++
Sbjct: 301 GHRVQHQPQKRPPAPSGTQVHQQKGPPLPRP---RVQPKPPHGAAENSLSPSSN 351
>gi|21361429 V-set and immunoglobulin domain containing 2 [Homo
sapiens]
Length = 327
Score = 69.3 bits (168), Expect = 6e-12
Identities = 68/270 (25%), Positives = 120/270 (44%), Gaps = 15/270 (5%)
Query: 34 VNITSPVRLIHGTVGKSALLSVQYSSTSSDRPVVKWQ-LKRDKPVTVVQSIGTEVIGTLR 92
V + P + +GK+A L+ YS++ D ++W ++ KP++ I G L
Sbjct: 24 VEVKVPTEPLSTPLGKTAELTCTYSTSVGDSFALEWSFVQPGKPISESHPILYFTNGHLY 83
Query: 93 P--DYRDRIRLFEN------GSLLLSDLQLADEGTYEVEISITDDTFT-GEKTINLTVDV 143
P R+ L +N +L L+D+ +D GTY +++ D +T G INLTV V
Sbjct: 84 PTGSKSKRVSLLQNPPTVGVATLKLTDVHPSDTGTYLCQVNNPPDFYTNGLGLINLTVLV 143
Query: 144 PISRPQVLVASTTVLELSEAFTLNCSHENGT-KPSYTWLKDGK-PLLNDSRMLLSPDQKV 201
P S P L + + + + L CS G KP Y W++ G P + M+
Sbjct: 144 PPSNP--LCSQSGQTSVGGSTALRCSSSEGAPKPVYNWVRLGTFPTPSPGSMVQDEVSGQ 201
Query: 202 LTITRVLMEDDDLYSCMVENPISQGRSLPVKITVYRRSSLYIILSTGGIFLLVTLVTVCA 261
L +T + + Y C+ N + S + ++V S + + G+ L V L++V A
Sbjct: 202 LILTNLSLTSSGTYRCVATNQMGSA-SCELTLSVTEPSQGRVAGALIGVLLGVLLLSVAA 260
Query: 262 CWKPSKRKQKKLEKQNSLEYMDQNDDRLKP 291
+K++ + + + D +D + P
Sbjct: 261 FCLVRFQKERGKKPKETYGGSDLREDAIAP 290
>gi|4502687 CD84 molecule [Homo sapiens]
Length = 328
Score = 68.2 bits (165), Expect = 1e-11
Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 24/273 (8%)
Query: 20 FVYLLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQYSSTSSDRPVVKWQLKRDKP-VT 78
++ LL +QT P E S + ++G +G+S V + ++ W K VT
Sbjct: 7 WILLLCLQTWP-EAAGKDSEIFTVNGILGESVTFPVNIQEPRQVK-IIAWTSKTSVAYVT 64
Query: 79 VVQSIGTEVIGTLRPDYRDRIR-LFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTI 137
S V+ +Y +RI L N +L++SDL++ D G Y+ +I+ D +T K
Sbjct: 65 PGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRY 124
Query: 138 NLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTK-PSYTWLKDGKPLLNDSRMLLS 196
NL + + +P++ + + + TL CS E K +Y W L
Sbjct: 125 NLQIYRRLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNWSP------------LG 172
Query: 197 PDQKVLTITRVLMEDDDLYSCMVENPIS------QGRSLPVKITV-YRRSSLYIILSTGG 249
+ VL I + + + Y+C +NP+S R L I + +R ++
Sbjct: 173 EEGNVLQIFQTPEDQELTYTCTAQNPVSNNSDSISARQLCADIAMGFRTHHTGLLSVLAM 232
Query: 250 IFLLVTLVTVCACWKPSKRKQKKLEKQNSLEYM 282
FLLV +++ ++ KR+Q K+ Y+
Sbjct: 233 FFLLVLILSSVFLFRLFKRRQDAASKKTIYTYI 265
>gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens]
Length = 319
Score = 67.0 bits (162), Expect = 3e-11
Identities = 71/309 (22%), Positives = 136/309 (44%), Gaps = 35/309 (11%)
Query: 16 RLAPFVYLLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQY-SSTSSDRPVVKWQ---- 70
++ P ++ L ++ +++ +P ++ + GKS L Y +STSS +++W
Sbjct: 4 KMWPVLWTLCAVRVTVDAISVETPQDVLRASQGKSVTLPCTYHTSTSSREGLIQWDKLLL 63
Query: 71 LKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENG-----SLLLSDLQLADEGTYEVEIS 125
++ V S + G L Y++R+ + N S+ + L +AD GTYE +S
Sbjct: 64 THTERVVIWPFSNKNYIHGEL---YKNRVSISNNAEQSDASITIDQLTMADNGTYECSVS 120
Query: 126 ITDDTFTGEKT-INLTVDVPISRPQVLVASTTVLELSEAFTLNC-SHENGTKPSYTWLKD 183
+ D K+ + L V VP S+P+ + T+ + L C S E P Y+W +
Sbjct: 121 LMSDLEGNTKSRVRLLVLVPPSKPECGIEGETI--IGNNIQLTCQSKEGSPTPQYSWKRY 178
Query: 184 GKPLLNDSRMLLSP-DQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITVYRRS--- 239
+LN + L P + +++ + + Y C N +G ITV RS
Sbjct: 179 N--ILNQEQPLAQPASGQPVSLKNISTDTSGYYICTSSN--EEGTQF-CNITVAVRSPSM 233
Query: 240 --SLYIILSTGGIFLLV---TLVTVCACWKPSKRKQKKLEKQNSLEYMDQNDDRLKPEAD 294
+LY+ ++ G + L+ ++ C C + K + + + E ++ ++L+
Sbjct: 234 NVALYVGIAVGVVAALIIIGIIIYCCCCRGKDDNTEDKEDARPNREAYEEPPEQLR---- 289
Query: 295 TLPRSGEQE 303
L R E+E
Sbjct: 290 ELSREREEE 298
>gi|32699028 V-set and immunoglobulin domain containing 1 [Homo
sapiens]
Length = 387
Score = 66.6 bits (161), Expect = 4e-11
Identities = 75/322 (23%), Positives = 137/322 (42%), Gaps = 25/322 (7%)
Query: 34 VNITSPVRLIHGTVGKSALLSVQYSSTSSDRPV--VKWQL---KRDKPVTVVQSIGTEVI 88
V +T P ++ TVG + L Y++T + R ++W K +P+++ S G + +
Sbjct: 22 VQVTIPDGFVNVTVGSNVTLICIYTTTVASREQLSIQWSFFHKKEMEPISIYFSQGGQAV 81
Query: 89 GTLRPDYRDRIRLFE---NGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPI 145
++DRI N S+ +S +Q AD G Y +++ D F G+ L V V +
Sbjct: 82 AI--GQFKDRITGSNDPGNASITISHMQPADSGIYICDVNNPPD-FLGQNQGILNVSVLV 138
Query: 146 SRPQVLVASTTVLELSEAFTLNCSHENGT-KPSYTWLK-DGKPLLNDSRMLLSPDQKVLT 203
+ L + E +L+C GT P Y W K +G+ ++ + +P +L
Sbjct: 139 KPSKPLCSVQGRPETGHTISLSCLSALGTPSPVYYWHKLEGRDIV-PVKENFNPTTGILV 197
Query: 204 ITRVLMEDDDLYSCMVENPISQGRSLPVKITVYRRSSLYIILSTGGIFLLVTLVTVCACW 263
I + + Y C N + S + +T I+ + G + ++ C+
Sbjct: 198 IGNLTNFEQGYYQCTAINRLGNS-SCEIDLTSSHPEVGIIVGALIGSLVGAAIIISVVCF 256
Query: 264 KPSKRKQKKLEKQNS----LEYMDQNDDRLKPEADTLPRSGEQERKNPMALY------IL 313
+K K K E+ + LE M + + R + EA + + E P +++ I
Sbjct: 257 ARNKAKAKAKERNSKTIAELEPMTKINPRGESEAMPREDATQLEVTLPSSIHETGPDTIQ 316
Query: 314 KDKDSPETEENPAPEPRSATEP 335
+ P+ + PAPEP +EP
Sbjct: 317 EPDYEPKPTQEPAPEPAPGSEP 338
>gi|67188443 CD276 antigen isoform a [Homo sapiens]
Length = 534
Score = 64.7 bits (156), Expect = 1e-10
Identities = 73/297 (24%), Positives = 122/297 (41%), Gaps = 29/297 (9%)
Query: 27 QTDPLEGVNITSPVRLIHGTVGKSALLSVQYSST---SSDRPVVKWQLKRDKPVTVVQSI 83
Q P V + P + VG A L +S S + + WQL K + +
Sbjct: 240 QRSPTGAVEVQVPEDPVVALVGTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTE 299
Query: 84 GTEVIGTLRPDYRDRIRLFE------NGSLLLSDLQLADEGTYEVEISITDDTFTGEKTI 137
G + Y +R LF N SL L +++ADEG++ +SI D G +
Sbjct: 300 GRDQGSA----YANRTALFPDLLAQGNASLRLQRVRVADEGSFTCFVSIRD---FGSAAV 352
Query: 138 NLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGK--PLL-NDSRML 194
+L V P S+P + + L + T+ CS G + + +DG+ PL N +
Sbjct: 353 SLQVAAPYSKPSMTLEPNKDLRPGDTVTITCSSYRGYPEAEVFWQDGQGVPLTGNVTTSQ 412
Query: 195 LSPDQ---KVLTITRVLMEDDDLYSCMVENPI-SQGRSLPVKIT----VYRRSSLYIILS 246
++ +Q V ++ RV++ + YSC+V NP+ Q V IT + +L++ +
Sbjct: 413 MANEQGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPMTFPPEALWVTVG 472
Query: 247 TGGIFLLVTLVTVCACWKPSKRKQKKLEKQNSLEYMDQNDDRLKPEADTLPRSGEQE 303
+ + + CW+ K KQ E+ E D + K L S +E
Sbjct: 473 LSVCLIALLVALAFVCWR--KIKQSCEEENAGAEDQDGEGEGSKTALQPLKHSDSKE 527
Score = 56.6 bits (135), Expect = 4e-08
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 95 YRDRIRLFE------NGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRP 148
Y +R LF N SL L +++ADEG++ +SI D G ++L V P S+P
Sbjct: 89 YANRTALFPDLLAQGNASLRLQRVRVADEGSFTCFVSIRD---FGSAAVSLQVAAPYSKP 145
Query: 149 QVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGK--PLL-NDSRMLLSPDQ---KVL 202
+ + L + T+ CS G + + +DG+ PL N + ++ +Q V
Sbjct: 146 SMTLEPNKDLRPGDTVTITCSSYQGYPEAEVFWQDGQGVPLTGNVTTSQMANEQGLFDVH 205
Query: 203 TITRVLMEDDDLYSCMVENPISQ 225
+I RV++ + YSC+V NP+ Q
Sbjct: 206 SILRVVLGANGTYSCLVRNPVLQ 228
>gi|54607118 leucine-rich repeats and immunoglobulin-like domains 1
[Homo sapiens]
Length = 1093
Score = 64.3 bits (155), Expect = 2e-10
Identities = 70/316 (22%), Positives = 124/316 (39%), Gaps = 43/316 (13%)
Query: 46 TVGKSALLSVQYSSTSSDRPVVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIR--LFE 103
T+ + + ++ ++T P + WQ GT P R+R + +
Sbjct: 609 TIRTTTMARLECAATGHPNPQIAWQKDG---------------GTDFPAARERRMHVMPD 653
Query: 104 NGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEA 163
+ ++D+++ D G Y S T G + N T+ V + V+ V+ + E
Sbjct: 654 DDVFFITDVKIDDAGVY----SCTAQNSAGSISANATLTVLETPSLVVPLEDRVVSVGET 709
Query: 164 FTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPI 223
L C P TW K +PL R L+PD ++L + V+ ED Y+C + N +
Sbjct: 710 VALQCKATGNPPPRITWFKGDRPLSLTERHHLTPDNQLLVVQNVVAEDAGRYTCEMSNTL 769
Query: 224 SQGRSLPVKITVYRRSSLYIILSTGGIF--------LLVTLVTVCACWKPSKRKQKKLEK 275
R+ +++V + +T GIF +L +LV VC ++ K+ +
Sbjct: 770 GTERA-HSQLSVLPAAGCRKDGTTVGIFTIAVVSSIVLTSLVWVCIIYQTRKKSE----- 823
Query: 276 QNSLEYMDQNDDRLKPEADTLPRSGEQERKNPMALYILKDKDSPETE---ENPAPEPRSA 332
EY N D D Q + +++ + P+ E+ PR A
Sbjct: 824 ----EYSVTNTDETVVPPDVPSYLSSQGTLSDRQETVVRTEGGPQANGHIESNGVCPRDA 879
Query: 333 TE-PGPPGYSVSPAVP 347
+ P P +SV+ P
Sbjct: 880 SHFPEPDTHSVACRQP 895
>gi|40255013 carcinoembryonic antigen-related cell adhesion molecule
6 (non-specific cross reacting antigen) [Homo sapiens]
Length = 344
Score = 63.2 bits (152), Expect = 4e-10
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 87 VIGTLR----PDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVD 142
VIGT + P Y R ++ N SLL+ ++ D G Y +++ I D E T V
Sbjct: 83 VIGTQQATPGPAYSGRETIYPNASLLIQNVTQNDTGFYTLQV-IKSDLVNEEATGQFHVY 141
Query: 143 VPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVL 202
+ +P + ++ +E +A C E +Y W +G+ L R+ LS L
Sbjct: 142 PELPKPSISSNNSNPVEDKDAVAFTCEPEV-QNTTYLWWVNGQSLPVSPRLQLSNGNMTL 200
Query: 203 TITRVLMEDDDLYSCMVENPISQGRSLPVKITV 235
T+ V D Y C ++NP S RS PV + V
Sbjct: 201 TLLSVKRNDAGSYECEIQNPASANRSDPVTLNV 233
>gi|85861202 carcinoembryonic antigen-related cell adhesion molecule
16 [Homo sapiens]
Length = 484
Score = 63.2 bits (152), Expect = 4e-10
Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 17/222 (7%)
Query: 15 LRLAPFVYLLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQYSSTSSDRPVVKWQLKRD 74
L + + + L P EG N+T ++HG G+ S T S +V
Sbjct: 75 LNVGAEISITLEPAQPSEGDNVTL---VVHGLSGELLAYSWYAGPTLSVSYLV------- 124
Query: 75 KPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGE 134
+ + S G E G P + R + +GSL + + GTY ++ + T
Sbjct: 125 --ASYIVSTGDETPG---PAHTGREAVRPDGSLDIQGILPRHSGTYILQ-TFNRQLQTEV 178
Query: 135 KTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRML 194
++ V +++P VL ST ++E + L CS + T W +G L R+
Sbjct: 179 GYGHVQVHEILAQPTVLANSTALVERRDTLRLMCSSPSPTA-EVRWFFNGGALPVALRLG 237
Query: 195 LSPDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITVY 236
LSPD +VL + E+ Y C V NP+S RS P+ +TVY
Sbjct: 238 LSPDGRVLARHGIRREEAGAYQCEVWNPVSVSRSEPINLTVY 279
>gi|194328710 pregnancy specific beta-1-glycoprotein 8 isoform b
[Homo sapiens]
Length = 419
Score = 62.8 bits (151), Expect = 6e-10
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 93 PDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDT---FTGEKTINLTVDVPISRPQ 149
P Y R ++ N SLL+ ++ D G+Y + I + D TG T L ++ P +P
Sbjct: 93 PAYSGRETIYSNASLLIQNVTQEDAGSYTLHIIMGGDENRGVTGHFTFTLYLETP--KPS 150
Query: 150 VLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLM 209
+ + E EA +L C E SY W +G+ L R+ LS + L + V
Sbjct: 151 ISSSKLNPREAMEAVSLTCDPET-PDASYLWWMNGQSLPMSHRLQLSETNRTLFLLGVTK 209
Query: 210 EDDDLYSCMVENPISQGRSLPVKITV 235
Y C + NP+S RS P + +
Sbjct: 210 YTAGPYECEIRNPVSASRSDPFTLNL 235
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 100 RLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQV--LVASTTV 157
R EN L+L + + G Y+ EI D + G ++ +T++V + P + + S T
Sbjct: 288 RPIENRILILPSVTRNETGPYQCEIR---DQYGGIRSYPVTLNV-LYGPDLPRIYPSFTY 343
Query: 158 LELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSC 217
E L+CS ++ Y+W +GK L+ + L I ++ + LY+C
Sbjct: 344 YRSGEVLYLSCSADSNPPAQYSWTINGKFQLSGQK---------LFIPQITTKHSGLYAC 394
Query: 218 MVENPIS---QGRSLPVKIT 234
V N + +S+ VK++
Sbjct: 395 SVRNSATGKESSKSMTVKVS 414
Score = 35.4 bits (80), Expect = 0.096
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Query: 98 RIRLFE-NGSLLLSDLQLADEGTYEVEISITDDTFTGEK-TINLTVDVPISRPQVLVAST 155
R++L E N +L L + G YE EI + T+NL +P +P + + +
Sbjct: 192 RLQLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPFTLNLLPKLP--KPYITINNL 249
Query: 156 TVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLY 215
E + C ++ +Y W +G+ L R+ + ++L + V + Y
Sbjct: 250 KPRENKDVLNFTCEPKSENY-TYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPY 308
Query: 216 SCMVENPISQGRSLPVKITV 235
C + + RS PV + V
Sbjct: 309 QCEIRDQYGGIRSYPVTLNV 328
>gi|51510887 pregnancy specific beta-1-glycoprotein 8 isoform a
[Homo sapiens]
Length = 426
Score = 62.8 bits (151), Expect = 6e-10
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 93 PDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDT---FTGEKTINLTVDVPISRPQ 149
P Y R ++ N SLL+ ++ D G+Y + I + D TG T L ++ P +P
Sbjct: 93 PAYSGRETIYSNASLLIQNVTQEDAGSYTLHIIMGGDENRGVTGHFTFTLYLETP--KPS 150
Query: 150 VLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLM 209
+ + E EA +L C E SY W +G+ L R+ LS + L + V
Sbjct: 151 ISSSKLNPREAMEAVSLTCDPET-PDASYLWWMNGQSLPMSHRLQLSETNRTLFLLGVTK 209
Query: 210 EDDDLYSCMVENPISQGRSLPVKITV 235
Y C + NP+S RS P + +
Sbjct: 210 YTAGPYECEIRNPVSASRSDPFTLNL 235
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 100 RLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQV--LVASTTV 157
R EN L+L + + G Y+ EI D + G ++ +T++V + P + + S T
Sbjct: 288 RPIENRILILPSVTRNETGPYQCEIR---DQYGGIRSYPVTLNV-LYGPDLPRIYPSFTY 343
Query: 158 LELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSC 217
E L+CS ++ Y+W +GK L+ + L I ++ + LY+C
Sbjct: 344 YRSGEVLYLSCSADSNPPAQYSWTINGKFQLSGQK---------LFIPQITTKHSGLYAC 394
Query: 218 MVENPIS---QGRSLPVKIT 234
V N + +S+ VK++
Sbjct: 395 SVRNSATGKESSKSMTVKVS 414
Score = 35.4 bits (80), Expect = 0.096
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Query: 98 RIRLFE-NGSLLLSDLQLADEGTYEVEISITDDTFTGEK-TINLTVDVPISRPQVLVAST 155
R++L E N +L L + G YE EI + T+NL +P +P + + +
Sbjct: 192 RLQLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPFTLNLLPKLP--KPYITINNL 249
Query: 156 TVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLY 215
E + C ++ +Y W +G+ L R+ + ++L + V + Y
Sbjct: 250 KPRENKDVLNFTCEPKSENY-TYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPY 308
Query: 216 SCMVENPISQGRSLPVKITV 235
C + + RS PV + V
Sbjct: 309 QCEIRDQYGGIRSYPVTLNV 328
>gi|13376852 CD276 antigen isoform b [Homo sapiens]
Length = 316
Score = 62.4 bits (150), Expect = 7e-10
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 22/226 (9%)
Query: 95 YRDRIRLFE------NGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRP 148
Y +R LF N SL L +++ADEG++ +SI D G ++L V P S+P
Sbjct: 89 YANRTALFPDLLAQGNASLRLQRVRVADEGSFTCFVSIRD---FGSAAVSLQVAAPYSKP 145
Query: 149 QVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGK--PLL-NDSRMLLSPDQ---KVL 202
+ + L + T+ CS G + + +DG+ PL N + ++ +Q V
Sbjct: 146 SMTLEPNKDLRPGDTVTITCSSYRGYPEAEVFWQDGQGVPLTGNVTTSQMANEQGLFDVH 205
Query: 203 TITRVLMEDDDLYSCMVENPI-SQGRSLPVKIT----VYRRSSLYIILSTGGIFLLVTLV 257
++ RV++ + YSC+V NP+ Q V IT + +L++ + + + +
Sbjct: 206 SVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPMTFPPEALWVTVGLSVCLIALLVA 265
Query: 258 TVCACWKPSKRKQKKLEKQNSLEYMDQNDDRLKPEADTLPRSGEQE 303
CW+ K KQ E+ E D + K L S +E
Sbjct: 266 LAFVCWR--KIKQSCEEENAGAEDQDGEGEGSKTALQPLKHSDSKE 309
>gi|8393638 F11 receptor precursor [Homo sapiens]
Length = 299
Score = 62.0 bits (149), Expect = 1e-09
Identities = 66/262 (25%), Positives = 103/262 (39%), Gaps = 25/262 (9%)
Query: 6 GALSRASRALRLAPFVYLLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQYSSTSSDRP 65
G ++ R L L F+ +L+ + L V + S + LS YS SS R
Sbjct: 2 GTKAQVERKL-LCLFILAILLCSLALGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPR- 59
Query: 66 VVKWQLKRDKPVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEIS 125
V+W+ + +V + Y DR+ G + + D GTY +S
Sbjct: 60 -VEWKFDQGDTTRLVC-----YNNKITASYEDRVTFLPTG-ITFKSVTREDTGTYTCMVS 112
Query: 126 ITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPS-YTWLKDG 184
GE + L V VP S+P V + S+ + L CS ++G+ PS YTW KDG
Sbjct: 113 EEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT--IGNRAVLTCSEQDGSPPSEYTWFKDG 170
Query: 185 KPL---------LNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITV 235
+ ++S +L+P L + D YSC N G P+
Sbjct: 171 IVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN----GYGTPMTSNA 226
Query: 236 YRRSSLYIILSTGGIFLLVTLV 257
R ++ + +LVTL+
Sbjct: 227 VRMEAVERNVGVIVAAVLVTLI 248
>gi|21361392 pregnancy specific beta-1-glycoprotein 1 [Homo sapiens]
Length = 426
Score = 62.0 bits (149), Expect = 1e-09
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 93 PDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDT---FTGEKTINLTVDVPISRPQ 149
P Y R + N SLL+ ++ D G+Y + I DD TG T L ++ P +P
Sbjct: 93 PAYSGRETAYSNASLLIQNVTREDAGSYTLHIIKGDDGTRGVTGRFTFTLHLETP--KPS 150
Query: 150 VLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLM 209
+ ++ E EA +L C E SY W +G+ L + LS + L + V
Sbjct: 151 ISSSNLNPRETMEAVSLTCDPET-PDASYLWWMNGQSLPMTHSLKLSETNRTLFLLGVTK 209
Query: 210 EDDDLYSCMVENPISQGRSLPVKITV 235
Y C + NP+S RS PV + +
Sbjct: 210 YTAGPYECEIRNPVSASRSDPVTLNL 235
Score = 35.4 bits (80), Expect = 0.096
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 100 RLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQV--LVASTTV 157
R EN L+L + + G Y+ EI D + G ++ +T++V + P + + S T
Sbjct: 288 RPIENRILILPSVTRNETGPYQCEIR---DRYGGIRSDPVTLNV-LYGPDLPRIYPSFTY 343
Query: 158 LELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSC 217
E L+CS ++ Y+W +N+ L P QK L I + + LY C
Sbjct: 344 YRSGEVLYLSCSADSNPPAQYSW------TINEKFQL--PGQK-LFIRHITTKHSGLYVC 394
Query: 218 MVENPIS---QGRSLPVKIT 234
V N + +S+ V+++
Sbjct: 395 SVRNSATGKESSKSMTVEVS 414
Score = 33.5 bits (75), Expect = 0.37
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 4/133 (3%)
Query: 104 NGSLLLSDLQLADEGTYEVEI-SITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSE 162
N +L L + G YE EI + + + T+NL +P +P + + + E +
Sbjct: 199 NRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP--KPYITINNLNPRENKD 256
Query: 163 AFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENP 222
C ++ +Y W +G+ L R+ + ++L + V + Y C + +
Sbjct: 257 VLNFTCEPKSENY-TYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEIRDR 315
Query: 223 ISQGRSLPVKITV 235
RS PV + V
Sbjct: 316 YGGIRSDPVTLNV 328
>gi|19923195 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 1 precursor [Homo sapiens]
Length = 526
Score = 61.6 bits (148), Expect = 1e-09
Identities = 63/240 (26%), Positives = 104/240 (43%), Gaps = 18/240 (7%)
Query: 107 LLLSDLQLADEGTYEVEI--SITDDTFTGEKTINLTVDVPI-SRPQVLVASTTVLELSEA 163
L + ++ + + G+Y S+T T KTI +T P+ ++PQ+ + TTV ++
Sbjct: 284 LFIPNITVNNSGSYTCHANNSVTGCNRTTVKTIIVTELSPVVAKPQIKASKTTVTGDKDS 343
Query: 164 FTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPI 223
L CS N T S W + L + RM LS L+I V ED Y C V NPI
Sbjct: 344 VNLTCS-TNDTGISIRWFFKNQSLPSSERMKLSQGNTTLSINPVKREDAGTYWCEVFNPI 402
Query: 224 SQGRSLPVKITV-YRRSSLYIILSTG-------GIFLLVTLVTVC-ACWKPSKRKQKKLE 274
S+ +S P+ + V Y LS G G+ LV L+ V AC+ + + +
Sbjct: 403 SKNQSDPIMLNVNYNALPQENGLSPGAIAGIVIGVVALVALIAVALACFLHFGKTGRASD 462
Query: 275 KQNSLEYMDQNDDRLKPEADTLPRSGEQERKNPMALYILKDKDSPETEENPAPEPRSATE 334
+++ E+ + + ++ P + N + L + T+ A +ATE
Sbjct: 463 QRDLTEHKPSVSNHTQDHSNDPP-----NKMNEVTYSTLNFEAQQPTQPTSASPSLTATE 517
Score = 61.2 bits (147), Expect = 2e-09
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 3/154 (1%)
Query: 82 SIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTV 141
+IGT+ T P R ++ N SLL+ ++ D G Y +++ I D E T V
Sbjct: 83 AIGTQQ-ATPGPANSGRETIYPNASLLIQNVTQNDTGFYTLQV-IKSDLVNEEATGQFHV 140
Query: 142 DVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKV 201
+ +P + ++ +E +A C E +Y W + + L R+ LS +
Sbjct: 141 YPELPKPSISSNNSNPVEDKDAVAFTCEPET-QDTTYLWWINNQSLPVSPRLQLSNGNRT 199
Query: 202 LTITRVLMEDDDLYSCMVENPISQGRSLPVKITV 235
LT+ V D Y C ++NP+S RS PV + V
Sbjct: 200 LTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNV 233
>gi|42560235 pregnancy specific beta-1-glycoprotein 4 isoform 1
[Homo sapiens]
Length = 419
Score = 61.6 bits (148), Expect = 1e-09
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 93 PDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDT---FTGEKTINLTVDVPISRPQ 149
P Y R R++ N SLL+ ++ D G+Y + I D TG T L ++ P +P
Sbjct: 93 PAYSGRERVYSNASLLIQNVTQEDAGSYTLHIIKRRDGTGGVTGHFTFTLHLETP--KPS 150
Query: 150 VLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLM 209
+ ++ E EA L C SY W +G+ L R+ LS + L I V
Sbjct: 151 ISSSNLNPREAMEAVILTCDPATPAA-SYQWWMNGQSLPMTHRLQLSKTNRTLFIFGVTK 209
Query: 210 EDDDLYSCMVENPISQGRSLPVKITVYRRSS 240
Y C + NP+S RS PV + + + S
Sbjct: 210 YIAGPYECEIRNPVSASRSDPVTLNLLPKLS 240
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 100 RLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQV--LVASTTV 157
R EN L+L ++ + G Y+ EI D + G ++ +T++V + P + + S T
Sbjct: 288 RPIENRILILPNVTRNETGPYQCEIR---DRYGGIRSDPVTLNV-LYGPDLPSIYPSFTY 343
Query: 158 LELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSC 217
E L+C E+ + Y+W +GK L+ + L+I ++ + LY+C
Sbjct: 344 YRSGENLYLSCFAESNPRAQYSWTINGKFQLSGQK---------LSIPQITTKHSGLYAC 394
Query: 218 MVENPIS---QGRSLPVKIT 234
V N + +S+ VK++
Sbjct: 395 SVRNSATGKESSKSITVKVS 414
Score = 33.9 bits (76), Expect = 0.28
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Query: 118 GTYEVEISITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPS 177
G YE EI + + + L + +S+P + + + E + T C ++ +
Sbjct: 213 GPYECEIR-NPVSASRSDPVTLNLLPKLSKPYITINNLNPRENKDVLTFTCEPKSKNY-T 270
Query: 178 YTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITV 235
Y W +G+ L R+ + ++L + V + Y C + + RS PV + V
Sbjct: 271 YIWWLNGQSLPVSPRVKRPIENRILILPNVTRNETGPYQCEIRDRYGGIRSDPVTLNV 328
>gi|68161541 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 2 precursor [Homo sapiens]
Length = 464
Score = 61.2 bits (147), Expect = 2e-09
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 3/154 (1%)
Query: 82 SIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTV 141
+IGT+ T P R ++ N SLL+ ++ D G Y +++ I D E T V
Sbjct: 83 AIGTQQ-ATPGPANSGRETIYPNASLLIQNVTQNDTGFYTLQV-IKSDLVNEEATGQFHV 140
Query: 142 DVPISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKV 201
+ +P + ++ +E +A C E +Y W + + L R+ LS +
Sbjct: 141 YPELPKPSISSNNSNPVEDKDAVAFTCEPET-QDTTYLWWINNQSLPVSPRLQLSNGNRT 199
Query: 202 LTITRVLMEDDDLYSCMVENPISQGRSLPVKITV 235
LT+ V D Y C ++NP+S RS PV + V
Sbjct: 200 LTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNV 233
Score = 60.5 bits (145), Expect = 3e-09
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 107 LLLSDLQLADEGTYEVEI--SITDDTFTGEKTINLTVDVPI-SRPQVLVASTTVLELSEA 163
L + ++ + + G+Y S+T T KTI +T P+ ++PQ+ + TTV ++
Sbjct: 284 LFIPNITVNNSGSYTCHANNSVTGCNRTTVKTIIVTELSPVVAKPQIKASKTTVTGDKDS 343
Query: 164 FTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPI 223
L CS N T S W + L + RM LS L+I V ED Y C V NPI
Sbjct: 344 VNLTCS-TNDTGISIRWFFKNQSLPSSERMKLSQGNTTLSINPVKREDAGTYWCEVFNPI 402
Query: 224 SQGRSLPVKITV-YRRSSLYIILSTG-------GIFLLVTLVTVC-ACW 263
S+ +S P+ + V Y LS G G+ LV L+ V AC+
Sbjct: 403 SKNQSDPIMLNVNYNALPQENGLSPGAIAGIVIGVVALVALIAVALACF 451
>gi|4506175 pregnancy specific beta-1-glycoprotein 6 isoform a [Homo
sapiens]
Length = 435
Score = 61.2 bits (147), Expect = 2e-09
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Query: 93 PDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDT---FTGEKTINLTVDVPISRPQ 149
P Y R ++ N SLL+ ++ D G+Y + I D TG T+ L + P +P
Sbjct: 92 PAYSGRETVYSNASLLIQNVTQEDAGSYTLHIIKRGDGTGGVTGYFTVTLYSETP--KPS 149
Query: 150 VLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLM 209
+ ++ E+ EA L C E SY WL +G+ L R+ LS + L + V
Sbjct: 150 ISSSNLNPREVMEAVRLICDPET-PDASYLWLLNGQNLPMTHRLQLSKTNRTLYLFGVTK 208
Query: 210 EDDDLYSCMVENPISQGRSLPVKITV 235
Y C + NP+S RS PV + +
Sbjct: 209 YIAGPYECEIRNPVSASRSDPVTLNL 234
Score = 35.4 bits (80), Expect = 0.096
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 100 RLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQV--LVASTTV 157
R EN L+L + + G Y+ EI D + G ++ +T++V + P + + S T
Sbjct: 287 RPIENRILILPSVTRNETGPYQCEIR---DRYGGIRSNPVTLNV-LYGPDLPRIYPSFTY 342
Query: 158 LELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSC 217
E L+C ++ Y+W +GK L+ + L I ++ LY+C
Sbjct: 343 YRSGENLDLSCFADSNPPAEYSWTINGKFQLSGQK---------LFIPQITTNHSGLYAC 393
Query: 218 MVENPISQ---GRSLPVKIT 234
V N + +S+ VK++
Sbjct: 394 SVRNSATGKEISKSMIVKVS 413
Score = 32.7 bits (73), Expect = 0.62
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 4/133 (3%)
Query: 104 NGSLLLSDLQLADEGTYEVEI-SITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSE 162
N +L L + G YE EI + + + T+NL +P+ P + + + E +
Sbjct: 198 NRTLYLFGVTKYIAGPYECEIRNPVSASRSDPVTLNLLPKLPM--PYITINNLNPREKKD 255
Query: 163 AFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENP 222
C ++ +Y W +G+ L R+ + ++L + V + Y C + +
Sbjct: 256 VLAFTCEPKSRNY-TYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEIRDR 314
Query: 223 ISQGRSLPVKITV 235
RS PV + V
Sbjct: 315 YGGIRSNPVTLNV 327
>gi|73661174 pregnancy specific beta-1-glycoprotein 6 isoform b
[Homo sapiens]
Length = 424
Score = 61.2 bits (147), Expect = 2e-09
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Query: 93 PDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDT---FTGEKTINLTVDVPISRPQ 149
P Y R ++ N SLL+ ++ D G+Y + I D TG T+ L + P +P
Sbjct: 92 PAYSGRETVYSNASLLIQNVTQEDAGSYTLHIIKRGDGTGGVTGYFTVTLYSETP--KPS 149
Query: 150 VLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLM 209
+ ++ E+ EA L C E SY WL +G+ L R+ LS + L + V
Sbjct: 150 ISSSNLNPREVMEAVRLICDPET-PDASYLWLLNGQNLPMTHRLQLSKTNRTLYLFGVTK 208
Query: 210 EDDDLYSCMVENPISQGRSLPVKITV 235
Y C + NP+S RS PV + +
Sbjct: 209 YIAGPYECEIRNPVSASRSDPVTLNL 234
Score = 35.4 bits (80), Expect = 0.096
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 100 RLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQV--LVASTTV 157
R EN L+L + + G Y+ EI D + G ++ +T++V + P + + S T
Sbjct: 287 RPIENRILILPSVTRNETGPYQCEIR---DRYGGIRSNPVTLNV-LYGPDLPRIYPSFTY 342
Query: 158 LELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSC 217
E L+C ++ Y+W +GK L+ + L I ++ LY+C
Sbjct: 343 YRSGENLDLSCFADSNPPAEYSWTINGKFQLSGQK---------LFIPQITTNHSGLYAC 393
Query: 218 MVENPISQ---GRSLPVKIT 234
V N + +S+ VK++
Sbjct: 394 SVRNSATGKEISKSMIVKVS 413
Score = 32.7 bits (73), Expect = 0.62
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 4/133 (3%)
Query: 104 NGSLLLSDLQLADEGTYEVEI-SITDDTFTGEKTINLTVDVPISRPQVLVASTTVLELSE 162
N +L L + G YE EI + + + T+NL +P+ P + + + E +
Sbjct: 198 NRTLYLFGVTKYIAGPYECEIRNPVSASRSDPVTLNLLPKLPM--PYITINNLNPREKKD 255
Query: 163 AFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENP 222
C ++ +Y W +G+ L R+ + ++L + V + Y C + +
Sbjct: 256 VLAFTCEPKSRNY-TYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEIRDR 314
Query: 223 ISQGRSLPVKITV 235
RS PV + V
Sbjct: 315 YGGIRSNPVTLNV 327
>gi|47419900 pregnancy specific beta-1-glycoprotein 4 isoform 2
[Homo sapiens]
Length = 326
Score = 61.2 bits (147), Expect = 2e-09
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 93 PDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDT---FTGEKTINLTVDVPISRPQ 149
P Y R R++ N SLL+ ++ D G+Y + I D TG T L ++ P +P
Sbjct: 93 PAYSGRERVYSNASLLIQNVTQEDAGSYTLHIIKRRDGTGGVTGHFTFTLHLETP--KPS 150
Query: 150 VLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLM 209
+ ++ E EA L C SY W +G+ L R+ LS + L I V
Sbjct: 151 ISSSNLNPREAMEAVILTCDPATPAA-SYQWWMNGQSLPMTHRLQLSKTNRTLFIFGVTK 209
Query: 210 EDDDLYSCMVENPISQGRSLPVKITV 235
Y C + NP+S RS PV + +
Sbjct: 210 YIAGPYECEIRNPVSASRSDPVTLNL 235
Score = 33.5 bits (75), Expect = 0.37
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 20/123 (16%)
Query: 118 GTYEVEI-SITDDTFTGEKTINLT--VDVPISRPQVLVASTTVLELSEAFTLNCSHENGT 174
G YE EI + + + T+NL D+P P S T E L+C E+
Sbjct: 213 GPYECEIRNPVSASRSDPVTLNLLHGPDLPSIYP-----SFTYYRSGENLYLSCFAESNP 267
Query: 175 KPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPIS---QGRSLPV 231
+ Y+W +GK L+ + L+I ++ + LY+C V N + +S+ V
Sbjct: 268 RAQYSWTINGKFQLSGQK---------LSIPQITTKHSGLYACSVRNSATGKESSKSITV 318
Query: 232 KIT 234
K++
Sbjct: 319 KVS 321
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 60.8 bits (146), Expect = 2e-09
Identities = 63/269 (23%), Positives = 117/269 (43%), Gaps = 20/269 (7%)
Query: 23 LLLIQTDPLEGVNITSPVRLIHGTVGKSALLSVQYSSTSSDR-PV-VKWQLKRDKPVTVV 80
LL D ++IT+P +I G++A L +++ + D+ P+ ++W + V
Sbjct: 9 LLCGVVDFARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVD 68
Query: 81 QSI----GTEVIGTLRPDYRDRIRLFEN------GSLLLSDLQLADEGTYEVEISITDDT 130
Q I G ++ PD + R+ N S+ +++LQL+D GTY+ ++
Sbjct: 69 QVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPG- 127
Query: 131 FTGEKTINLTVDVPISRPQVLVASTTVLELSEAFTLNCSHENGTKP-SYTWLKDGKPLLN 189
K I+L V V S + V + E+ F + C + G+ P Y W K
Sbjct: 128 -VANKKIHLVVLVKPSGARCYVDGSE--EIGSDFKIKCEPKEGSLPLQYEWQKLSDSQKM 184
Query: 190 DSRMLLSPDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITVYRRSSLYIILSTG- 248
+ L V+++ E YSC V N + + L +++ V S+ +++
Sbjct: 185 PTSWLAEMTSSVISVKNASSEYSGTYSCTVRNRVGSDQCL-LRLNVVPPSNKAGLIAGAI 243
Query: 249 -GIFLLVTLVTVCACWKPSKRKQKKLEKQ 276
G L + L+ + KR+++K EK+
Sbjct: 244 IGTLLALALIGLIIFCCRKKRREEKYEKE 272
>gi|5901930 carcinoembryonic antigen-related cell adhesion molecule
7 [Homo sapiens]
Length = 265
Score = 60.8 bits (146), Expect = 2e-09
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 2/143 (1%)
Query: 93 PDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQVLV 152
P + R ++ NG+LL+ ++ D G Y + + I ++ E T V +P +
Sbjct: 94 PAHNGRETIYPNGTLLIQNVTHNDAGFYTLHV-IKENLVNEEVTRQFYVFSEPPKPSITS 152
Query: 153 ASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDD 212
+ +E + L C E +Y W + + LL R+LLS D + L + D
Sbjct: 153 NNFNPVENKDIVVLTCQPET-QNTTYLWWVNNQSLLVSPRLLLSTDNRTLVLLSATKNDI 211
Query: 213 DLYSCMVENPISQGRSLPVKITV 235
Y C ++NP+ RS PV + V
Sbjct: 212 GPYECEIQNPVGASRSDPVTLNV 234
>gi|21314600 carcinoembryonic antigen-related cell adhesion molecule
8 [Homo sapiens]
Length = 349
Score = 60.1 bits (144), Expect = 4e-09
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 93 PDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQVLV 152
P Y +R ++ N SLL+ ++ D G+Y +++ I + + E T +V +P +
Sbjct: 93 PAYSNRETIYPNASLLMRNVTRNDTGSYTLQV-IKLNLMSEEVTGQFSVHPETPKPSISS 151
Query: 153 ASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLLNDSRMLLSPDQKVLTITRVLMEDD 212
++ +E +A C E +Y W +G+ L R+ LS + LT+ V D
Sbjct: 152 NNSNPVEDKDAVAFTCEPET-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLLSVTRNDV 210
Query: 213 DLYSCMVENPISQGRSLPVKITV 235
Y C ++NP S S PV + V
Sbjct: 211 GPYECEIQNPASANFSDPVTLNV 233
>gi|94420689 neural cell adhesion molecule 1 isoform 1 [Homo
sapiens]
Length = 848
Score = 59.7 bits (143), Expect = 5e-09
Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 21/214 (9%)
Query: 76 PVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEK 135
P + + G +VI L+ D R + N L + ++ DEGTY E I K
Sbjct: 147 PTIIWKHKGRDVI--LKKDVR--FIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFK 202
Query: 136 TINLTVDVP--ISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLL---ND 190
I + V+VP I Q +V +T L ++ TL C E +P+ +W KDG+ + +D
Sbjct: 203 DIQVIVNVPPTIQARQNIVNATA--NLGQSVTLVCDAEGFPEPTMSWTKDGEQIEQEEDD 260
Query: 191 SRMLLSPDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITVYRRSSLYIILSTGGI 250
+ + S D LTI +V D+ Y C+ EN + + + + V+ + + + + +
Sbjct: 261 EKYIFSDDSSQLTIKKVDKNDEAEYICIAENKAGE-QDATIHLKVFAKPKITYVENQTAM 319
Query: 251 FLLVTLVTVCAC---------WKPSKRKQKKLEK 275
L + C W+ S R EK
Sbjct: 320 ELEEQVTLTCEASGDPIPSITWRTSTRNISSEEK 353
Score = 36.6 bits (83), Expect = 0.043
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 103 ENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQVL-VASTTVLELS 161
++ L + + DE Y I I ++ GE+ + + V ++P++ V + T +EL
Sbjct: 268 DSSQLTIKKVDKNDEAEY---ICIAENK-AGEQDATIHLKV-FAKPKITYVENQTAMELE 322
Query: 162 EAFTLNCSHENGTKPSYTWLKDGKPLLN-----DSRMLLSPDQKV--LTITRVLMEDDDL 214
E TL C PS TW + + + D M++ +V LT+ + D
Sbjct: 323 EQVTLTCEASGDPIPSITWRTSTRNISSEEKTLDGHMVVRSHARVSSLTLKSIQYTDAGE 382
Query: 215 YSCMVENPISQ 225
Y C N I Q
Sbjct: 383 YICTASNTIGQ 393
>gi|115529482 neural cell adhesion molecule 1 isoform 2 [Homo
sapiens]
Length = 858
Score = 59.7 bits (143), Expect = 5e-09
Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 21/214 (9%)
Query: 76 PVTVVQSIGTEVIGTLRPDYRDRIRLFENGSLLLSDLQLADEGTYEVEISITDDTFTGEK 135
P + + G +VI L+ D R + N L + ++ DEGTY E I K
Sbjct: 147 PTIIWKHKGRDVI--LKKDVR--FIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFK 202
Query: 136 TINLTVDVP--ISRPQVLVASTTVLELSEAFTLNCSHENGTKPSYTWLKDGKPLL---ND 190
I + V+VP I Q +V +T L ++ TL C E +P+ +W KDG+ + +D
Sbjct: 203 DIQVIVNVPPTIQARQNIVNATA--NLGQSVTLVCDAEGFPEPTMSWTKDGEQIEQEEDD 260
Query: 191 SRMLLSPDQKVLTITRVLMEDDDLYSCMVENPISQGRSLPVKITVYRRSSLYIILSTGGI 250
+ + S D LTI +V D+ Y C+ EN + + + + V+ + + + + +
Sbjct: 261 EKYIFSDDSSQLTIKKVDKNDEAEYICIAENKAGE-QDATIHLKVFAKPKITYVENQTAM 319
Query: 251 FLLVTLVTVCAC---------WKPSKRKQKKLEK 275
L + C W+ S R EK
Sbjct: 320 ELEEQVTLTCEASGDPIPSITWRTSTRNISSEEK 353
Score = 32.7 bits (73), Expect = 0.62
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 23/141 (16%)
Query: 103 ENGSLLLSDLQLADEGTYEVEISITDDTFTGEKTINLTVDVPISRPQVL-VASTTVLELS 161
++ L + + DE Y I I ++ GE+ + + V ++P++ V + T +EL
Sbjct: 268 DSSQLTIKKVDKNDEAEY---ICIAENK-AGEQDATIHLKV-FAKPKITYVENQTAMELE 322
Query: 162 EAFTLNCSHENGTKPSYTWLKDGKPLLN---------------DSRMLLSPDQKV--LTI 204
E TL C PS TW + + + D M++ +V LT+
Sbjct: 323 EQVTLTCEASGDPIPSITWRTSTRNISSEEKASWTRPEKQETLDGHMVVRSHARVSSLTL 382
Query: 205 TRVLMEDDDLYSCMVENPISQ 225
+ D Y C N I Q
Sbjct: 383 KSIQYTDAGEYICTASNTIGQ 403
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,591,537
Number of Sequences: 37866
Number of extensions: 998871
Number of successful extensions: 9905
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 876
Number of HSP's that attempted gapping in prelim test: 6761
Number of HSP's gapped (non-prelim): 3599
length of query: 416
length of database: 18,247,518
effective HSP length: 105
effective length of query: 311
effective length of database: 14,271,588
effective search space: 4438463868
effective search space used: 4438463868
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.