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Search of human proteins with 239756278
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
sapiens]
(238 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ... 486 e-138
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ... 486 e-138
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ... 486 e-138
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 51 8e-07
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 51 8e-07
gi|33286446 opioid growth factor receptor [Homo sapiens] 50 1e-06
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 50 1e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 50 2e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 50 2e-06
gi|50511941 EMI domain containing 1 [Homo sapiens] 50 2e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 49 5e-06
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 47 1e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 47 1e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 47 1e-05
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 47 1e-05
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 47 1e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 46 3e-05
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 45 4e-05
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 45 4e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 45 6e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 45 6e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 45 6e-05
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 45 6e-05
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 45 6e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 45 7e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 44 9e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 44 1e-04
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 44 1e-04
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 44 1e-04
gi|6754638 microtubule-associated protein tau isoform 2 [Homo sa... 44 2e-04
>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
sapiens]
Length = 238
Score = 486 bits (1252), Expect = e-138
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MMSKGTQTRLAQIPEQARFLMNLLVTDLNTVVRQVDHNTMKLTEQRAYEDDDLHGGGELA 60
MMSKGTQTRLAQIPEQARFLMNLLVTDLNTVVRQVDHNTMKLTEQRAYEDDDLHGGGELA
Sbjct: 1 MMSKGTQTRLAQIPEQARFLMNLLVTDLNTVVRQVDHNTMKLTEQRAYEDDDLHGGGELA 60
Query: 61 VQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGAS 120
VQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGAS
Sbjct: 61 VQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGAS 120
Query: 121 PPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180
PPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK
Sbjct: 121 PPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180
Query: 181 KAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
KAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG
Sbjct: 181 KAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
sapiens]
Length = 238
Score = 486 bits (1252), Expect = e-138
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MMSKGTQTRLAQIPEQARFLMNLLVTDLNTVVRQVDHNTMKLTEQRAYEDDDLHGGGELA 60
MMSKGTQTRLAQIPEQARFLMNLLVTDLNTVVRQVDHNTMKLTEQRAYEDDDLHGGGELA
Sbjct: 1 MMSKGTQTRLAQIPEQARFLMNLLVTDLNTVVRQVDHNTMKLTEQRAYEDDDLHGGGELA 60
Query: 61 VQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGAS 120
VQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGAS
Sbjct: 61 VQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGAS 120
Query: 121 PPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180
PPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK
Sbjct: 121 PPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180
Query: 181 KAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
KAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG
Sbjct: 181 KAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
sapiens]
Length = 238
Score = 486 bits (1252), Expect = e-138
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MMSKGTQTRLAQIPEQARFLMNLLVTDLNTVVRQVDHNTMKLTEQRAYEDDDLHGGGELA 60
MMSKGTQTRLAQIPEQARFLMNLLVTDLNTVVRQVDHNTMKLTEQRAYEDDDLHGGGELA
Sbjct: 1 MMSKGTQTRLAQIPEQARFLMNLLVTDLNTVVRQVDHNTMKLTEQRAYEDDDLHGGGELA 60
Query: 61 VQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGAS 120
VQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGAS
Sbjct: 61 VQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGAS 120
Query: 121 PPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180
PPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK
Sbjct: 121 PPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180
Query: 181 KAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
KAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG
Sbjct: 181 KAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 51.2 bits (121), Expect = 8e-07
Identities = 50/166 (30%), Positives = 61/166 (36%), Gaps = 23/166 (13%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTS-PT 152
P P S G G P L P+G+S PG+ G AG PG+ GA V S P
Sbjct: 599 PGPPGSIGIRGQPGSMG--LPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPV 656
Query: 153 PAPGRRGGREARLRPMPT-------PSWIPVSSHKKAARSEPAE--------RRPSLLQG 197
PG G R + P PT P P K + P + R
Sbjct: 657 GPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNP 716
Query: 198 GQRGPAHSTGMETQKEAFDGQGGRSPLPLP-----PSTAGPPPLEG 238
G+RG TG+ +K G G P P P GPP L+G
Sbjct: 717 GERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQG 762
Score = 43.1 bits (100), Expect = 2e-04
Identities = 46/157 (29%), Positives = 55/157 (35%), Gaps = 37/157 (23%)
Query: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAA----- 141
L G P P GE G P PR G PPG G G+ G GA
Sbjct: 799 LPGPLGPPGPAGPTGEKGEPGPR--------GLVGPPGSRGNPGSRGENGPTGAVGFAGP 850
Query: 142 ---DGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGG 198
DG P V P PG++G + P P + S P L+GG
Sbjct: 851 QGPDGQPGVKGEP-GEPGQKGDAGS-----PGPQGLAGSPGPHGPNGVPG------LKGG 898
Query: 199 Q--RGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGP 233
+ +GP +TG F G GR P P GP
Sbjct: 899 RGTQGPPGATG-------FPGSAGRVGPPGPAGAPGP 928
Score = 41.2 bits (95), Expect = 8e-04
Identities = 47/150 (31%), Positives = 56/150 (37%), Gaps = 16/150 (10%)
Query: 89 GIWRDPAPVMSHGEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAGA-ADGSPH 146
G+ P P HG G P + R P GA+ PG GR G PG AGA P
Sbjct: 879 GLAGSPGP---HGPNGVPGLKGGRGTQGPPGATGFPGSAGRVG---PPGPAGAPGPAGPL 932
Query: 147 VSTSPTPAPGRRG--GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAH 204
PG RG G R+ P+ P K E + P G GPA
Sbjct: 933 GEPGKEGPPGLRGDPGSHGRVGDR-GPAGPPGGPGDKGDPGEDGQPGPD----GPPGPAG 987
Query: 205 STGMETQKEAFDGQGGRSPLPLPPSTAGPP 234
+TG + GQ G +P P AG P
Sbjct: 988 TTG-QRGIVGMPGQRGERGMPGLPGPAGTP 1016
Score = 40.8 bits (94), Expect = 0.001
Identities = 44/152 (28%), Positives = 57/152 (37%), Gaps = 20/152 (13%)
Query: 96 PVMSHGEAGTPAPRAARLGA--PRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSP-- 151
P GE G P P +G+ P G PGE+G G +PGE G A GSP P
Sbjct: 235 PTGPPGEPGDPGPMGP-IGSRGPEGPPGKPGEDGEPGRNGNPGEVGFA-GSPGARGFPGA 292
Query: 152 TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQ 211
PG +G R + P S +A + P G GP GM +
Sbjct: 293 PGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPM---------GAMGPLGPRGMPGE 343
Query: 212 K-----EAFDGQGGRSPLPLPPSTAGPPPLEG 238
+ + GQ G +P P GP + G
Sbjct: 344 RGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPG 375
Score = 36.6 bits (83), Expect = 0.020
Identities = 47/153 (30%), Positives = 60/153 (39%), Gaps = 35/153 (22%)
Query: 101 GEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAGA--ADGSPHV-----STSPT 152
G G P P+ A+ P G+S P G +G G PG GA G+P V P
Sbjct: 531 GSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPL 590
Query: 153 PAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAER-----RPSLLQGGQRGPAHSTG 207
APG G RP P P I + R +P + S G+ G A + G
Sbjct: 591 GAPGEDG------RPGP-PGSIGI-------RGQPGSMGLPGPKGSSGDPGKPGEAGNAG 636
Query: 208 METQKEA--FDGQGGRSPLPLPPSTAGPPPLEG 238
+ Q+ A DG+ G P GPP L G
Sbjct: 637 VPGQRGAPGKDGEVG------PSGPVGPPGLAG 663
Score = 36.2 bits (82), Expect = 0.026
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 17/151 (11%)
Query: 96 PVMSHGEAGTPA-PRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA--------ADGSPH 146
P+ G +G P P P GA P G +G+ G PG G+ DG+P
Sbjct: 370 PLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPG 429
Query: 147 VSTSPTPAPGRRGGREARLRP-MPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPA 203
+ PT +PG G + P P P S+ + R +P + +G G +G
Sbjct: 430 -AKGPTGSPGTSGPPGSAGPPGSPGPQG---STGPQGIRGQPGDPGVPGFKGEAGPKGEP 485
Query: 204 HSTGMETQKEAFDGQGGRSPLPLPPSTAGPP 234
G++ +G R P P T GPP
Sbjct: 486 GPHGIQGPIGPPGEEGKRGPRG-DPGTVGPP 515
Score = 36.2 bits (82), Expect = 0.026
Identities = 39/141 (27%), Positives = 47/141 (33%), Gaps = 13/141 (9%)
Query: 99 SHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG-AADGSPHVSTSPTPAPGR 157
S G G P P A P G PG+EG G PG G D P P PG
Sbjct: 913 SAGRVGPPGPAGAP--GPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGP---AGPPGGPGD 967
Query: 158 RGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDG 217
+G +P P P + + +R G GPA + G A
Sbjct: 968 KGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGD 1027
Query: 218 QGGRSPLPLPPSTAGPPPLEG 238
+G PP GPP G
Sbjct: 1028 KG-------PPGPVGPPGSNG 1041
Score = 35.4 bits (80), Expect = 0.044
Identities = 45/146 (30%), Positives = 56/146 (38%), Gaps = 19/146 (13%)
Query: 101 GEAGTPAPRAARLGAP--RGASPPPGEEGRAGAWRSPGEAGAADGSPHV--STSPTPAPG 156
GE G P+ GAP RGA PG+ G G PG +G G+P + PT A G
Sbjct: 342 GERGRLGPQ----GAPGQRGAHGMPGKPGPMGPLGIPGSSG-FPGNPGMKGEAGPTGARG 396
Query: 157 RRG--GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGME 209
G G+ P P P P P + P+ G G GP S G +
Sbjct: 397 PEGPQGQRGETGP-PGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQ 455
Query: 210 --TQKEAFDGQGGRSPLPLPPSTAGP 233
T + GQ G +P AGP
Sbjct: 456 GSTGPQGIRGQPGDPGVPGFKGEAGP 481
Score = 35.4 bits (80), Expect = 0.044
Identities = 42/155 (27%), Positives = 57/155 (36%), Gaps = 28/155 (18%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAA--DGSPHVSTSPTP 153
P S+G G P P P G PG +G G G+ G A GS +P P
Sbjct: 1036 PPGSNGPVGEPGPEG-----PAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGP 1090
Query: 154 --APGRRG--GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--------GQRG 201
APG G G P+ P + R P + P +G GQ+G
Sbjct: 1091 VGAPGDAGQRGDPGSRGPIGPPG-------RAGKRGLPGPQGPRGDKGDHGDRGDRGQKG 1143
Query: 202 PAHSTGME--TQKEAFDGQGGRSPLPLPPSTAGPP 234
TG++ +G+ G + +P P GPP
Sbjct: 1144 HRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPP 1178
Score = 34.3 bits (77), Expect = 0.097
Identities = 50/177 (28%), Positives = 62/177 (35%), Gaps = 27/177 (15%)
Query: 82 GRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAA 141
G V + GI P P G G+ PR R P+G P G +G G PG+ G A
Sbjct: 119 GLVPVVTGIRGRPGPA---GPPGSQGPRGER--GPKGRPGPRGPQGIDGEPGVPGQPG-A 172
Query: 142 DGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEP-AERRPSLLQG--- 197
G P + P P G A++ + S + P R P LQG
Sbjct: 173 PGPPGHPSHPGP-DGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQG 231
Query: 198 --------------GQRGPAHSTGME--TQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G GP S G E K DG+ GR+ P AG P G
Sbjct: 232 GAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARG 288
Score = 33.1 bits (74), Expect = 0.22
Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 31/151 (20%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAP-GRRG 159
G AG P + G+P G S PG+ G G PGE G A TP P G RG
Sbjct: 732 GMAGGHGPDGPK-GSP-GPSGTPGDTGPPGLQGMPGERGIAG---------TPGPKGDRG 780
Query: 160 GREAR----------LRPMPTPSWIPVSSHKKAARSEPAER--------RPSLLQGGQRG 201
G + R +P P P + + EP R R + G+ G
Sbjct: 781 GIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENG 840
Query: 202 PAHSTGMETQKEAFDGQGGRSPLPLPPSTAG 232
P + G + DGQ G P P G
Sbjct: 841 PTGAVGF-AGPQGPDGQPGVKGEPGEPGQKG 870
Score = 31.6 bits (70), Expect = 0.63
Identities = 44/141 (31%), Positives = 52/141 (36%), Gaps = 32/141 (22%)
Query: 101 GEAGTPAPRAARLGA-----PRGASPPPGEEGRAGAWRSPGEAGAA--DGSPHVSTSPTP 153
G AGTP + GA P G PPG G G PG G A DG+P
Sbjct: 1011 GPAGTPG-KVGPTGATGDKGPPGPVGPPGSNGPVG---EPGPEGPAGNDGTP----GRDG 1062
Query: 154 APGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQ 211
A G RG R P P+ +P ++ P P G GQRG S G
Sbjct: 1063 AVGERGDRGD-----PGPAGLP------GSQGAPGTPGPVGAPGDAGQRGDPGSRG---- 1107
Query: 212 KEAFDGQGGRSPLPLPPSTAG 232
G+ G+ LP P G
Sbjct: 1108 PIGPPGRAGKRGLPGPQGPRG 1128
Score = 30.8 bits (68), Expect = 1.1
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAP--------RGASPPPGEEGRAGAWRSPGEAGAADG-- 143
P PV G+ G P P +G P G PPGE G G PG AA G
Sbjct: 1178 PGPVGPSGKEGNPGPLGP-IGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDI 1236
Query: 144 -SPHVSTSPTPAP 155
+ + P P P
Sbjct: 1237 MGHYDESMPDPLP 1249
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 14/78 (17%)
Query: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPH 146
L G+ P P G AG P P R PPG G +G +PG G G P
Sbjct: 1150 LQGLPGPPGPNGEQGSAGIPGPFGPR--------GPPGPVGPSGKEGNPGPLGPI-GPPG 1200
Query: 147 VSTS-----PTPAPGRRG 159
V S P PG G
Sbjct: 1201 VRGSVGEAGPEGPPGEPG 1218
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 51.2 bits (121), Expect = 8e-07
Identities = 50/155 (32%), Positives = 60/155 (38%), Gaps = 31/155 (20%)
Query: 93 DPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAA--DGSPHVSTS 150
DP GE G P G P G+S P G+EG+ G PGE G A +G+P
Sbjct: 363 DPGAFGLKGEKGEPGADG-EAGRP-GSSGPSGDEGQPGEPGPPGEKGEAGDEGNP----G 416
Query: 151 PTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----------GQ 199
P APG RGG R P TP + R +P E P QG G+
Sbjct: 417 PDGAPGERGGPGER-GPRGTPG-------TRGPRGDPGEAGPQGDQGREGPVGVPGDPGE 468
Query: 200 RGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPP 234
GP G + +G R P AGPP
Sbjct: 469 AGPIGPKGYRGDEGPPGSEGARG----APGPAGPP 499
Score = 39.3 bits (90), Expect = 0.003
Identities = 47/148 (31%), Positives = 56/148 (37%), Gaps = 26/148 (17%)
Query: 101 GEAGTPAPRAARLGAPR--GASPPPGEEGRAGAWRSPGEAG--AADGSPHVSTSPTPA-- 154
GE G P + G+P G PPG +G GA+ GE G ADG S P+
Sbjct: 335 GEMGYPGLPGCK-GSPGFDGIQGPPGPKGDPGAFGLKGEKGEPGADGEAGRPGSSGPSGD 393
Query: 155 ---------PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHS 205
PG +G EA P P P R P ER P G RGP
Sbjct: 394 EGQPGEPGPPGEKG--EAGDEGNPGPDGAP------GERGGPGERGPRGTP-GTRGPRGD 444
Query: 206 TGMETQKEAFDGQGGRSPLPLPPSTAGP 233
G E + G+ G +P P AGP
Sbjct: 445 PG-EAGPQGDQGREGPVGVPGDPGEAGP 471
Score = 29.6 bits (65), Expect = 2.4
Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 27/123 (21%)
Query: 116 PRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIP 175
P G PG EG G PGE G A G P GR L P+
Sbjct: 258 PPGLRGDPGFEGERGKPGLPGEKGEA-GDP--------------GRPGDLGPVGYQG--- 299
Query: 176 VSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPP 235
+K +R E R P G +G G+ + DG G P P G P
Sbjct: 300 -MKGEKGSRGEKGSRGPK----GYKGEKGKRGI----DGVDGVKGEMGYPGLPGCKGSPG 350
Query: 236 LEG 238
+G
Sbjct: 351 FDG 353
Score = 28.9 bits (63), Expect = 4.1
Identities = 40/142 (28%), Positives = 47/142 (33%), Gaps = 25/142 (17%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
GEAG P+ R G PPG EG GA PG AG P PG G
Sbjct: 467 GEAGPIGPKGYR-----GDEGPPGSEGARGA---PGPAG-----------PPGDPGLMGE 507
Query: 161 R----EARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFD 216
R A P + ++ A + P L G G A G + A
Sbjct: 508 RGEDGPAGNGTEGFPGFPGYPGNRGAPGINGTKGYPGL--KGDEGEAGDPGDDNNDIAPR 565
Query: 217 GQGGRSPLPLPPSTAGPPPLEG 238
G G P GPP +G
Sbjct: 566 GVKGAKGYRGPEGPQGPPGHQG 587
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 50.4 bits (119), Expect = 1e-06
Identities = 54/177 (30%), Positives = 65/177 (36%), Gaps = 25/177 (14%)
Query: 80 GAGRVVRLAGIWRDPAPV----MSHGEAGTP-------APRAARLGAPR---GASP--PP 123
G + + LAG PAP H E G P+ G+P G SP P
Sbjct: 474 GGAQTLALAG---SPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPSETPGPSPAGPA 530
Query: 124 GEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAA 183
G+E +PG A + SP+ PG R A P +PS P S
Sbjct: 531 GDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPT 590
Query: 184 RSEPAERRPSLLQGGQ-RGPAHSTGMETQKEAFD----GQGGRSPLPLPPSTAGPPP 235
R EPAE PS G + GPA E+ E G G P P T GP P
Sbjct: 591 RDEPAE-SPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSP 646
Score = 34.7 bits (78), Expect = 0.075
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTP 153
P P + PA + P A P E + + +PG A + SP+
Sbjct: 562 PGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPS-ETPGPRPAGPAGDEPAESPSE 620
Query: 154 APGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAE 189
PG R A P +PS P S R EPA+
Sbjct: 621 TPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAK 656
Score = 27.7 bits (60), Expect = 9.1
Identities = 22/79 (27%), Positives = 27/79 (34%), Gaps = 17/79 (21%)
Query: 159 GGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQ 218
G + L P PS P + H + E E G+ GP KE G
Sbjct: 475 GAQTLALAGSPAPSGHPKAGHSENGVEEDTE--------GRTGP---------KEGTPGS 517
Query: 219 GGRSPLPLPPSTAGPPPLE 237
+P P P AG P E
Sbjct: 518 PSETPGPSPAGPAGDEPAE 536
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 50.4 bits (119), Expect = 1e-06
Identities = 48/161 (29%), Positives = 65/161 (40%), Gaps = 25/161 (15%)
Query: 94 PAPVMSHGEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAGAA-----DGSP-H 146
P G+ G+P R + + P+GA+ PPG G+ G +PG G+A GSP H
Sbjct: 273 PGRAGEKGDEGSPGIRGPQGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGH 332
Query: 147 VSTSPTPA-PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-------- 197
+ P PG +GG + P P +P S EP R QG
Sbjct: 333 QGLAGVPGQPGTKGGPGD--QGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQ 390
Query: 198 GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+RGP G + ++ QG PP GP L G
Sbjct: 391 GERGPVGQPGPQGRQGPKGEQG-------PPGIPGPQGLPG 424
Score = 40.0 bits (92), Expect = 0.002
Identities = 44/166 (26%), Positives = 57/166 (34%), Gaps = 33/166 (19%)
Query: 101 GEAGTPAPRAARLGAPR-----GASPPPGEEGRAGAWRSPGEAG--AADGSPHVS--TSP 151
GE G P P G P G + PPG+ G G PG+AG DG P + T
Sbjct: 30 GERGPPGPPGPP-GVPGSDGIDGDNGPPGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGA 88
Query: 152 TPAPGRRGGREARLRP------------------MPTPSWIPVSSHKKAARSEPAERRPS 193
PG G + +P P P +P + + +P PS
Sbjct: 89 KGEPGPMGIPGVKGQPGLPGPPGLPGPGFAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPS 148
Query: 194 LLQGGQRGPAHSTGMETQKEAFDGQGG-RSPLPLPPSTAGPPPLEG 238
G GP G + +G P PP GPP L+G
Sbjct: 149 ----GPPGPPGKPGRPGTIQGLEGSADFLCPTNCPPGMKGPPGLQG 190
Score = 33.5 bits (75), Expect = 0.17
Identities = 50/159 (31%), Positives = 59/159 (37%), Gaps = 29/159 (18%)
Query: 89 GIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--AADGSPH 146
GI P GE G P +GA GA+ PPGEEG G PG AG +GSP
Sbjct: 232 GIRGYPGMAGPKGETG-PHGYKGMVGAI-GATGPPGEEGPRG---PPGRAGEKGDEGSPG 286
Query: 147 VS-----TSPTPAPGRRG--GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQ 199
+ T P A G G G++ TP P +P G
Sbjct: 287 IRGPQGITGPKGATGPPGINGKDG------TPG-TPGMKGSAGQAGQPG-------SPGH 332
Query: 200 RGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+G A G K QG P L P +GPP EG
Sbjct: 333 QGLAGVPGQPGTKGGPGDQGEPGPQGL-PGFSGPPGKEG 370
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAAD--GSPHVSTSPTPAPGRR 158
G AG P + + G S PG +G+ G PG G + G+P V P P PG R
Sbjct: 445 GVAGLPGEKGEK-----GESGEPGPKGQQGVRGEPGYPGPSGDAGAPGVQGYPGP-PGPR 498
Query: 159 G 159
G
Sbjct: 499 G 499
Score = 29.6 bits (65), Expect = 2.4
Identities = 37/130 (28%), Positives = 43/130 (33%), Gaps = 25/130 (19%)
Query: 110 AARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHV----STSPTPAPGRRG--GREA 163
A + P G PPG G+ G PG G V +T P G +G G
Sbjct: 551 AVGMMGPPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRGEKGDPGEVG 610
Query: 164 RLRP-MPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRS 222
R P MP P IP RP G+ G S G G+ GR
Sbjct: 611 RGHPGMPGPPGIP-----------GLPGRPGQAINGKDGDRGSPGA-------PGEAGRP 652
Query: 223 PLPLPPSTAG 232
LP P G
Sbjct: 653 GLPGPVGLPG 662
Score = 29.3 bits (64), Expect = 3.1
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 101 GEAGTPAPRAARLGAP--RGASPPPGEEGRAGAWRSPGEAG 139
GE G P P + GAP +G PPG G AG PG+ G
Sbjct: 472 GEPGYPGP-SGDAGAPGVQGYPGPPGPRGLAGNRGVPGQPG 511
Score = 28.9 bits (63), Expect = 4.1
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAP 155
P G G P P+ L +G PG+ G G PG AG S P P
Sbjct: 407 PKGEQGPPGIPGPQG--LPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGP 464
Query: 156 -GRRGGREARLRPMPT 170
G++G R P P+
Sbjct: 465 KGQQGVRGEPGYPGPS 480
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 50.1 bits (118), Expect = 2e-06
Identities = 48/166 (28%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 101 GEAGTPAPRAAR-------LGAPRGASPPPGEEGRAGAWRSPGEAG--AADGSPHVSTSP 151
G G P P+ AR P+GA+ PG+ G G +PG G DG + P
Sbjct: 585 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP 644
Query: 152 TPA--PGRRGGREA----RLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-------- 197
PA G RG + A + +P P P K + P E L G
Sbjct: 645 GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 704
Query: 198 GQRGPAHSTGMETQK-----EAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+RG + G++ + DG G S PP GPP L+G
Sbjct: 705 GERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 750
Score = 47.0 bits (110), Expect = 1e-05
Identities = 52/150 (34%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA--ADGSPHVSTSP 151
P PV G G PA R G+P GA PPG +G AG GE GA A G+P SP
Sbjct: 1019 PGPVGPPGLTG-PAGEPGREGSP-GADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1076
Query: 152 TPA--PGRRGGR-EARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGM 208
PA G++G R EA + P S AR + P G +G A G
Sbjct: 1077 GPAGPTGKQGDRGEAGAQGPMGP------SGPAGARGIQGPQGPR----GDKGEAGEPG- 1125
Query: 209 ETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
E + G G LP PP +G G
Sbjct: 1126 ERGLKGHRGFTGLQGLPGPPGPSGDQGASG 1155
Score = 42.4 bits (98), Expect = 4e-04
Identities = 48/154 (31%), Positives = 58/154 (37%), Gaps = 21/154 (13%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAAD--------GSPHV 147
P GE G P P + G P G PPGE G+ G PGEAGA G P
Sbjct: 649 PAGERGEQGAPGPSGFQ-GLP-GPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE 706
Query: 148 STSPTPAPGRRGGREARLRP-------MPTPSWIPVSSHKKAARSEPAERRPSLLQG--G 198
SP A G +G R P P+ P + + P ER + + G G
Sbjct: 707 RGSP-GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKG 765
Query: 199 QRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAG 232
RG G E G+G P+ PP AG
Sbjct: 766 DRGDVGEKGPEGAPGKDGGRGLTGPIG-PPGPAG 798
Score = 42.4 bits (98), Expect = 4e-04
Identities = 41/141 (29%), Positives = 51/141 (36%), Gaps = 20/141 (14%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG-AADGSPHVSTSPTPAPGRRG 159
G G P P A +G PPG G AGA +PGE G P P A G+ G
Sbjct: 789 GPIGPPGPAGAN--GEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPG 846
Query: 160 GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQG 219
+ + + +K P + PS G GP TG+ K A QG
Sbjct: 847 AKGEQ-----------GEAGQKGDAGAPGPQGPS----GAPGPQGPTGVTGPKGARGAQG 891
Query: 220 --GRSPLPLPPSTAGPPPLEG 238
G + P GPP G
Sbjct: 892 PPGATGFPGAAGRVGPPGSNG 912
Score = 42.0 bits (97), Expect = 5e-04
Identities = 40/133 (30%), Positives = 46/133 (34%), Gaps = 29/133 (21%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
G G P P P+GA P GEEG+ GA PG G P PG RG
Sbjct: 468 GPKGEPGP-----AGPQGAPGPAGEEGKRGARGEPGGVG-----------PIGPPGERGA 511
Query: 161 REARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGG 220
P P + P ER PS G GP + G + + G G
Sbjct: 512 --------PGNRGFPGQDGLAGPKGAPGERGPS----GLAGPKGANG-DPGRPGEPGLPG 558
Query: 221 RSPLPLPPSTAGP 233
L P AGP
Sbjct: 559 ARGLTGRPGDAGP 571
Score = 41.2 bits (95), Expect = 8e-04
Identities = 47/158 (29%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 94 PAPVMSHGEAGTPA-PRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--------AADGS 144
P P G G P P + PRG PPG+ G G PG+AG A G
Sbjct: 218 PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGF 277
Query: 145 PHVSTSPTPAPGRRG--GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQR 200
P P G RG G + P + S P P L G G+
Sbjct: 278 PGTPGLP-GVKGHRGYPGLDGAKGEAGAPG-VKGESGSPGENGSPGPMGPRGLPGERGRT 335
Query: 201 GPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
GPA + G DGQ G + P P AG P G
Sbjct: 336 GPAGAAGARGN----DGQPGPAGPPGPVGPAGGPGFPG 369
Score = 40.8 bits (94), Expect = 0.001
Identities = 46/144 (31%), Positives = 52/144 (36%), Gaps = 20/144 (13%)
Query: 94 PAPVMSHGEAGTP-APRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPT 152
P PV G G P AP A P GA P G +G G +PG G A S + T
Sbjct: 356 PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD-- 413
Query: 153 PAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMET 210
PG +G A P + P P R P QG G GP TG E
Sbjct: 414 GIPGAKGSAGA-----PGIAGAP---------GFPGPRGPPGPQGATGPLGPKGQTG-EP 458
Query: 211 QKEAFDGQGGRSPLPLPPSTAGPP 234
F G+ G P P G P
Sbjct: 459 GIAGFKGEQGPKGEPGPAGPQGAP 482
Score = 40.4 bits (93), Expect = 0.001
Identities = 45/133 (33%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPP-----PGEEGRAGAWRSPGEAGAADGSPHVSTS 150
P + G++G P RA G A PP PG++G +GA PG G A V
Sbjct: 928 PKGARGDSGPPG-RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVG-- 984
Query: 151 PTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGM 208
PG+RG E +P PS P K+ A +R P G G GPA G
Sbjct: 985 ---LPGQRG--ERGFPGLPGPSGEP---GKQGAPGASGDRGPPGPVGPPGLTGPAGEPGR 1036
Query: 209 ETQKEAFDGQGGR 221
E A DG GR
Sbjct: 1037 EGSPGA-DGPPGR 1048
Score = 40.0 bits (92), Expect = 0.002
Identities = 48/153 (31%), Positives = 58/153 (37%), Gaps = 23/153 (15%)
Query: 101 GEAGTPAPRAARLGAPRGASPP--------PGEEGRAGAWRSPGEAGAADGSPHVSTSPT 152
GE G P R G P A P PGE+GR G PG GA G P V P
Sbjct: 552 GEPGLPGARGLT-GRPGDAGPQGKVGPSGAPGEDGRPG---PPGPQGAR-GQPGVMGFPG 606
Query: 153 P-----APGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHS 205
P PG+ G E L P +P + A P P+ +G G GP+
Sbjct: 607 PKGANGEPGKAG--EKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGF 664
Query: 206 TGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+ G+GG+ P AG P L G
Sbjct: 665 QGLPGPPGP-PGEGGKPGDQGVPGEAGAPGLVG 696
Score = 36.6 bits (83), Expect = 0.020
Identities = 45/151 (29%), Positives = 57/151 (37%), Gaps = 31/151 (20%)
Query: 101 GEAGTPAPRAARLGA--PRGASP---------PPGEEGRAGAWRSPGEAGAADGSPHVST 149
G G P+ AR GA P GA+ PPG G G PG +G DG P +
Sbjct: 876 GPTGVTGPKGAR-GAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG-KDG-PKGAR 932
Query: 150 SPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGME 209
+ PGR G E L+ P + EP + PS G GP G+
Sbjct: 933 GDSGPPGRAG--EPGLQGPAGP---------PGEKGEPGDDGPS----GAEGPPGPQGLA 977
Query: 210 TQK--EAFDGQGGRSPLPLPPSTAGPPPLEG 238
Q+ GQ G P P +G P +G
Sbjct: 978 GQRGIVGLPGQRGERGFPGLPGPSGEPGKQG 1008
Score = 34.7 bits (78), Expect = 0.075
Identities = 37/142 (26%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
G G P R A G + P G+ G G G G G P P G
Sbjct: 747 GLQGMPGERGAA-----GIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 801
Query: 161 REARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQK--EAFD 216
+ + P P + AR P ER + G G GP + G K +
Sbjct: 802 EKGEVGP-------PGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEA 854
Query: 217 GQGGRSPLPLPPSTAGPPPLEG 238
GQ G + P P +G P +G
Sbjct: 855 GQKGDAGAPGPQGPSGAPGPQG 876
Score = 32.0 bits (71), Expect = 0.48
Identities = 37/137 (27%), Positives = 40/137 (29%), Gaps = 14/137 (10%)
Query: 101 GEAGTPAPRAARLGA-PRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRG 159
GEAG P A RG P G G G PGE G P P
Sbjct: 1089 GEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPS 1148
Query: 160 GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQKEAFDG 217
G + P + R P PS G G GP G + G
Sbjct: 1149 GDQGASGP----------AGPSGPRGPPGPVGPSGKDGANGIPGPIGPPG-PRGRSGETG 1197
Query: 218 QGGRSPLPLPPSTAGPP 234
G P PP GPP
Sbjct: 1198 PAGPPGNPGPPGPPGPP 1214
Score = 30.8 bits (68), Expect = 1.1
Identities = 40/153 (26%), Positives = 51/153 (33%), Gaps = 27/153 (17%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA-----ADGSPHVS 148
P P GE G G P G P GE+G G GE GA DG P
Sbjct: 100 PGPKGQKGEPGDIKDIVGPKGPP-GPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTP 158
Query: 149 TSPTP--------APGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQR 200
+P P PG G A++ +KA ++ + + G R
Sbjct: 159 GNPGPPGPPGPPGPPGLGGNFAAQMAG---------GFDEKAGGAQLGVMQGPMGPMGPR 209
Query: 201 GPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGP 233
GP G + F G G P P +GP
Sbjct: 210 GPPGPAG-APGPQGFQGNPGE---PGEPGVSGP 238
Score = 30.8 bits (68), Expect = 1.1
Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 10/110 (9%)
Query: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPH 146
L G+ P P G +G P PRG P G G+ GA PG G P
Sbjct: 1138 LQGLPGPPGPSGDQGASGPAGP-----SGPRGPPGPVGPSGKDGANGIPGPIGPP--GPR 1190
Query: 147 VSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQ 196
+ T G G P P I +S+ A P E+ P LQ
Sbjct: 1191 GRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAF---AGLGPREKGPDPLQ 1237
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 50.1 bits (118), Expect = 2e-06
Identities = 48/166 (28%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 101 GEAGTPAPRAAR-------LGAPRGASPPPGEEGRAGAWRSPGEAG--AADGSPHVSTSP 151
G G P P+ AR P+GA+ PG+ G G +PG G DG + P
Sbjct: 516 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP 575
Query: 152 TPA--PGRRGGREA----RLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-------- 197
PA G RG + A + +P P P K + P E L G
Sbjct: 576 GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 635
Query: 198 GQRGPAHSTGMETQK-----EAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+RG + G++ + DG G S PP GPP L+G
Sbjct: 636 GERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 681
Score = 47.0 bits (110), Expect = 1e-05
Identities = 52/150 (34%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA--ADGSPHVSTSP 151
P PV G G PA R G+P GA PPG +G AG GE GA A G+P SP
Sbjct: 950 PGPVGPPGLTG-PAGEPGREGSP-GADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1007
Query: 152 TPA--PGRRGGR-EARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGM 208
PA G++G R EA + P S AR + P G +G A G
Sbjct: 1008 GPAGPTGKQGDRGEAGAQGPMGP------SGPAGARGIQGPQGPR----GDKGEAGEPG- 1056
Query: 209 ETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
E + G G LP PP +G G
Sbjct: 1057 ERGLKGHRGFTGLQGLPGPPGPSGDQGASG 1086
Score = 42.4 bits (98), Expect = 4e-04
Identities = 48/154 (31%), Positives = 58/154 (37%), Gaps = 21/154 (13%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAAD--------GSPHV 147
P GE G P P + G P G PPGE G+ G PGEAGA G P
Sbjct: 580 PAGERGEQGAPGPSGFQ-GLP-GPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE 637
Query: 148 STSPTPAPGRRGGREARLRP-------MPTPSWIPVSSHKKAARSEPAERRPSLLQG--G 198
SP A G +G R P P+ P + + P ER + + G G
Sbjct: 638 RGSP-GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKG 696
Query: 199 QRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAG 232
RG G E G+G P+ PP AG
Sbjct: 697 DRGDVGEKGPEGAPGKDGGRGLTGPIG-PPGPAG 729
Score = 42.4 bits (98), Expect = 4e-04
Identities = 41/141 (29%), Positives = 51/141 (36%), Gaps = 20/141 (14%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG-AADGSPHVSTSPTPAPGRRG 159
G G P P A +G PPG G AGA +PGE G P P A G+ G
Sbjct: 720 GPIGPPGPAGAN--GEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPG 777
Query: 160 GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQG 219
+ + + +K P + PS G GP TG+ K A QG
Sbjct: 778 AKGEQ-----------GEAGQKGDAGAPGPQGPS----GAPGPQGPTGVTGPKGARGAQG 822
Query: 220 --GRSPLPLPPSTAGPPPLEG 238
G + P GPP G
Sbjct: 823 PPGATGFPGAAGRVGPPGSNG 843
Score = 42.0 bits (97), Expect = 5e-04
Identities = 40/133 (30%), Positives = 46/133 (34%), Gaps = 29/133 (21%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
G G P P P+GA P GEEG+ GA PG G P PG RG
Sbjct: 399 GPKGEPGP-----AGPQGAPGPAGEEGKRGARGEPGGVG-----------PIGPPGERGA 442
Query: 161 REARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGG 220
P P + P ER PS G GP + G + + G G
Sbjct: 443 --------PGNRGFPGQDGLAGPKGAPGERGPS----GLAGPKGANG-DPGRPGEPGLPG 489
Query: 221 RSPLPLPPSTAGP 233
L P AGP
Sbjct: 490 ARGLTGRPGDAGP 502
Score = 41.2 bits (95), Expect = 8e-04
Identities = 47/158 (29%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 94 PAPVMSHGEAGTPA-PRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--------AADGS 144
P P G G P P + PRG PPG+ G G PG+AG A G
Sbjct: 149 PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGF 208
Query: 145 PHVSTSPTPAPGRRG--GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQR 200
P P G RG G + P + S P P L G G+
Sbjct: 209 PGTPGLP-GVKGHRGYPGLDGAKGEAGAPG-VKGESGSPGENGSPGPMGPRGLPGERGRT 266
Query: 201 GPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
GPA + G DGQ G + P P AG P G
Sbjct: 267 GPAGAAGARGN----DGQPGPAGPPGPVGPAGGPGFPG 300
Score = 40.8 bits (94), Expect = 0.001
Identities = 46/144 (31%), Positives = 52/144 (36%), Gaps = 20/144 (13%)
Query: 94 PAPVMSHGEAGTP-APRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPT 152
P PV G G P AP A P GA P G +G G +PG G A S + T
Sbjct: 287 PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD-- 344
Query: 153 PAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMET 210
PG +G A P + P P R P QG G GP TG E
Sbjct: 345 GIPGAKGSAGA-----PGIAGAP---------GFPGPRGPPGPQGATGPLGPKGQTG-EP 389
Query: 211 QKEAFDGQGGRSPLPLPPSTAGPP 234
F G+ G P P G P
Sbjct: 390 GIAGFKGEQGPKGEPGPAGPQGAP 413
Score = 40.4 bits (93), Expect = 0.001
Identities = 45/133 (33%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPP-----PGEEGRAGAWRSPGEAGAADGSPHVSTS 150
P + G++G P RA G A PP PG++G +GA PG G A V
Sbjct: 859 PKGARGDSGPPG-RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVG-- 915
Query: 151 PTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGM 208
PG+RG E +P PS P K+ A +R P G G GPA G
Sbjct: 916 ---LPGQRG--ERGFPGLPGPSGEP---GKQGAPGASGDRGPPGPVGPPGLTGPAGEPGR 967
Query: 209 ETQKEAFDGQGGR 221
E A DG GR
Sbjct: 968 EGSPGA-DGPPGR 979
Score = 40.0 bits (92), Expect = 0.002
Identities = 48/153 (31%), Positives = 58/153 (37%), Gaps = 23/153 (15%)
Query: 101 GEAGTPAPRAARLGAPRGASPP--------PGEEGRAGAWRSPGEAGAADGSPHVSTSPT 152
GE G P R G P A P PGE+GR G PG GA G P V P
Sbjct: 483 GEPGLPGARGLT-GRPGDAGPQGKVGPSGAPGEDGRPG---PPGPQGAR-GQPGVMGFPG 537
Query: 153 P-----APGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHS 205
P PG+ G E L P +P + A P P+ +G G GP+
Sbjct: 538 PKGANGEPGKAG--EKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGF 595
Query: 206 TGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+ G+GG+ P AG P L G
Sbjct: 596 QGLPGPPGP-PGEGGKPGDQGVPGEAGAPGLVG 627
Score = 36.6 bits (83), Expect = 0.020
Identities = 45/151 (29%), Positives = 57/151 (37%), Gaps = 31/151 (20%)
Query: 101 GEAGTPAPRAARLGA--PRGASP---------PPGEEGRAGAWRSPGEAGAADGSPHVST 149
G G P+ AR GA P GA+ PPG G G PG +G DG P +
Sbjct: 807 GPTGVTGPKGAR-GAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG-KDG-PKGAR 863
Query: 150 SPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGME 209
+ PGR G E L+ P + EP + PS G GP G+
Sbjct: 864 GDSGPPGRAG--EPGLQGPAGP---------PGEKGEPGDDGPS----GAEGPPGPQGLA 908
Query: 210 TQK--EAFDGQGGRSPLPLPPSTAGPPPLEG 238
Q+ GQ G P P +G P +G
Sbjct: 909 GQRGIVGLPGQRGERGFPGLPGPSGEPGKQG 939
Score = 34.7 bits (78), Expect = 0.075
Identities = 37/142 (26%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
G G P R A G + P G+ G G G G G P P G
Sbjct: 678 GLQGMPGERGAA-----GIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 732
Query: 161 REARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQK--EAFD 216
+ + P P + AR P ER + G G GP + G K +
Sbjct: 733 EKGEVGP-------PGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEA 785
Query: 217 GQGGRSPLPLPPSTAGPPPLEG 238
GQ G + P P +G P +G
Sbjct: 786 GQKGDAGAPGPQGPSGAPGPQG 807
Score = 32.7 bits (73), Expect = 0.28
Identities = 41/155 (26%), Positives = 52/155 (33%), Gaps = 27/155 (17%)
Query: 92 RDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA-----ADGSPH 146
R P P GE G G P G P GE+G G GE GA DG P
Sbjct: 29 RQPGPKGQKGEPGDIKDIVGPKGPP-GPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPG 87
Query: 147 VSTSPTP--------APGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGG 198
+P P PG G A++ +KA ++ + + G
Sbjct: 88 TPGNPGPPGPPGPPGPPGLGGNFAAQMAG---------GFDEKAGGAQLGVMQGPMGPMG 138
Query: 199 QRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGP 233
RGP G + F G G P P +GP
Sbjct: 139 PRGPPGPAG-APGPQGFQGNPGE---PGEPGVSGP 169
Score = 32.0 bits (71), Expect = 0.48
Identities = 37/137 (27%), Positives = 40/137 (29%), Gaps = 14/137 (10%)
Query: 101 GEAGTPAPRAARLGA-PRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRG 159
GEAG P A RG P G G G PGE G P P
Sbjct: 1020 GEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPS 1079
Query: 160 GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQKEAFDG 217
G + P + R P PS G G GP G + G
Sbjct: 1080 GDQGASGP----------AGPSGPRGPPGPVGPSGKDGANGIPGPIGPPG-PRGRSGETG 1128
Query: 218 QGGRSPLPLPPSTAGPP 234
G P PP GPP
Sbjct: 1129 PAGPPGNPGPPGPPGPP 1145
Score = 30.8 bits (68), Expect = 1.1
Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 10/110 (9%)
Query: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPH 146
L G+ P P G +G P PRG P G G+ GA PG G P
Sbjct: 1069 LQGLPGPPGPSGDQGASGPAGP-----SGPRGPPGPVGPSGKDGANGIPGPIGPP--GPR 1121
Query: 147 VSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQ 196
+ T G G P P I +S+ A P E+ P LQ
Sbjct: 1122 GRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAF---AGLGPREKGPDPLQ 1168
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 50.1 bits (118), Expect = 2e-06
Identities = 50/166 (30%), Positives = 64/166 (38%), Gaps = 23/166 (13%)
Query: 78 SLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGE 137
S G G + G W P P G+AG+ P R P G PPG GRAGA +PGE
Sbjct: 188 SPGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGMR--GPPGPQGPPGSPGRAGAVGTPGE 245
Query: 138 AGAADGSPHVSTSPTPAPGRRGGREARLR----PMPTPSWIPVSSH-KKAARSEPAERRP 192
G G P P P P G AR+ P+ + ++ ++H + P P
Sbjct: 246 RG-PPGPPGPPGPPGP-PAPVGPPHARISQHGDPLLSNTFTETNNHWPQGPTGPPGPPGP 303
Query: 193 SLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G GP TG+ G G PP GP + G
Sbjct: 304 M----GPPGPPGPTGV-------PGSPGHIG---PPGPTGPKGISG 335
Score = 34.3 bits (77), Expect = 0.097
Identities = 44/154 (28%), Positives = 50/154 (32%), Gaps = 39/154 (25%)
Query: 106 PAPRAARLGAPRGASPP----PGEEG---RAGAWRSPGEAGAADGSPHVSTSPTPAPGRR 158
P P AP PP PG+ G + GAW PG G P G R
Sbjct: 168 PTPATPEDPAPLWGPPPAQGSPGDGGLQDQVGAWGLPGPTG-----------PKGDAGSR 216
Query: 159 GGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQKEAFD 216
G +R P P P S + A P ER P G G GP G + +
Sbjct: 217 G--PMGMRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQH 274
Query: 217 G----------------QGGRSPLPLPPSTAGPP 234
G QG P P PP GPP
Sbjct: 275 GDPLLSNTFTETNNHWPQGPTGP-PGPPGPMGPP 307
Score = 31.6 bits (70), Expect = 0.63
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 99 SHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAAD--GSPHVSTSPTPAPG 156
S G G P P P+G S PGE+G G PG G+A G P P PG
Sbjct: 318 SPGHIGPPGPTG-----PKGISGHPGEKGERGLRGEPGPQGSAGQRGEP----GPKGDPG 368
Query: 157 RR 158
+
Sbjct: 369 EK 370
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 48.5 bits (114), Expect = 5e-06
Identities = 50/156 (32%), Positives = 56/156 (35%), Gaps = 25/156 (16%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHV-----STS 150
P + GE G P P P G + PPGE GR GA + G G DGSP T
Sbjct: 987 PSGASGERGPPGPMG-----PPGLAGPPGESGREGAPGAEGSPG-RDGSPGAKGDRGETG 1040
Query: 151 PTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMET 210
P PG G A P P P + PA + G RGPA G
Sbjct: 1041 PAGPPGAPGAPGA---PGPVG---PAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094
Query: 211 QKEAFDGQGGR--------SPLPLPPSTAGPPPLEG 238
K QG R S L PP G P +G
Sbjct: 1095 DKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG 1130
Score = 48.1 bits (113), Expect = 7e-06
Identities = 51/173 (29%), Positives = 65/173 (37%), Gaps = 28/173 (16%)
Query: 94 PAPVMSHGEAGTPAPRAARLGA-------PRGASPPPGEEGRAGAWRSPGEAGAA--DGS 144
P P G G P P AR A P+GA+ PG+ G G PG G A DG
Sbjct: 556 PGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGE 615
Query: 145 PHVSTSPTPA--PGRRGGREARLRP----MPTPSWIPVSSHKKAARSEPAE---RRPSLL 195
P PA G RG + P +P P+ P + K + P + PS
Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGA 675
Query: 196 QG--------GQRGPAHSTGMETQKEA--FDGQGGRSPLPLPPSTAGPPPLEG 238
+G G +GP G A DG G + P P + G P L+G
Sbjct: 676 RGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQG 728
Score = 45.8 bits (107), Expect = 3e-05
Identities = 42/135 (31%), Positives = 48/135 (35%), Gaps = 40/135 (29%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA-ADGSPHVSTSPTPAPGRRG 159
G+ G P P P G + PPG +G+ GA PG+AGA D P P PG G
Sbjct: 800 GDRGEPGPPG-----PAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIG 854
Query: 160 GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQG 219
A K AR G GP +TG F G
Sbjct: 855 NVGA--------------PGAKGAR-------------GSAGPPGATG-------FPGAA 880
Query: 220 GRSPLPLPPSTAGPP 234
GR P P AGPP
Sbjct: 881 GRVGPPGPSGNAGPP 895
Score = 45.4 bits (106), Expect = 4e-05
Identities = 54/161 (33%), Positives = 62/161 (38%), Gaps = 29/161 (18%)
Query: 87 LAGIWRDPAPVMSHGEAGTPAPRAA--RLGAPRGASPPPGEEGRAGAWRSPGEAGAA--D 142
L G D P GE G+P A ++G PRG PGE GR GA PG AGA D
Sbjct: 273 LDGAKGDAGPAGPKGEPGSPGENGAPGQMG-PRGL---PGERGRPGA---PGPAGARGND 325
Query: 143 GS-----PHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG 197
G+ P T P PG G A + P S + R EP P+
Sbjct: 326 GATGAAGPPGPTGPAGPPGFPGAVGA--KGEAGPQGPRGSEGPQGVRGEPGPPGPA---- 379
Query: 198 GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G GPA + G DGQ G P AG P G
Sbjct: 380 GAAGPAGNPGA-------DGQPGAKGANGAPGIAGAPGFPG 413
Score = 45.1 bits (105), Expect = 6e-05
Identities = 44/150 (29%), Positives = 56/150 (37%), Gaps = 26/150 (17%)
Query: 89 GIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVS 148
G+ P G+ G P P A + G P G PPG G+AG PG GAA
Sbjct: 539 GLTGSPGSPGPDGKTGPPGP-AGQDGRP-GPPGPPGARGQAGVMGFPGPKGAAG------ 590
Query: 149 TSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGM 208
PG+ G R P P + P +A P + G++GPA S G
Sbjct: 591 -----EPGKAGERGV---PGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 642
Query: 209 ETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+ G G PP AG P +G
Sbjct: 643 ----QGLPGPAG------PPGEAGKPGEQG 662
Score = 43.5 bits (101), Expect = 2e-04
Identities = 51/172 (29%), Positives = 59/172 (34%), Gaps = 29/172 (16%)
Query: 88 AGIWRDPAPVMSHGEAGTPAPRAARLGA-PRGASP---------PPGEEGRAGAWRSPGE 137
AG P P+ G G P + AR A P GA+ PPG G AG PG
Sbjct: 844 AGPAGPPGPI---GNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGP 900
Query: 138 AGAADG-SPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQ 196
AG G P T P PG G P P+ S P P +
Sbjct: 901 AGKEGGKGPRGETGPAGRPGEVGPPGP-----PGPAGEKGSPGADGPAGAPGTPGPQGIA 955
Query: 197 G--------GQRGPAHSTGM--ETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G GQRG G+ + + G G S PP GPP L G
Sbjct: 956 GQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAG 1007
Score = 42.7 bits (99), Expect = 3e-04
Identities = 49/148 (33%), Positives = 57/148 (38%), Gaps = 22/148 (14%)
Query: 101 GEAGTPA-PRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--AADGSP---HVSTSPTPA 154
G AG P P A P+G PPG +G +G +PG G A G P V P PA
Sbjct: 404 GIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463
Query: 155 PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGM--ET 210
G G R AR P PT P R P R G G +GPA G
Sbjct: 464 -GEEGKRGARGEPGPTGLPGP-----PGERGGPGSRGFPGADGVAGPKGPAGERGSPGPA 517
Query: 211 QKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+ G+ GR P AG P +G
Sbjct: 518 GPKGSPGEAGR------PGEAGLPGAKG 539
Score = 40.4 bits (93), Expect = 0.001
Identities = 50/171 (29%), Positives = 59/171 (34%), Gaps = 31/171 (18%)
Query: 89 GIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA-------- 140
G+ P P G G P A+ A GA PG +G G PGE GA
Sbjct: 686 GVQGPPGPAGPRGANGAPGNDGAKGDA--GAPGAPGSQGAPGLQGMPGERGAAGLPGPKG 743
Query: 141 ---------ADGSPHVS-----TSPTPAPGRRGGREARLRPMPTPSWIPVSSH-KKAARS 185
ADGSP T P PG G + P+ P + R
Sbjct: 744 DRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRG 803
Query: 186 EPAERRPSLLQGGQRGPAHSTGMETQK-EAFD-GQGGRSPLPLPPSTAGPP 234
EP P+ G GP + G K E D G G + P P AGPP
Sbjct: 804 EPGPPGPA----GFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPP 850
Score = 39.3 bits (90), Expect = 0.003
Identities = 46/154 (29%), Positives = 56/154 (36%), Gaps = 24/154 (15%)
Query: 101 GEAGTPAPRAARLG-APRGASPPPGEEGRAGAWRSPGEAGA-ADGSPHVSTSPTPAPGRR 158
G G P P AR GA+ PPG G AG PG GA + P P + G +
Sbjct: 311 GRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQ---GPRGSEGPQ 367
Query: 159 GGREARLRPMPT----PSWIPVSSHKKAARSE------------PAERRPSLLQ--GGQR 200
G R P P P+ P + + A+ P R PS Q GG
Sbjct: 368 GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427
Query: 201 GPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPP 234
GP ++G E G G P P GPP
Sbjct: 428 GPKGNSG-EPGAPGSKGDTGAKGEPGPVGVQGPP 460
Score = 38.1 bits (87), Expect = 0.007
Identities = 44/158 (27%), Positives = 52/158 (32%), Gaps = 26/158 (16%)
Query: 89 GIWRDPAPVMSHG-----EAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADG 143
G+ + AP +S+G G P PRG PPG G G PGE G
Sbjct: 154 GLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGA 213
Query: 144 S-PHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQR 200
S P P PG+ G +P P ER P QG G
Sbjct: 214 SGPMGPRGPPGPPGKNGDDGEAGKP-----------------GRPGERGPPGPQGARGLP 256
Query: 201 GPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G A GM+ + F G G P G P G
Sbjct: 257 GTAGLPGMKGHR-GFSGLDGAKGDAGPAGPKGEPGSPG 293
Score = 38.1 bits (87), Expect = 0.007
Identities = 41/144 (28%), Positives = 50/144 (34%), Gaps = 20/144 (13%)
Query: 101 GEAGTPA----PRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPG 156
GE G P P A + P+G + G G AG SPGEAG PG
Sbjct: 485 GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAG--------RPGEAGLPG 536
Query: 157 RRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAF- 215
+G + P P P + R P G RG A G K A
Sbjct: 537 AKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPG------PPGARGQAGVMGFPGPKGAAG 590
Query: 216 -DGQGGRSPLPLPPSTAGPPPLEG 238
G+ G +P PP GP +G
Sbjct: 591 EPGKAGERGVPGPPGAVGPAGKDG 614
Score = 37.4 bits (85), Expect = 0.012
Identities = 44/155 (28%), Positives = 53/155 (34%), Gaps = 32/155 (20%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG-----------------AADG 143
G G PR PRG + PPG +G G PG G + G
Sbjct: 112 GPKGDTGPRG-----PRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYG 166
Query: 144 SPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPA 203
ST PG G + R +P P P + EP E S G RGP
Sbjct: 167 YDEKSTGGISVPGPMG--PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPM-GPRGPP 223
Query: 204 HSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G K DG+ G+ P P GPP +G
Sbjct: 224 GPPG----KNGDDGEAGK---PGRPGERGPPGPQG 251
Score = 32.0 bits (71), Expect = 0.48
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 88 AGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHV 147
+G+ P P S GE G P GAS P G G G+ +PG+ G +G P
Sbjct: 1114 SGLQGPPGPPGSPGEQG-----------PSGASGPAGPRGPPGSAGAPGKDG-LNGLP-- 1159
Query: 148 STSPTPAPGRRG 159
P PG RG
Sbjct: 1160 --GPIGPPGPRG 1169
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 47.0 bits (110), Expect = 1e-05
Identities = 40/129 (31%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 116 PRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPA-PGRRGGREARLRPMPTPSWI 174
PRG P G +GRAG PG +G A + P PGR+G + + P
Sbjct: 818 PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFP-----GF 872
Query: 175 PVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGME-----TQKEAFDGQGGRSPLPLPPS 229
P ++ +K AR + P GQRGP G T K G G P PP
Sbjct: 873 PGANGEKGARGVAGKPGPR----GQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPG 928
Query: 230 TAGPPPLEG 238
GP +G
Sbjct: 929 ERGPQGPQG 937
Score = 45.8 bits (107), Expect = 3e-05
Identities = 53/196 (27%), Positives = 65/196 (33%), Gaps = 44/196 (22%)
Query: 80 GAGRVVRLAGIWRDPAPVMSHGEAGTPAP--------RAARLGA--------------PR 117
G G VV G + P+ G G P P A + GA P
Sbjct: 976 GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPA 1035
Query: 118 GASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREAR----LRPMPTPSW 173
G PGE G GA +PG G P P +PG RG L P P
Sbjct: 1036 GLRGFPGERGLPGAQGAPGLKGGE--GPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQG 1093
Query: 174 IPVSSHKKAARSEPAERRPSLLQG--------GQRGPAHSTGMETQK--------EAFDG 217
P + +K A E + P+ G G GPA S G + K + G
Sbjct: 1094 PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKG 1153
Query: 218 QGGRSPLPLPPSTAGP 233
G + P PP GP
Sbjct: 1154 DKGENGPPGPPGLQGP 1169
Score = 45.4 bits (106), Expect = 4e-05
Identities = 47/167 (28%), Positives = 61/167 (36%), Gaps = 20/167 (11%)
Query: 82 GRVVRLAGIWRDPAPVMSHGEAGTPAPRA-ARLGAPRGASPPPGEEGRAGAWRSPGEAG- 139
G V + G+ P GEAG P P A +G P+G GE G GA PG G
Sbjct: 1255 GSVGSVGGVGEKGEP----GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1310
Query: 140 AADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-- 197
D P + P PG G P P+ K +P + P G
Sbjct: 1311 PGDDGPKGNPGPVGFPGDPGPPGE-----PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA 1365
Query: 198 ------GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+RGP + G E ++ G G + PP GP +G
Sbjct: 1366 GPPGPPGKRGPPGAAGAE-GRQGEKGAKGEAGAEGPPGKTGPVGPQG 1411
Score = 40.0 bits (92), Expect = 0.002
Identities = 45/164 (27%), Positives = 60/164 (36%), Gaps = 18/164 (10%)
Query: 85 VRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAA--D 142
+ L G+ P +G+ G P PRG P G +G G S G G
Sbjct: 1209 IGLQGLPGPPGEKGENGDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEK 1266
Query: 143 GSPHVSTSPTPAPGRRG-GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG---- 197
G P + +P P PG G G R + P ++ A+ P + P G
Sbjct: 1267 GEPGEAGNPGP-PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGF 1325
Query: 198 -------GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPP 234
G+ GPA G+ K DG G+ P P AGPP
Sbjct: 1326 PGDPGPPGEPGPAGQDGVGGDK-GEDGDPGQPGPPGPSGEAGPP 1368
Score = 39.7 bits (91), Expect = 0.002
Identities = 40/139 (28%), Positives = 52/139 (37%), Gaps = 18/139 (12%)
Query: 101 GEAGTPAPRAARLG--APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRR 158
G+ G P P +G P G + P GE G G PGE G + P P
Sbjct: 970 GKTGPPGPGGV-VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGI 1028
Query: 159 GGRE--ARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-GQRGPAHSTGMETQKEAF 215
G++ A LR P +P A+ P L G G +GP G ++ +
Sbjct: 1029 SGKDGPAGLRGFPGERGLP-----------GAQGAPGLKGGEGPQGPPGPVGSPGERGS- 1076
Query: 216 DGQGGRSPLPLPPSTAGPP 234
G G LP P GPP
Sbjct: 1077 AGTAGPIGLPGRPGPQGPP 1095
Score = 38.5 bits (88), Expect = 0.005
Identities = 46/163 (28%), Positives = 54/163 (33%), Gaps = 32/163 (19%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSP-- 151
P + GE+G P P+ PRG PPG G+ G PG ADG + P
Sbjct: 558 PGSSGAKGESGDPGPQG-----PRGVQGPPGPTGKPGKRGRPG----ADGGRGMPGEPGA 608
Query: 152 ---------TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG----- 197
PG +G R R P P R E E P L G
Sbjct: 609 KGDRGFDGLPGLPGDKGHRGER-----GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR 663
Query: 198 GQRGPAHSTGMETQ--KEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G GP + G Q DG G P GPP +G
Sbjct: 664 GLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQG 706
Score = 38.1 bits (87), Expect = 0.007
Identities = 43/165 (26%), Positives = 57/165 (34%), Gaps = 21/165 (12%)
Query: 94 PAPVMSHGEAGTPAPRAAR----------LGAPRGASPPPGEEGRAGAWRSPGEAG---- 139
P P + G G P P R P+G PPG++G G GE G
Sbjct: 912 PGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK 971
Query: 140 AADGSPHVSTSPTPAPGRRGGREARLRP----MPTPSWIPVSSHKKAARSEPAERRPSLL 195
P P G G R P P +P ++ K+ A+ +P + S
Sbjct: 972 TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGK 1031
Query: 196 QG--GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G G RG G+ + A +GG P PP G P G
Sbjct: 1032 DGPAGLRGFPGERGLPGAQGAPGLKGGEGPQG-PPGPVGSPGERG 1075
Score = 38.1 bits (87), Expect = 0.007
Identities = 49/162 (30%), Positives = 57/162 (35%), Gaps = 27/162 (16%)
Query: 94 PAPVMSHGEAGTPAPRAARLG-----APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVS 148
P PV S GE G+ A A +G P+G P GE+G G G AG DG
Sbjct: 1065 PGPVGSPGERGS-AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG-RDGVQGPV 1122
Query: 149 TSPTPA-PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG---------- 197
P PA P G + + P K + E P LQG
Sbjct: 1123 GLPGPAGPAGSPGEDGDKGEIGEPG----QKGSKGDKGENGPPGPPGLQGPVGAPGIAGG 1178
Query: 198 -GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+ GP GM QK G G P PP G L G
Sbjct: 1179 DGEPGPRGQQGMFGQK----GDEGARGFPGPPGPIGLQGLPG 1216
Score = 35.8 bits (81), Expect = 0.033
Identities = 48/148 (32%), Positives = 54/148 (36%), Gaps = 28/148 (18%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTP 153
P PV GE G P AA P G PPG G G S GE G P + P
Sbjct: 1425 PGPV---GEQGLPG--AAGQDGPPGPMGPPGLPGLKGDPGSKGEKG----HPGLIGLIGP 1475
Query: 154 APGRRGGREARLRPMPTPS-------WIPVSSHKKAARSEPAERRPSLLQGGQRGPAHST 206
PG +G + R P S IP + P P G +G ST
Sbjct: 1476 -PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQ----GPKGNKGST 1530
Query: 207 GMETQKEAFDGQGGRSPLPLPPSTAGPP 234
G GQ G S LP PP + GPP
Sbjct: 1531 GPA-------GQKGDSGLPGPPGSPGPP 1551
Score = 34.7 bits (78), Expect = 0.075
Identities = 45/173 (26%), Positives = 58/173 (33%), Gaps = 48/173 (27%)
Query: 104 GTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--------AADGSPHVSTSPTPAP 155
G P P P G PPG +G G PG+ G ADG P + P
Sbjct: 454 GPPGP-----AGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLP 508
Query: 156 GRRGG-------------------REARLR------PM-----PTPSWIPVSSHKKAARS 185
R GG ++AR+ PM P P P SS K
Sbjct: 509 FRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG 568
Query: 186 EPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+P + P G +GP TG ++ GGR +P P G +G
Sbjct: 569 DPGPQGPR----GVQGPPGPTGKPGKRGRPGADGGRG-MPGEPGAKGDRGFDG 616
Score = 31.6 bits (70), Expect = 0.63
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 20/131 (15%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
G G P P+ P+G PPG++G G PG G P PG +G
Sbjct: 682 GVDGPPGPKGNM--GPQGEPGPPGQQGNPGPQGLPGPQG-----------PIGPPGEKGP 728
Query: 161 R-EARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMETQKEA 214
+ + L +P P K+ E P QG G RG + G+ K +
Sbjct: 729 QGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGS 788
Query: 215 FDGQGGRSPLP 225
G+ G P
Sbjct: 789 -KGEKGEDGFP 798
Score = 28.9 bits (63), Expect = 4.1
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA--ADGSP-------- 145
P +S EA A A RG P G GR G PG +GA G P
Sbjct: 519 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 578
Query: 146 HVSTSPTPAPGRRG 159
PT PG+RG
Sbjct: 579 QGPPGPTGKPGKRG 592
Score = 27.7 bits (60), Expect = 9.1
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 180 KKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+K + EPA P +L G GPA G+ G G + P P GPP G
Sbjct: 436 EKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP----PGLQGPTGPPGDPGDRGPPGRPG 490
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 47.0 bits (110), Expect = 1e-05
Identities = 40/129 (31%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 116 PRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPA-PGRRGGREARLRPMPTPSWI 174
PRG P G +GRAG PG +G A + P PGR+G + + P
Sbjct: 767 PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFP-----GF 821
Query: 175 PVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGME-----TQKEAFDGQGGRSPLPLPPS 229
P ++ +K AR + P GQRGP G T K G G P PP
Sbjct: 822 PGANGEKGARGVAGKPGPR----GQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPG 877
Query: 230 TAGPPPLEG 238
GP +G
Sbjct: 878 ERGPQGPQG 886
Score = 45.8 bits (107), Expect = 3e-05
Identities = 53/196 (27%), Positives = 65/196 (33%), Gaps = 44/196 (22%)
Query: 80 GAGRVVRLAGIWRDPAPVMSHGEAGTPAP--------RAARLGA--------------PR 117
G G VV G + P+ G G P P A + GA P
Sbjct: 925 GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPA 984
Query: 118 GASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREAR----LRPMPTPSW 173
G PGE G GA +PG G P P +PG RG L P P
Sbjct: 985 GLRGFPGERGLPGAQGAPGLKGGE--GPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQG 1042
Query: 174 IPVSSHKKAARSEPAERRPSLLQG--------GQRGPAHSTGMETQK--------EAFDG 217
P + +K A E + P+ G G GPA S G + K + G
Sbjct: 1043 PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKG 1102
Query: 218 QGGRSPLPLPPSTAGP 233
G + P PP GP
Sbjct: 1103 DKGENGPPGPPGLQGP 1118
Score = 45.4 bits (106), Expect = 4e-05
Identities = 47/167 (28%), Positives = 61/167 (36%), Gaps = 20/167 (11%)
Query: 82 GRVVRLAGIWRDPAPVMSHGEAGTPAPRA-ARLGAPRGASPPPGEEGRAGAWRSPGEAG- 139
G V + G+ P GEAG P P A +G P+G GE G GA PG G
Sbjct: 1204 GSVGSVGGVGEKGEP----GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1259
Query: 140 AADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-- 197
D P + P PG G P P+ K +P + P G
Sbjct: 1260 PGDDGPKGNPGPVGFPGDPGPPGE-----PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA 1314
Query: 198 ------GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+RGP + G E ++ G G + PP GP +G
Sbjct: 1315 GPPGPPGKRGPPGAAGAE-GRQGEKGAKGEAGAEGPPGKTGPVGPQG 1360
Score = 40.0 bits (92), Expect = 0.002
Identities = 45/164 (27%), Positives = 60/164 (36%), Gaps = 18/164 (10%)
Query: 85 VRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAA--D 142
+ L G+ P +G+ G P PRG P G +G G S G G
Sbjct: 1158 IGLQGLPGPPGEKGENGDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEK 1215
Query: 143 GSPHVSTSPTPAPGRRG-GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG---- 197
G P + +P P PG G G R + P ++ A+ P + P G
Sbjct: 1216 GEPGEAGNPGP-PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGF 1274
Query: 198 -------GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPP 234
G+ GPA G+ K DG G+ P P AGPP
Sbjct: 1275 PGDPGPPGEPGPAGQDGVGGDK-GEDGDPGQPGPPGPSGEAGPP 1317
Score = 39.7 bits (91), Expect = 0.002
Identities = 40/139 (28%), Positives = 52/139 (37%), Gaps = 18/139 (12%)
Query: 101 GEAGTPAPRAARLG--APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRR 158
G+ G P P +G P G + P GE G G PGE G + P P
Sbjct: 919 GKTGPPGPGGV-VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGI 977
Query: 159 GGRE--ARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-GQRGPAHSTGMETQKEAF 215
G++ A LR P +P A+ P L G G +GP G ++ +
Sbjct: 978 SGKDGPAGLRGFPGERGLP-----------GAQGAPGLKGGEGPQGPPGPVGSPGERGS- 1025
Query: 216 DGQGGRSPLPLPPSTAGPP 234
G G LP P GPP
Sbjct: 1026 AGTAGPIGLPGRPGPQGPP 1044
Score = 38.5 bits (88), Expect = 0.005
Identities = 46/163 (28%), Positives = 54/163 (33%), Gaps = 32/163 (19%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSP-- 151
P + GE+G P P+ PRG PPG G+ G PG ADG + P
Sbjct: 507 PGSSGAKGESGDPGPQG-----PRGVQGPPGPTGKPGKRGRPG----ADGGRGMPGEPGA 557
Query: 152 ---------TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG----- 197
PG +G R R P P R E E P L G
Sbjct: 558 KGDRGFDGLPGLPGDKGHRGER-----GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR 612
Query: 198 GQRGPAHSTGMETQ--KEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G GP + G Q DG G P GPP +G
Sbjct: 613 GLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQG 655
Score = 38.1 bits (87), Expect = 0.007
Identities = 43/165 (26%), Positives = 57/165 (34%), Gaps = 21/165 (12%)
Query: 94 PAPVMSHGEAGTPAPRAAR----------LGAPRGASPPPGEEGRAGAWRSPGEAG---- 139
P P + G G P P R P+G PPG++G G GE G
Sbjct: 861 PGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK 920
Query: 140 AADGSPHVSTSPTPAPGRRGGREARLRP----MPTPSWIPVSSHKKAARSEPAERRPSLL 195
P P G G R P P +P ++ K+ A+ +P + S
Sbjct: 921 TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGK 980
Query: 196 QG--GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G G RG G+ + A +GG P PP G P G
Sbjct: 981 DGPAGLRGFPGERGLPGAQGAPGLKGGEGPQG-PPGPVGSPGERG 1024
Score = 38.1 bits (87), Expect = 0.007
Identities = 49/162 (30%), Positives = 57/162 (35%), Gaps = 27/162 (16%)
Query: 94 PAPVMSHGEAGTPAPRAARLG-----APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVS 148
P PV S GE G+ A A +G P+G P GE+G G G AG DG
Sbjct: 1014 PGPVGSPGERGS-AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG-RDGVQGPV 1071
Query: 149 TSPTPA-PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG---------- 197
P PA P G + + P K + E P LQG
Sbjct: 1072 GLPGPAGPAGSPGEDGDKGEIGEPG----QKGSKGDKGENGPPGPPGLQGPVGAPGIAGG 1127
Query: 198 -GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+ GP GM QK G G P PP G L G
Sbjct: 1128 DGEPGPRGQQGMFGQK----GDEGARGFPGPPGPIGLQGLPG 1165
Score = 35.8 bits (81), Expect = 0.033
Identities = 48/148 (32%), Positives = 54/148 (36%), Gaps = 28/148 (18%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTP 153
P PV GE G P AA P G PPG G G S GE G P + P
Sbjct: 1374 PGPV---GEQGLPG--AAGQDGPPGPMGPPGLPGLKGDPGSKGEKG----HPGLIGLIGP 1424
Query: 154 APGRRGGREARLRPMPTPS-------WIPVSSHKKAARSEPAERRPSLLQGGQRGPAHST 206
PG +G + R P S IP + P P G +G ST
Sbjct: 1425 -PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQ----GPKGNKGST 1479
Query: 207 GMETQKEAFDGQGGRSPLPLPPSTAGPP 234
G GQ G S LP PP + GPP
Sbjct: 1480 GPA-------GQKGDSGLPGPPGSPGPP 1500
Score = 34.7 bits (78), Expect = 0.075
Identities = 45/173 (26%), Positives = 58/173 (33%), Gaps = 48/173 (27%)
Query: 104 GTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--------AADGSPHVSTSPTPAP 155
G P P P G PPG +G G PG+ G ADG P + P
Sbjct: 403 GPPGP-----AGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLP 457
Query: 156 GRRGG-------------------REARLR------PM-----PTPSWIPVSSHKKAARS 185
R GG ++AR+ PM P P P SS K
Sbjct: 458 FRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG 517
Query: 186 EPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+P + P G +GP TG ++ GGR +P P G +G
Sbjct: 518 DPGPQGPR----GVQGPPGPTGKPGKRGRPGADGGRG-MPGEPGAKGDRGFDG 565
Score = 31.6 bits (70), Expect = 0.63
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 20/131 (15%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
G G P P+ P+G PPG++G G PG G P PG +G
Sbjct: 631 GVDGPPGPKGNM--GPQGEPGPPGQQGNPGPQGLPGPQG-----------PIGPPGEKGP 677
Query: 161 R-EARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMETQKEA 214
+ + L +P P K+ E P QG G RG + G+ K +
Sbjct: 678 QGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGS 737
Query: 215 FDGQGGRSPLP 225
G+ G P
Sbjct: 738 -KGEKGEDGFP 747
Score = 28.9 bits (63), Expect = 4.1
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA--ADGSP-------- 145
P +S EA A A RG P G GR G PG +GA G P
Sbjct: 468 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 527
Query: 146 HVSTSPTPAPGRRG 159
PT PG+RG
Sbjct: 528 QGPPGPTGKPGKRG 541
Score = 27.7 bits (60), Expect = 9.1
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 180 KKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+K + EPA P +L G GPA G+ G G + P P GPP G
Sbjct: 385 EKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP----PGLQGPTGPPGDPGDRGPPGRPG 439
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 47.0 bits (110), Expect = 1e-05
Identities = 40/129 (31%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 116 PRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPA-PGRRGGREARLRPMPTPSWI 174
PRG P G +GRAG PG +G A + P PGR+G + + P
Sbjct: 806 PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFP-----GF 860
Query: 175 PVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGME-----TQKEAFDGQGGRSPLPLPPS 229
P ++ +K AR + P GQRGP G T K G G P PP
Sbjct: 861 PGANGEKGARGVAGKPGPR----GQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPG 916
Query: 230 TAGPPPLEG 238
GP +G
Sbjct: 917 ERGPQGPQG 925
Score = 45.8 bits (107), Expect = 3e-05
Identities = 53/196 (27%), Positives = 65/196 (33%), Gaps = 44/196 (22%)
Query: 80 GAGRVVRLAGIWRDPAPVMSHGEAGTPAP--------RAARLGA--------------PR 117
G G VV G + P+ G G P P A + GA P
Sbjct: 964 GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPA 1023
Query: 118 GASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREAR----LRPMPTPSW 173
G PGE G GA +PG G P P +PG RG L P P
Sbjct: 1024 GLRGFPGERGLPGAQGAPGLKGGE--GPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQG 1081
Query: 174 IPVSSHKKAARSEPAERRPSLLQG--------GQRGPAHSTGMETQK--------EAFDG 217
P + +K A E + P+ G G GPA S G + K + G
Sbjct: 1082 PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKG 1141
Query: 218 QGGRSPLPLPPSTAGP 233
G + P PP GP
Sbjct: 1142 DKGENGPPGPPGLQGP 1157
Score = 45.4 bits (106), Expect = 4e-05
Identities = 47/167 (28%), Positives = 61/167 (36%), Gaps = 20/167 (11%)
Query: 82 GRVVRLAGIWRDPAPVMSHGEAGTPAPRA-ARLGAPRGASPPPGEEGRAGAWRSPGEAG- 139
G V + G+ P GEAG P P A +G P+G GE G GA PG G
Sbjct: 1243 GSVGSVGGVGEKGEP----GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1298
Query: 140 AADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-- 197
D P + P PG G P P+ K +P + P G
Sbjct: 1299 PGDDGPKGNPGPVGFPGDPGPPGE-----PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEA 1353
Query: 198 ------GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+RGP + G E ++ G G + PP GP +G
Sbjct: 1354 GPPGPPGKRGPPGAAGAE-GRQGEKGAKGEAGAEGPPGKTGPVGPQG 1399
Score = 40.0 bits (92), Expect = 0.002
Identities = 45/164 (27%), Positives = 60/164 (36%), Gaps = 18/164 (10%)
Query: 85 VRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAA--D 142
+ L G+ P +G+ G P PRG P G +G G S G G
Sbjct: 1197 IGLQGLPGPPGEKGENGDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEK 1254
Query: 143 GSPHVSTSPTPAPGRRG-GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG---- 197
G P + +P P PG G G R + P ++ A+ P + P G
Sbjct: 1255 GEPGEAGNPGP-PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGF 1313
Query: 198 -------GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPP 234
G+ GPA G+ K DG G+ P P AGPP
Sbjct: 1314 PGDPGPPGEPGPAGQDGVGGDK-GEDGDPGQPGPPGPSGEAGPP 1356
Score = 39.7 bits (91), Expect = 0.002
Identities = 40/139 (28%), Positives = 52/139 (37%), Gaps = 18/139 (12%)
Query: 101 GEAGTPAPRAARLG--APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRR 158
G+ G P P +G P G + P GE G G PGE G + P P
Sbjct: 958 GKTGPPGPGGV-VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGI 1016
Query: 159 GGRE--ARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-GQRGPAHSTGMETQKEAF 215
G++ A LR P +P A+ P L G G +GP G ++ +
Sbjct: 1017 SGKDGPAGLRGFPGERGLP-----------GAQGAPGLKGGEGPQGPPGPVGSPGERGS- 1064
Query: 216 DGQGGRSPLPLPPSTAGPP 234
G G LP P GPP
Sbjct: 1065 AGTAGPIGLPGRPGPQGPP 1083
Score = 38.5 bits (88), Expect = 0.005
Identities = 46/163 (28%), Positives = 54/163 (33%), Gaps = 32/163 (19%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSP-- 151
P + GE+G P P+ PRG PPG G+ G PG ADG + P
Sbjct: 546 PGSSGAKGESGDPGPQG-----PRGVQGPPGPTGKPGKRGRPG----ADGGRGMPGEPGA 596
Query: 152 ---------TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG----- 197
PG +G R R P P R E E P L G
Sbjct: 597 KGDRGFDGLPGLPGDKGHRGER-----GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR 651
Query: 198 GQRGPAHSTGMETQ--KEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G GP + G Q DG G P GPP +G
Sbjct: 652 GLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQG 694
Score = 38.1 bits (87), Expect = 0.007
Identities = 43/165 (26%), Positives = 57/165 (34%), Gaps = 21/165 (12%)
Query: 94 PAPVMSHGEAGTPAPRAAR----------LGAPRGASPPPGEEGRAGAWRSPGEAG---- 139
P P + G G P P R P+G PPG++G G GE G
Sbjct: 900 PGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK 959
Query: 140 AADGSPHVSTSPTPAPGRRGGREARLRP----MPTPSWIPVSSHKKAARSEPAERRPSLL 195
P P G G R P P +P ++ K+ A+ +P + S
Sbjct: 960 TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGK 1019
Query: 196 QG--GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G G RG G+ + A +GG P PP G P G
Sbjct: 1020 DGPAGLRGFPGERGLPGAQGAPGLKGGEGPQG-PPGPVGSPGERG 1063
Score = 38.1 bits (87), Expect = 0.007
Identities = 49/162 (30%), Positives = 57/162 (35%), Gaps = 27/162 (16%)
Query: 94 PAPVMSHGEAGTPAPRAARLG-----APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVS 148
P PV S GE G+ A A +G P+G P GE+G G G AG DG
Sbjct: 1053 PGPVGSPGERGS-AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG-RDGVQGPV 1110
Query: 149 TSPTPA-PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG---------- 197
P PA P G + + P K + E P LQG
Sbjct: 1111 GLPGPAGPAGSPGEDGDKGEIGEPG----QKGSKGDKGENGPPGPPGLQGPVGAPGIAGG 1166
Query: 198 -GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+ GP GM QK G G P PP G L G
Sbjct: 1167 DGEPGPRGQQGMFGQK----GDEGARGFPGPPGPIGLQGLPG 1204
Score = 35.8 bits (81), Expect = 0.033
Identities = 48/148 (32%), Positives = 54/148 (36%), Gaps = 28/148 (18%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTP 153
P PV GE G P AA P G PPG G G S GE G P + P
Sbjct: 1413 PGPV---GEQGLPG--AAGQDGPPGPMGPPGLPGLKGDPGSKGEKG----HPGLIGLIGP 1463
Query: 154 APGRRGGREARLRPMPTPS-------WIPVSSHKKAARSEPAERRPSLLQGGQRGPAHST 206
PG +G + R P S IP + P P G +G ST
Sbjct: 1464 -PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQ----GPKGNKGST 1518
Query: 207 GMETQKEAFDGQGGRSPLPLPPSTAGPP 234
G GQ G S LP PP + GPP
Sbjct: 1519 GPA-------GQKGDSGLPGPPGSPGPP 1539
Score = 34.7 bits (78), Expect = 0.075
Identities = 45/173 (26%), Positives = 58/173 (33%), Gaps = 48/173 (27%)
Query: 104 GTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--------AADGSPHVSTSPTPAP 155
G P P P G PPG +G G PG+ G ADG P + P
Sbjct: 442 GPPGP-----AGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLP 496
Query: 156 GRRGG-------------------REARLR------PM-----PTPSWIPVSSHKKAARS 185
R GG ++AR+ PM P P P SS K
Sbjct: 497 FRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG 556
Query: 186 EPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+P + P G +GP TG ++ GGR +P P G +G
Sbjct: 557 DPGPQGPR----GVQGPPGPTGKPGKRGRPGADGGRG-MPGEPGAKGDRGFDG 604
Score = 31.6 bits (70), Expect = 0.63
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 20/131 (15%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
G G P P+ P+G PPG++G G PG G P PG +G
Sbjct: 670 GVDGPPGPKGNM--GPQGEPGPPGQQGNPGPQGLPGPQG-----------PIGPPGEKGP 716
Query: 161 R-EARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMETQKEA 214
+ + L +P P K+ E P QG G RG + G+ K +
Sbjct: 717 QGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGS 776
Query: 215 FDGQGGRSPLP 225
G+ G P
Sbjct: 777 -KGEKGEDGFP 786
Score = 28.9 bits (63), Expect = 4.1
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA--ADGSP-------- 145
P +S EA A A RG P G GR G PG +GA G P
Sbjct: 507 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 566
Query: 146 HVSTSPTPAPGRRG 159
PT PG+RG
Sbjct: 567 QGPPGPTGKPGKRG 580
Score = 27.7 bits (60), Expect = 9.1
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 180 KKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+K + EPA P +L G GPA G+ G G + P P GPP G
Sbjct: 424 EKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP----PGLQGPTGPPGDPGDRGPPGRPG 478
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 47.0 bits (110), Expect = 1e-05
Identities = 47/156 (30%), Positives = 53/156 (33%), Gaps = 22/156 (14%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTP------- 153
GE G P PRG PPG G +G PG AGA +P P P
Sbjct: 1210 GERGDPGSPGISPPGPRGKKGPPGPPGSSG---PPGPAGATGRAPKDIPDPGPPGDQGPP 1266
Query: 154 -------APGRRG--GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGP 202
APG G G LR P +P P + G GQ+GP
Sbjct: 1267 GPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGP 1326
Query: 203 AHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G + F G G LP PP GP L G
Sbjct: 1327 VGFPGPQ-GPHGFPGPPGEKGLPGPPGRKGPTGLPG 1361
Score = 40.8 bits (94), Expect = 0.001
Identities = 46/163 (28%), Positives = 58/163 (35%), Gaps = 34/163 (20%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPR-----GASPPPGEEGRAGAWRSPGEAGAADGSPHVS 148
P P G G P P+ R G P G PG EG GA PGE G +
Sbjct: 890 PGPFGDDGLPGPPGPKGPR-GLPGFPGFPGERGKPGAEGCPGAKGEPGEKGMSG------ 942
Query: 149 TSPTPAPGRRG--GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAH 204
PG RG G + + P + + S K P E P G G+RG
Sbjct: 943 -----LPGDRGLRGAKGAIGPPGDEGEMAIISQK----GTPGEPGPPGDDGFPGERGDKG 993
Query: 205 STGMETQKEA---------FDGQGGRSPLPLPPSTAGPPPLEG 238
+ GM+ ++ G+ G P PP GPP G
Sbjct: 994 TPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGPPGPPGPPGSTG 1036
Score = 39.3 bits (90), Expect = 0.003
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 24/146 (16%)
Query: 93 DPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPT 152
DP P G+ G P P + P G+ G G G + G +G D P P
Sbjct: 1149 DPGPRGLQGDPGIPGPPGIK--GPSGSPGLNGLHGLKGQKGTKGASGLHDVGP---PGPV 1203
Query: 153 PAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQK 212
PG +G R P +P P KK P G GPA +TG +
Sbjct: 1204 GIPGLKGERGDPGSPGISP---PGPRGKKGPPGPPG-------SSGPPGPAGATGRAPKD 1253
Query: 213 EAFDGQGGRSPLPLPPSTAGPPPLEG 238
P P PP GPP +G
Sbjct: 1254 ---------IPDPGPPGDQGPPGPDG 1270
Score = 38.1 bits (87), Expect = 0.007
Identities = 45/162 (27%), Positives = 60/162 (37%), Gaps = 24/162 (14%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAA--DGSPHVSTSP 151
P P G G P+ + G P PPG +G G+ PG GA+ G P + P
Sbjct: 1056 PGPPGFSGIDGARGPKGNK-GDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQ-GP 1113
Query: 152 TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAER---RPSLLQG--------GQR 200
+PGR G + P P R +P E P LQG G +
Sbjct: 1114 RGSPGRPGPPGS-----SGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIK 1168
Query: 201 GPAHSTGMETQKEAFDGQGGRSPLPL----PPSTAGPPPLEG 238
GP+ S G+ +G + L PP G P L+G
Sbjct: 1169 GPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKG 1210
Score = 37.4 bits (85), Expect = 0.012
Identities = 34/134 (25%), Positives = 43/134 (32%), Gaps = 11/134 (8%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
G+ GT P G PG +G G PG G + P P PG G
Sbjct: 1184 GQKGTKGASGLHDVGPPGPVGIPGLKGERG---DPGSPGISPPGPRGKKGPPGPPGSSG- 1239
Query: 161 REARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGG 220
P P+ + K P + G RG G+ + G+ G
Sbjct: 1240 -------PPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPG 1292
Query: 221 RSPLPLPPSTAGPP 234
LP PP GPP
Sbjct: 1293 DCGLPGPPGPPGPP 1306
Score = 36.6 bits (83), Expect = 0.020
Identities = 51/168 (30%), Positives = 58/168 (34%), Gaps = 37/168 (22%)
Query: 101 GEAGTPAPRAARLGAP----RGASPPPGEEGRAGAWRSPGEAG------AADGSPHVSTS 150
G+ G P P LG P G PPG +G G PGEAG +A G P S
Sbjct: 382 GDVGPPGPPGL-LGRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGS 440
Query: 151 PTPAPGRRGGREARLRPMPTPSWI------PVSSHKKAARSEPAERRPSLLQG------- 197
P PG G L+ +P S I P K P R P +G
Sbjct: 441 P-GLPGAPG-----LQGLPGSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCAC 494
Query: 198 -----GQRGPAHSTGMETQKE--AFDGQGGRSPLPLPPSTAGPPPLEG 238
G GP G + K G G P PP GPP L G
Sbjct: 495 EPGPMGPPGPPGLPGRQGSKGDLGLPGWLGTKGDPGPPGAEGPPGLPG 542
Score = 35.4 bits (80), Expect = 0.044
Identities = 47/172 (27%), Positives = 61/172 (35%), Gaps = 32/172 (18%)
Query: 93 DPAPVMSHGEAGTPAPRAAR--------LGA-----PRGASPPPGEEGRAGAWRSPGEAG 139
+P P+ G G P + ++ LG P GA PPG G+ GA PG G
Sbjct: 495 EPGPMGPPGPPGLPGRQGSKGDLGLPGWLGTKGDPGPPGAEGPPGLPGKHGASGPPGNKG 554
Query: 140 AADGSPHVS-----------TSPTPAPGRRG--GREARLRPMPTPSWIPVSSHKKAARSE 186
A G VS P PG+ G GR+ P P H+ A
Sbjct: 555 -AKGDMVVSRVKGHKGERGPDGPPGFPGQPGSHGRDGHAGEKGDPG--PPGDHEDATPGG 611
Query: 187 PAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
P L G+ GP G+ G+ G +P P GP L+G
Sbjct: 612 KGFPGP-LGPPGKAGPVGPPGLGFPGP--PGERGHPGVPGHPGVRGPDGLKG 660
Score = 32.7 bits (73), Expect = 0.28
Identities = 47/159 (29%), Positives = 54/159 (33%), Gaps = 19/159 (11%)
Query: 96 PVMSHGEAGTPA-PRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPA 154
P G AG P P RGA PG+ G G SPG G G P P PA
Sbjct: 808 PKGREGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPG-GKGQPGDVGPPGPA 866
Query: 155 PGRRG-----GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAH 204
G +G GR P P IP P + P L G G+RG
Sbjct: 867 -GMKGLPGLPGRPGAHGPPGLPG-IPGPFGDDGLPGPPGPKGPRGLPGFPGFPGERGKPG 924
Query: 205 STGM-----ETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+ G E ++ G G L GPP EG
Sbjct: 925 AEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEG 963
Score = 32.0 bits (71), Expect = 0.48
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 116 PRGASPPPGEEGRAGAWRSPGEAGA-----ADGSPHVSTSPTPAPGRRG-------GREA 163
P G PPG +G G +PG +G+ G+P + P P PG RG G E
Sbjct: 678 PPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPGTPGTAEIPGP-PGFRGDMGDPGFGGEK 736
Query: 164 RLRPM--PTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGR 221
P+ P P P + +K +PA L G+RG + G++ + G
Sbjct: 737 GSSPVGPPGPPGSPGVNGQKGIPGDPAFGH--LGPPGKRGLSGVPGIKGPRGDPGCPGAE 794
Query: 222 SPLPLPP--STAGPPPLEG 238
P +P GP EG
Sbjct: 795 GPAGIPGFLGLKGPKGREG 813
Score = 30.8 bits (68), Expect = 1.1
Identities = 42/148 (28%), Positives = 51/148 (34%), Gaps = 25/148 (16%)
Query: 101 GEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAGA------ADGSPHVSTSPTP 153
G G P P+ P G PG GR G PG G D P + P
Sbjct: 1325 GPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLP-G 1383
Query: 154 APGRRGGREARLRP-MPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMET 210
APG RG A P M PS + EP + G G GP G +T
Sbjct: 1384 APGMRGPEGAMGLPGMRGPS-------GPGCKGEPGLDGRRGVDGVPGSPGPPGRKG-DT 1435
Query: 211 QKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
++ + G G PP G P +G
Sbjct: 1436 GEDGYPGGPG------PPGPIGDPGPKG 1457
Score = 30.4 bits (67), Expect = 1.4
Identities = 19/68 (27%), Positives = 25/68 (36%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTP 153
P P G+ G P + +P G PPG G G PG+ P +
Sbjct: 718 PGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGVNGQKGIPGDPAFGHLGPPGKRGLSG 777
Query: 154 APGRRGGR 161
PG +G R
Sbjct: 778 VPGIKGPR 785
Score = 29.6 bits (65), Expect = 2.4
Identities = 41/152 (26%), Positives = 55/152 (36%), Gaps = 12/152 (7%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTP 153
P P + G +G+ + R G P G + PG G G PG G SP P
Sbjct: 691 PGPQGAPGLSGSDGHKG-RPGTP-GTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPG 748
Query: 154 APGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQ 211
+PG G + P P K+ P + P G G GPA G
Sbjct: 749 SPGVNGQKGIPGDPAFGHLGPP---GKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLGL 805
Query: 212 K--EAFDGQGGRSPLPLPPSTA---GPPPLEG 238
K + +G G +P PP + G P + G
Sbjct: 806 KGPKGREGHAGFPGVPGPPGHSCERGAPGIPG 837
Score = 28.5 bits (62), Expect = 5.3
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPP---PGEEGRAGAWRSPGEAGAA--DGSPHVSTS 150
P+ GE G LGA +G PG G G+W + G AG G P +
Sbjct: 162 PLGHPGEKGEKGNSVFILGAVKGIQGDRGDPGLPGLPGSWGAGGPAGPTGYPGEPGL-VG 220
Query: 151 PTPAPGRRG 159
P PGR G
Sbjct: 221 PPGQPGRPG 229
Score = 27.7 bits (60), Expect = 9.1
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 101 GEAGTPA-PRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHV 147
G+ G P P + G P G + PGE G G PG G G+P V
Sbjct: 190 GDPGLPGLPGSWGAGGPAGPTGYPGEPGLVGPPGQPGRPG-LKGNPGV 236
Score = 27.7 bits (60), Expect = 9.1
Identities = 31/138 (22%), Positives = 43/138 (31%), Gaps = 33/138 (23%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
G G P P + P PPG+ G G + G+ G P GR G
Sbjct: 347 GNRGHPGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVG--------PPGPPGLLGRPGE 398
Query: 161 REARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGG 220
A + P P P G G G+ + ++ G+ G
Sbjct: 399 ACAGMIGPPGPQGFP----------------------GLPGLPGEAGIPGRPDSAPGKPG 436
Query: 221 RSPLPLPPSTAGPPPLEG 238
+ P P G P L+G
Sbjct: 437 K---PGSPGLPGAPGLQG 451
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 47.0 bits (110), Expect = 1e-05
Identities = 56/162 (34%), Positives = 67/162 (41%), Gaps = 30/162 (18%)
Query: 92 RDPAP--VMSHGEAGTPAPRAARLG-APRGASPPPGEEGRA----GAWRSPGEAGAAD-- 142
R PAP V+S G AP LG AP+ + PG E RA GA R+PG AG D
Sbjct: 1083 RAPAPSAVVSSRNGGETAP--GPLGPAPKNGTLEPGTERRAPETGGAPRAPG-AGRLDLG 1139
Query: 143 --GSPHVSTSPTPAPGRRGGREARL------RPMPTPSWIPVSSHKKAARSEPA--ERRP 192
G V T P G G +A+ RP P P +P + R EPA RP
Sbjct: 1140 SGGRAPVGTGTAPGGGPGSGVDAKAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARP 1199
Query: 193 SLLQGGQRG-PAHSTGMETQKEAFDGQGGRSPLPLPPSTAGP 233
+ G+ G P G +T A G G P P GP
Sbjct: 1200 EVAPEGEPGAPDSRAGGDT---ALSGDGD----PPKPERKGP 1234
Score = 29.6 bits (65), Expect = 2.4
Identities = 35/135 (25%), Positives = 48/135 (35%), Gaps = 21/135 (15%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
G T A A + RG +P EE SPGE ++ G P RRG
Sbjct: 645 GAGETLAGDPAEVLGERGTAPWVEEEEEEEEGSSPGEDSSSLGG---------GPSRRG- 694
Query: 161 REARLRPMPTPSWIPVSSHKKAARSEPAERRPSLL-QGGQRGPAHSTGMETQKEAFDGQG 219
P+P P+ S + A P ER ++ GG E +G
Sbjct: 695 ------PLP----CPLCSREGACSCLPLERGDAVAGWGGHPALGCPHPPEDDSSLRAERG 744
Query: 220 GRSPLPLPPSTAGPP 234
+ LP+ P + PP
Sbjct: 745 SLADLPMAPPASAPP 759
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 45.8 bits (107), Expect = 3e-05
Identities = 46/160 (28%), Positives = 58/160 (36%), Gaps = 26/160 (16%)
Query: 79 LGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEA 138
+GA G+ +P P S GE+G + P+G P GEEG+ G GEA
Sbjct: 333 VGAAGATGARGLVGEPGPAGSKGESGNKGEPGS--AGPQGPPGPSGEEGKRG---PNGEA 387
Query: 139 GAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGG 198
G+A P PG RG P +P + + P R S G
Sbjct: 388 GSA--------GPPGPPGLRGS--------PGSRGLPGADGRAGVMGPPGSRGAS-GPAG 430
Query: 199 QRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
RGP G + G G LP P GP EG
Sbjct: 431 VRGPNGDAG----RPGEPGLMGPRGLPGSPGNIGPAGKEG 466
Score = 41.2 bits (95), Expect = 8e-04
Identities = 48/158 (30%), Positives = 57/158 (36%), Gaps = 16/158 (10%)
Query: 88 AGIWRDPAPVMSHGEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPH 146
AG P P G G P P L PRG P G G GA PG AG S
Sbjct: 792 AGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGE 851
Query: 147 VSTS-PTPAPGRRGGREARLRPMPTPSWIPVSSHKK---AARSEPAERRPSLLQG--GQR 200
T+ P PG +G L P +P S ++ E P + G G R
Sbjct: 852 AGTAGPPGTPGPQG-----LLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGAR 906
Query: 201 GPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
GP + G A G+ GR P GPP +G
Sbjct: 907 GPPGAVGSPGVNGA-PGEAGRDG---NPGNDGPPGRDG 940
Score = 41.2 bits (95), Expect = 8e-04
Identities = 46/158 (29%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 79 LGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEA 138
LGA ++ L G + G G P P + P GA PPG G G +PGEA
Sbjct: 867 LGAPGILGLPGSRGERGLPGVAGAVGEPGPLG--IAGPPGARGPPGAVGSPGVNGAPGEA 924
Query: 139 GAADGSPHVSTSP--TPAPGRRGGR---------EARLRPMPTPSWIPVSSHKKAARSEP 187
G DG+P P PG +G R A P P P H + P
Sbjct: 925 G-RDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGP 983
Query: 188 AERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLP 225
+ G RGP+ G+ K G+ G LP
Sbjct: 984 SGPVGPAGAVGPRGPSGPQGIRGDK-GEPGEKGPRGLP 1020
Score = 37.0 bits (84), Expect = 0.015
Identities = 47/162 (29%), Positives = 59/162 (36%), Gaps = 32/162 (19%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--------AADGSPHVSTSPT 152
GE G P P GA+ PG +G GA GE G A G + P
Sbjct: 715 GEVGPAGPNG--FAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPG 772
Query: 153 PA--------PGRRG--GREARLRPMPTPSWI------PVSSHKKAARSEPAERRPSLLQ 196
PA PG G G R P P PS I P + K+ R ++ P + +
Sbjct: 773 PAGSRGDGGPPGMTGFPGAAGRTGP-PGPSGISGPPGPPGPAGKEGLRGPRGDQGP-VGR 830
Query: 197 GGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+ G G +K G G + PP T GP L G
Sbjct: 831 TGEVGAVGPPGFAGEK----GPSGEAGTAGPPGTPGPQGLLG 868
Score = 36.6 bits (83), Expect = 0.020
Identities = 42/153 (27%), Positives = 50/153 (32%), Gaps = 28/153 (18%)
Query: 96 PVMSHGEAGTPAPR----------AARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSP 145
P+ S G +G P P A P G S PGE G AG GE G
Sbjct: 605 PIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRG 664
Query: 146 HVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHS 205
+ PGR G R A P P + R E P+ G GP S
Sbjct: 665 EIGN-----PGRDGARGA-----PGAVGAPGPAGATGDRGEAGAAGPA----GPAGPRGS 710
Query: 206 TGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G + G G + P AG P +G
Sbjct: 711 PGERGEV----GPAGPNGFAGPAGAAGQPGAKG 739
Score = 35.8 bits (81), Expect = 0.033
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 21/76 (27%)
Query: 100 HGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAA--------DGSPHV---- 147
HGE G P P PRG PPGE G AG G G + G P V
Sbjct: 576 HGEFGLPGP-----AGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAV 630
Query: 148 ----STSPTPAPGRRG 159
+ P+ PG RG
Sbjct: 631 GTAGPSGPSGLPGERG 646
Score = 35.4 bits (80), Expect = 0.044
Identities = 44/162 (27%), Positives = 58/162 (35%), Gaps = 31/162 (19%)
Query: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPH 146
LAG P P ++G G P P+ + G +G PPG G G PG +G A
Sbjct: 515 LAGARGAPGPDGNNGAQGPPGPQGVQGG--KGEQGPPGPPGFQGL---PGPSGPA----- 564
Query: 147 VSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAH 204
PG RG + +P + + R P E + G G RGP+
Sbjct: 565 ---GEVGKPGERG--------LHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSG 613
Query: 205 STGMETQK--------EAFDGQGGRSPLPLPPSTAGPPPLEG 238
G + K G G S LP AG P +G
Sbjct: 614 PPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKG 655
Score = 35.0 bits (79), Expect = 0.057
Identities = 43/156 (27%), Positives = 50/156 (32%), Gaps = 34/156 (21%)
Query: 96 PVMSHGEAGTPAPRA----ARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSP 151
P HG G P A PRG S P G G G PGE G P
Sbjct: 971 PAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKG---EPGEKG-----------P 1016
Query: 152 TPAPGRRGGREARLRP--------MPTPSWI-PVSSHKKAARSEPAERRPSLLQGGQRGP 202
PG +G + P P + P A S PA + G GP
Sbjct: 1017 RGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGP 1076
Query: 203 AHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
A G + G G + P PP GPP + G
Sbjct: 1077 AGIRGPQ-------GHQGPAGPPGPPGPPGPPGVSG 1105
Score = 34.3 bits (77), Expect = 0.097
Identities = 49/164 (29%), Positives = 57/164 (34%), Gaps = 35/164 (21%)
Query: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLGAP--RGASPPPGEEGRAGAWRSPGEAGA--AD 142
L G+ P GE G P G P GA PGE GR GA PG AGA +D
Sbjct: 185 LDGLKGQPGAPGVKGEPGAPGEN----GTPGQTGARGLPGERGRVGA---PGPAGARGSD 237
Query: 143 GS--------PHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSL 194
GS P S P PG G + + + A + PA R +
Sbjct: 238 GSVGPVGPAGPIGSAGPPGFPGAPGPKG------------EIGAVGNAGPAGPAGPRGEV 285
Query: 195 LQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G GP G G G + L P AG P L G
Sbjct: 286 GLPGLSGPVGPPG-NPGANGLTGAKGAAGL---PGVAGAPGLPG 325
Score = 32.7 bits (73), Expect = 0.28
Identities = 42/152 (27%), Positives = 47/152 (30%), Gaps = 32/152 (21%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG------------AADGSPHVS 148
G AG PR R G PPG +G G PG G A V
Sbjct: 33 GPAGDRGPRGER-----GPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVG 87
Query: 149 TSPTP--APGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHST 206
P P G RG A P P P + ++ PA G RGPA
Sbjct: 88 LGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPA---------GARGPAGPP 138
Query: 207 GMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G K DG G+ P GP G
Sbjct: 139 G----KAGEDGHPGKPGRPGERGVVGPQGARG 166
Score = 32.0 bits (71), Expect = 0.48
Identities = 41/148 (27%), Positives = 50/148 (33%), Gaps = 17/148 (11%)
Query: 94 PAPVMSHGEAGTPAPRA-ARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPT 152
P P G+ G + A L RGA PG +G GA PG G G P
Sbjct: 495 PGPKGPTGDPGKNGDKGHAGLAGARGA---PGPDGNNGAQGPPGPQGVQGGKG--EQGPP 549
Query: 153 PAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMET 210
PG +G +P PS K R E G G+RGP +G
Sbjct: 550 GPPGFQG--------LPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAG 601
Query: 211 QKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+G P P P G P + G
Sbjct: 602 PTGPIGSRGPSGP-PGPDGNKGEPGVVG 628
Score = 31.2 bits (69), Expect = 0.82
Identities = 24/74 (32%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 89 GIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVS 148
G+ P P+ G G P AA P+G P GE G G G G A
Sbjct: 85 GVGLGPGPMGLMGPRGPPG--AAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAG 142
Query: 149 TSPTPA-PGRRGGR 161
P PGR G R
Sbjct: 143 EDGHPGKPGRPGER 156
Score = 29.3 bits (64), Expect = 3.1
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 177 SSHKKAARSEPA-ERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPP 235
S ++ R PA +R P G+RGP G DG+ G + P PP GPP
Sbjct: 24 SLQEETVRKGPAGDRGPR----GERGPPGPPGR-------DGEDGPTGPPGPPGPPGPPG 72
Query: 236 LEG 238
L G
Sbjct: 73 LGG 75
Score = 27.7 bits (60), Expect = 9.1
Identities = 35/142 (24%), Positives = 46/142 (32%), Gaps = 19/142 (13%)
Query: 101 GEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRG 159
G AG P +R P G P G+ GR G G G ++ + P
Sbjct: 412 GRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLP 471
Query: 160 GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQG 219
G + R P+ AR EP ++ G +GP G K G
Sbjct: 472 GIDGRPGPI----------GPAGARGEPG----NIGFPGPKGPTGDPGKNGDK-GHAGLA 516
Query: 220 GRSPLPLPP---STAGPPPLEG 238
G P P GPP +G
Sbjct: 517 GARGAPGPDGNNGAQGPPGPQG 538
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 45.4 bits (106), Expect = 4e-05
Identities = 45/160 (28%), Positives = 56/160 (35%), Gaps = 21/160 (13%)
Query: 90 IWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHV-- 147
I R+ P P P R A A PPP R G P + D +P +
Sbjct: 277 IHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQ 336
Query: 148 -------STSPTPAPGRRGGREARLRPMPTP--SWIPVSSHKKAARSEPAERRPSLLQGG 198
ST P P+PGR G P+P P P RS P P + + G
Sbjct: 337 RNLSLSSSTPPLPSPGRSG-------PLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNG 389
Query: 199 QRGPA-HSTGMETQKEAFDG--QGGRSPLPLPPSTAGPPP 235
A +T + D G R PLP +AG PP
Sbjct: 390 STSRALPATPQLPSRSGVDSPRSGPRPPLPPDRPSAGAPP 429
Score = 40.8 bits (94), Expect = 0.001
Identities = 44/179 (24%), Positives = 58/179 (32%), Gaps = 36/179 (20%)
Query: 94 PAPVMS--HGEAGTPAPRAARLGAPRGASPP-PGEEGRAGAWRSPGEAGAADGSPHVSTS 150
P P+ S H P P R +P PP PG G A S ++ + SP +
Sbjct: 191 PRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRP 250
Query: 151 PTPAPGRRG------------------GREARLRPMPTPSWIPVSSHKKAARSE------ 186
P P R REA P P + PV S + + S
Sbjct: 251 PLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPP 310
Query: 187 --PAERRPSLLQGGQRG-------PAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPL 236
P+ P L G P + + + G PLP PPS PPP+
Sbjct: 311 PPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPV 369
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 45.4 bits (106), Expect = 4e-05
Identities = 45/160 (28%), Positives = 56/160 (35%), Gaps = 21/160 (13%)
Query: 90 IWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHV-- 147
I R+ P P P R A A PPP R G P + D +P +
Sbjct: 277 IHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQ 336
Query: 148 -------STSPTPAPGRRGGREARLRPMPTP--SWIPVSSHKKAARSEPAERRPSLLQGG 198
ST P P+PGR G P+P P P RS P P + + G
Sbjct: 337 RNLSLSSSTPPLPSPGRSG-------PLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNG 389
Query: 199 QRGPA-HSTGMETQKEAFDG--QGGRSPLPLPPSTAGPPP 235
A +T + D G R PLP +AG PP
Sbjct: 390 STSRALPATPQLPSRSGVDSPRSGPRPPLPPDRPSAGAPP 429
Score = 40.8 bits (94), Expect = 0.001
Identities = 44/179 (24%), Positives = 58/179 (32%), Gaps = 36/179 (20%)
Query: 94 PAPVMS--HGEAGTPAPRAARLGAPRGASPP-PGEEGRAGAWRSPGEAGAADGSPHVSTS 150
P P+ S H P P R +P PP PG G A S ++ + SP +
Sbjct: 191 PRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRP 250
Query: 151 PTPAPGRRG------------------GREARLRPMPTPSWIPVSSHKKAARSE------ 186
P P R REA P P + PV S + + S
Sbjct: 251 PLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPP 310
Query: 187 --PAERRPSLLQGGQRG-------PAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPL 236
P+ P L G P + + + G PLP PPS PPP+
Sbjct: 311 PPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPV 369
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 45.1 bits (105), Expect = 6e-05
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 25/153 (16%)
Query: 101 GEAGTPAPRAARLGAP--RGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPA-PGR 157
G+ G R +G P RG P G +GR G PG G + P PGR
Sbjct: 662 GDIGVKGDRG-EVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGR 720
Query: 158 RGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMETQK 212
+G + + P P +S +K AR + P +G GQRGP +TG K
Sbjct: 721 QGPKGSLGFP-----GFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAK 775
Query: 213 EAFDGQGGRSP-----LPLP------PSTAGPP 234
G G P LP P P GPP
Sbjct: 776 GTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPP 808
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 28/148 (18%)
Query: 101 GEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAG-----AADGSPHVSTSPTPA 154
GE G P P+ P+G PPG++G G GE G G P V P A
Sbjct: 788 GERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGV-VGPQGA 846
Query: 155 PGRRGGREARLRP----MPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMET 210
G G R P P +P ++ K+ + +P G+ GPA G
Sbjct: 847 AGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP----GKDGPAGLRG--- 899
Query: 211 QKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
F G+ G P TAG P L+G
Sbjct: 900 ----FPGERGL------PGTAGGPGLKG 917
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/143 (29%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 101 GEAGTPAPRAARLGAPRGASP---PPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGR 157
G+ G P P + P+GA+ P GE G G PGE G + T P P
Sbjct: 830 GKTGPPGPPG--VVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPG 887
Query: 158 RGGRE--ARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAF 215
G++ A LR P +P ++ + PS G GPA S G +
Sbjct: 888 APGKDGPAGLRGFPGERGLPGTAGGPGLKGNEG---PS----GPPGPAGSPG----ERGA 936
Query: 216 DGQGGRSPLPLPPSTAGPPPLEG 238
G GG P P GPP G
Sbjct: 937 AGSGGPIGPPGRPGPQGPPGAAG 959
Score = 38.9 bits (89), Expect = 0.004
Identities = 36/118 (30%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTP 153
P P G G P+ + LG P+G PPG++G G PG GA PH P
Sbjct: 535 PGPPGVRGMDGPQGPKGS-LG-PQGEPGPPGQQGTPGTQGLPGPQGAI--GPHGEKGPQG 590
Query: 154 APGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGME 209
PG G MP P K+ + PS QG G GP G++
Sbjct: 591 KPGLPG--------MPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVD 640
Score = 37.7 bits (86), Expect = 0.009
Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 9/143 (6%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
GE G P + + +G PPG G G PG AG ADG P + P G +G
Sbjct: 1001 GEVGDPGQKGTK--GNKGEHGPPGPPGPIGPVGQPGAAG-ADGEPG-ARGPQGHFGAKGD 1056
Query: 161 REAR-LRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQKEAFDG 217
R P P + + E + P G G RGPA G + + G
Sbjct: 1057 EGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGG 1116
Query: 218 QGGRSP--LPLPPSTAGPPPLEG 238
G P P +G P ++G
Sbjct: 1117 VGNLGPPGEKGEPGESGSPGIQG 1139
Score = 35.4 bits (80), Expect = 0.044
Identities = 40/139 (28%), Positives = 47/139 (33%), Gaps = 34/139 (24%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADG-SPHVSTSPTPAPGRRG 159
GE G P + P G + PPG G+ G SPG G G APG+ G
Sbjct: 1208 GEDGEPGQPGSP--GPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1265
Query: 160 GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQG 219
PV A + P G RG S G + + A GQ
Sbjct: 1266 ---------------PVGPAGPAGKPGP---------DGLRGLPGSVGQQGRPGA-TGQA 1300
Query: 220 GRSPLPLPPSTAGPPPLEG 238
G PP GPP L G
Sbjct: 1301 G------PPGPVGPPGLPG 1313
Score = 34.7 bits (78), Expect = 0.075
Identities = 36/138 (26%), Positives = 47/138 (34%), Gaps = 15/138 (10%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
GE G PR R +G S PGE G G G+ G V P P GG
Sbjct: 1139 GEPGVKGPRGER--GEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1196
Query: 161 REARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMETQKEAF 215
+ + +P P+ G G+RGPA S G E ++
Sbjct: 1197 PRGQ-------DGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1249
Query: 216 DGQGGRSPLPLPPSTAGP 233
+G + P T GP
Sbjct: 1250 GAKGDPGAIGAPGKT-GP 1266
Score = 34.3 bits (77), Expect = 0.097
Identities = 47/174 (27%), Positives = 56/174 (32%), Gaps = 35/174 (20%)
Query: 93 DPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGS-------- 144
D PV++ EA A A RG P G GR G PG G S
Sbjct: 376 DKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGP 435
Query: 145 --PHVSTSPTPAPGRRGGREA-RLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRG 201
P T P GRRG A R MP + P E+ G RG
Sbjct: 436 RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEK-------GHRG 488
Query: 202 PAHSTGM-----ETQKEAFDGQGGRSPLP------------LPPSTAGPPPLEG 238
+ G+ E + DG+ G LP PP GPP + G
Sbjct: 489 DTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRG 542
Score = 33.1 bits (74), Expect = 0.22
Identities = 40/144 (27%), Positives = 50/144 (34%), Gaps = 22/144 (15%)
Query: 104 GTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--------AADGSPHVSTSPTPAP 155
G P P P G PPG +G G PGE G +DG+P + P
Sbjct: 313 GPPGPEG-----PAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLP 367
Query: 156 GRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMET 210
R G P+ + + AR A R P G G G S G++
Sbjct: 368 FRFGSGGGDKGPVVAAQEAQAQAILQQARL--ALRGPPGPMGYTGRPGPLGQPGSPGLKG 425
Query: 211 QKEAFDGQGGRSPLPL--PPSTAG 232
+ QG R P L PP AG
Sbjct: 426 ESGDLGPQGPRGPQGLTGPPGKAG 449
Score = 31.2 bits (69), Expect = 0.82
Identities = 41/163 (25%), Positives = 53/163 (32%), Gaps = 9/163 (5%)
Query: 80 GAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG 139
G ++ GI +P PV GE G P R G P G+ PG G + +G
Sbjct: 319 GPAGLIGPPGIQGNPGPVGDPGERGPP----GRAGLP-GSDGAPGPPGTSLMLPFRFGSG 373
Query: 140 AADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPS--LLQG 197
D P V+ A LR P P P + S L
Sbjct: 374 GGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQ 433
Query: 198 GQRGPAHSTGM--ETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G RGP TG + + G G +P P G +G
Sbjct: 434 GPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDG 476
Score = 30.8 bits (68), Expect = 1.1
Identities = 53/188 (28%), Positives = 65/188 (34%), Gaps = 43/188 (22%)
Query: 89 GIWRDPAPVMSHGEAGTPAPR-AARLGAPRGASPPPGEEG---RAGAWRSPGEAG----- 139
G+ + P G AG+P R AA G P G PG +G AG PGE G
Sbjct: 914 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPT 973
Query: 140 AADGSPHVSTSPTPA-----------------PGRRG--GREARLRPMPTPSWI-PVSSH 179
DG P PA PG++G G + P P I PV
Sbjct: 974 GRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQP 1033
Query: 180 KKA-ARSEPAERRPSLLQG--------GQRGPAHSTGME-----TQKEAFDGQGGRSPLP 225
A A EP R P G G GP G++ + ++ G G P
Sbjct: 1034 GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPP 1093
Query: 226 LPPSTAGP 233
PP GP
Sbjct: 1094 GPPGPRGP 1101
Score = 30.0 bits (66), Expect = 1.8
Identities = 38/146 (26%), Positives = 47/146 (32%), Gaps = 18/146 (12%)
Query: 94 PAPVMSHGEAGTPAPRAARLGA----PRGASPPPGEEGRAGAWRSPGEAGAADGSPHVST 149
P P G G P+ G P G PGE G G PG G
Sbjct: 1096 PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGE 1155
Query: 150 SPTPA-PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGM 208
S P PG G + P + PV P + P G+ GP G
Sbjct: 1156 SGQPGEPGPPGPKGPTGDDGPKGNPGPVGF--------PGDPGPP----GEGGPRGQDGA 1203
Query: 209 ETQKEAFDGQGGRSPLPLPPSTAGPP 234
+ + DG+ G+ P P GPP
Sbjct: 1204 KGDR-GEDGEPGQPGSPGPTGENGPP 1228
Score = 28.1 bits (61), Expect = 7.0
Identities = 41/138 (29%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 99 SHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRR 158
S G+ G P A P G PPG G G + GE G P + P PG +
Sbjct: 1287 SVGQQGRPG--ATGQAGPPGPVGPPGLPGLRGDAGAKGE----KGHPGLIGLIGP-PGEQ 1339
Query: 159 GGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAF--D 216
G E R +P P P +K P P + GG G G + K A
Sbjct: 1340 G--EKGDRGLPGPQGSP---GQKGEMGIPGASGP-IGPGGPPGLPGPAGPKGAKGATGPG 1393
Query: 217 GQGGRSPLPLPPSTAGPP 234
G G + PP GPP
Sbjct: 1394 GPKGEKGVQGPPGHPGPP 1411
Score = 28.1 bits (61), Expect = 7.0
Identities = 30/115 (26%), Positives = 38/115 (33%), Gaps = 14/115 (12%)
Query: 94 PAPVMSHGEAGTPAPRAAR--LGAPR--GASPPPGEEGRAGAWRSPGEAGAADGSPHVST 149
P PV G G A+ G P G PPGE+G G PG G+ +
Sbjct: 1303 PGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGI 1362
Query: 150 SPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAH 204
P GG P +P + K A+ P +G Q P H
Sbjct: 1363 PGASGPIGPGG----------PPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGH 1407
Score = 27.7 bits (60), Expect = 9.1
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 89 GIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG 139
GI P+ G G P P + +GA+ P G +G G PG G
Sbjct: 1361 GIPGASGPIGPGGPPGLPGPAGPK--GAKGATGPGGPKGEKGVQGPPGHPG 1409
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 45.1 bits (105), Expect = 6e-05
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 25/153 (16%)
Query: 101 GEAGTPAPRAARLGAP--RGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPA-PGR 157
G+ G R +G P RG P G +GR G PG G + P PGR
Sbjct: 641 GDIGVKGDRG-EVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGR 699
Query: 158 RGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMETQK 212
+G + + P P +S +K AR + P +G GQRGP +TG K
Sbjct: 700 QGPKGSLGFP-----GFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAK 754
Query: 213 EAFDGQGGRSP-----LPLP------PSTAGPP 234
G G P LP P P GPP
Sbjct: 755 GTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPP 787
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 28/148 (18%)
Query: 101 GEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAG-----AADGSPHVSTSPTPA 154
GE G P P+ P+G PPG++G G GE G G P V P A
Sbjct: 767 GERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGV-VGPQGA 825
Query: 155 PGRRGGREARLRP----MPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMET 210
G G R P P +P ++ K+ + +P G+ GPA G
Sbjct: 826 AGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP----GKDGPAGLRG--- 878
Query: 211 QKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
F G+ G P TAG P L+G
Sbjct: 879 ----FPGERGL------PGTAGGPGLKG 896
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/143 (29%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 101 GEAGTPAPRAARLGAPRGASP---PPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGR 157
G+ G P P + P+GA+ P GE G G PGE G + T P P
Sbjct: 809 GKTGPPGPPG--VVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPG 866
Query: 158 RGGRE--ARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAF 215
G++ A LR P +P ++ + PS G GPA S G +
Sbjct: 867 APGKDGPAGLRGFPGERGLPGTAGGPGLKGNEG---PS----GPPGPAGSPG----ERGA 915
Query: 216 DGQGGRSPLPLPPSTAGPPPLEG 238
G GG P P GPP G
Sbjct: 916 AGSGGPIGPPGRPGPQGPPGAAG 938
Score = 38.9 bits (89), Expect = 0.004
Identities = 36/118 (30%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTP 153
P P G G P+ + LG P+G PPG++G G PG GA PH P
Sbjct: 514 PGPPGVRGMDGPQGPKGS-LG-PQGEPGPPGQQGTPGTQGLPGPQGAI--GPHGEKGPQG 569
Query: 154 APGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGME 209
PG G MP P K+ + PS QG G GP G++
Sbjct: 570 KPGLPG--------MPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVD 619
Score = 37.7 bits (86), Expect = 0.009
Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 9/143 (6%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
GE G P + + +G PPG G G PG AG ADG P + P G +G
Sbjct: 980 GEVGDPGQKGTK--GNKGEHGPPGPPGPIGPVGQPGAAG-ADGEPG-ARGPQGHFGAKGD 1035
Query: 161 REAR-LRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQKEAFDG 217
R P P + + E + P G G RGPA G + + G
Sbjct: 1036 EGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGG 1095
Query: 218 QGGRSP--LPLPPSTAGPPPLEG 238
G P P +G P ++G
Sbjct: 1096 VGNLGPPGEKGEPGESGSPGIQG 1118
Score = 35.4 bits (80), Expect = 0.044
Identities = 40/139 (28%), Positives = 47/139 (33%), Gaps = 34/139 (24%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADG-SPHVSTSPTPAPGRRG 159
GE G P + P G + PPG G+ G SPG G G APG+ G
Sbjct: 1187 GEDGEPGQPGSP--GPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1244
Query: 160 GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQG 219
PV A + P G RG S G + + A GQ
Sbjct: 1245 ---------------PVGPAGPAGKPGP---------DGLRGLPGSVGQQGRPGA-TGQA 1279
Query: 220 GRSPLPLPPSTAGPPPLEG 238
G PP GPP L G
Sbjct: 1280 G------PPGPVGPPGLPG 1292
Score = 34.7 bits (78), Expect = 0.075
Identities = 36/138 (26%), Positives = 47/138 (34%), Gaps = 15/138 (10%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
GE G PR R +G S PGE G G G+ G V P P GG
Sbjct: 1118 GEPGVKGPRGER--GEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1175
Query: 161 REARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMETQKEAF 215
+ + +P P+ G G+RGPA S G E ++
Sbjct: 1176 PRGQ-------DGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1228
Query: 216 DGQGGRSPLPLPPSTAGP 233
+G + P T GP
Sbjct: 1229 GAKGDPGAIGAPGKT-GP 1245
Score = 34.3 bits (77), Expect = 0.097
Identities = 47/174 (27%), Positives = 56/174 (32%), Gaps = 35/174 (20%)
Query: 93 DPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGS-------- 144
D PV++ EA A A RG P G GR G PG G S
Sbjct: 355 DKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGP 414
Query: 145 --PHVSTSPTPAPGRRGGREA-RLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRG 201
P T P GRRG A R MP + P E+ G RG
Sbjct: 415 RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEK-------GHRG 467
Query: 202 PAHSTGM-----ETQKEAFDGQGGRSPLP------------LPPSTAGPPPLEG 238
+ G+ E + DG+ G LP PP GPP + G
Sbjct: 468 DTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRG 521
Score = 33.1 bits (74), Expect = 0.22
Identities = 40/144 (27%), Positives = 50/144 (34%), Gaps = 22/144 (15%)
Query: 104 GTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--------AADGSPHVSTSPTPAP 155
G P P P G PPG +G G PGE G +DG+P + P
Sbjct: 292 GPPGPEG-----PAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLP 346
Query: 156 GRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMET 210
R G P+ + + AR A R P G G G S G++
Sbjct: 347 FRFGSGGGDKGPVVAAQEAQAQAILQQARL--ALRGPPGPMGYTGRPGPLGQPGSPGLKG 404
Query: 211 QKEAFDGQGGRSPLPL--PPSTAG 232
+ QG R P L PP AG
Sbjct: 405 ESGDLGPQGPRGPQGLTGPPGKAG 428
Score = 31.2 bits (69), Expect = 0.82
Identities = 41/163 (25%), Positives = 53/163 (32%), Gaps = 9/163 (5%)
Query: 80 GAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG 139
G ++ GI +P PV GE G P R G P G+ PG G + +G
Sbjct: 298 GPAGLIGPPGIQGNPGPVGDPGERGPP----GRAGLP-GSDGAPGPPGTSLMLPFRFGSG 352
Query: 140 AADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPS--LLQG 197
D P V+ A LR P P P + S L
Sbjct: 353 GGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQ 412
Query: 198 GQRGPAHSTGM--ETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G RGP TG + + G G +P P G +G
Sbjct: 413 GPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDG 455
Score = 30.8 bits (68), Expect = 1.1
Identities = 53/188 (28%), Positives = 65/188 (34%), Gaps = 43/188 (22%)
Query: 89 GIWRDPAPVMSHGEAGTPAPR-AARLGAPRGASPPPGEEG---RAGAWRSPGEAG----- 139
G+ + P G AG+P R AA G P G PG +G AG PGE G
Sbjct: 893 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPT 952
Query: 140 AADGSPHVSTSPTPA-----------------PGRRG--GREARLRPMPTPSWI-PVSSH 179
DG P PA PG++G G + P P I PV
Sbjct: 953 GRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQP 1012
Query: 180 KKA-ARSEPAERRPSLLQG--------GQRGPAHSTGME-----TQKEAFDGQGGRSPLP 225
A A EP R P G G GP G++ + ++ G G P
Sbjct: 1013 GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPP 1072
Query: 226 LPPSTAGP 233
PP GP
Sbjct: 1073 GPPGPRGP 1080
Score = 30.0 bits (66), Expect = 1.8
Identities = 38/146 (26%), Positives = 47/146 (32%), Gaps = 18/146 (12%)
Query: 94 PAPVMSHGEAGTPAPRAARLGA----PRGASPPPGEEGRAGAWRSPGEAGAADGSPHVST 149
P P G G P+ G P G PGE G G PG G
Sbjct: 1075 PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGE 1134
Query: 150 SPTPA-PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGM 208
S P PG G + P + PV P + P G+ GP G
Sbjct: 1135 SGQPGEPGPPGPKGPTGDDGPKGNPGPVGF--------PGDPGPP----GEGGPRGQDGA 1182
Query: 209 ETQKEAFDGQGGRSPLPLPPSTAGPP 234
+ + DG+ G+ P P GPP
Sbjct: 1183 KGDR-GEDGEPGQPGSPGPTGENGPP 1207
Score = 28.1 bits (61), Expect = 7.0
Identities = 41/138 (29%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 99 SHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRR 158
S G+ G P A P G PPG G G + GE G P + P PG +
Sbjct: 1266 SVGQQGRPG--ATGQAGPPGPVGPPGLPGLRGDAGAKGE----KGHPGLIGLIGP-PGEQ 1318
Query: 159 GGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAF--D 216
G E R +P P P +K P P + GG G G + K A
Sbjct: 1319 G--EKGDRGLPGPQGSP---GQKGEMGIPGASGP-IGPGGPPGLPGPAGPKGAKGATGPG 1372
Query: 217 GQGGRSPLPLPPSTAGPP 234
G G + PP GPP
Sbjct: 1373 GPKGEKGVQGPPGHPGPP 1390
Score = 28.1 bits (61), Expect = 7.0
Identities = 30/115 (26%), Positives = 38/115 (33%), Gaps = 14/115 (12%)
Query: 94 PAPVMSHGEAGTPAPRAAR--LGAPR--GASPPPGEEGRAGAWRSPGEAGAADGSPHVST 149
P PV G G A+ G P G PPGE+G G PG G+ +
Sbjct: 1282 PGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGI 1341
Query: 150 SPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAH 204
P GG P +P + K A+ P +G Q P H
Sbjct: 1342 PGASGPIGPGG----------PPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGH 1386
Score = 27.7 bits (60), Expect = 9.1
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 89 GIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG 139
GI P+ G G P P + +GA+ P G +G G PG G
Sbjct: 1340 GIPGASGPIGPGGPPGLPGPAGPK--GAKGATGPGGPKGEKGVQGPPGHPG 1388
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 45.1 bits (105), Expect = 6e-05
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 25/153 (16%)
Query: 101 GEAGTPAPRAARLGAP--RGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPA-PGR 157
G+ G R +G P RG P G +GR G PG G + P PGR
Sbjct: 748 GDIGVKGDRG-EVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGR 806
Query: 158 RGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMETQK 212
+G + + P P +S +K AR + P +G GQRGP +TG K
Sbjct: 807 QGPKGSLGFP-----GFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAK 861
Query: 213 EAFDGQGGRSP-----LPLP------PSTAGPP 234
G G P LP P P GPP
Sbjct: 862 GTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPP 894
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 28/148 (18%)
Query: 101 GEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAG-----AADGSPHVSTSPTPA 154
GE G P P+ P+G PPG++G G GE G G P V P A
Sbjct: 874 GERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGV-VGPQGA 932
Query: 155 PGRRGGREARLRP----MPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMET 210
G G R P P +P ++ K+ + +P G+ GPA G
Sbjct: 933 AGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP----GKDGPAGLRG--- 985
Query: 211 QKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
F G+ G P TAG P L+G
Sbjct: 986 ----FPGERGL------PGTAGGPGLKG 1003
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/143 (29%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 101 GEAGTPAPRAARLGAPRGASP---PPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGR 157
G+ G P P + P+GA+ P GE G G PGE G + T P P
Sbjct: 916 GKTGPPGPPG--VVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPG 973
Query: 158 RGGRE--ARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAF 215
G++ A LR P +P ++ + PS G GPA S G +
Sbjct: 974 APGKDGPAGLRGFPGERGLPGTAGGPGLKGNEG---PS----GPPGPAGSPG----ERGA 1022
Query: 216 DGQGGRSPLPLPPSTAGPPPLEG 238
G GG P P GPP G
Sbjct: 1023 AGSGGPIGPPGRPGPQGPPGAAG 1045
Score = 38.9 bits (89), Expect = 0.004
Identities = 36/118 (30%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTP 153
P P G G P+ + LG P+G PPG++G G PG GA PH P
Sbjct: 621 PGPPGVRGMDGPQGPKGS-LG-PQGEPGPPGQQGTPGTQGLPGPQGAI--GPHGEKGPQG 676
Query: 154 APGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGME 209
PG G MP P K+ + PS QG G GP G++
Sbjct: 677 KPGLPG--------MPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVD 726
Score = 37.7 bits (86), Expect = 0.009
Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 9/143 (6%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
GE G P + + +G PPG G G PG AG ADG P + P G +G
Sbjct: 1087 GEVGDPGQKGTK--GNKGEHGPPGPPGPIGPVGQPGAAG-ADGEPG-ARGPQGHFGAKGD 1142
Query: 161 REAR-LRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQKEAFDG 217
R P P + + E + P G G RGPA G + + G
Sbjct: 1143 EGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGG 1202
Query: 218 QGGRSP--LPLPPSTAGPPPLEG 238
G P P +G P ++G
Sbjct: 1203 VGNLGPPGEKGEPGESGSPGIQG 1225
Score = 35.4 bits (80), Expect = 0.044
Identities = 40/139 (28%), Positives = 47/139 (33%), Gaps = 34/139 (24%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADG-SPHVSTSPTPAPGRRG 159
GE G P + P G + PPG G+ G SPG G G APG+ G
Sbjct: 1294 GEDGEPGQPGSP--GPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1351
Query: 160 GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQG 219
PV A + P G RG S G + + A GQ
Sbjct: 1352 ---------------PVGPAGPAGKPGP---------DGLRGLPGSVGQQGRPGA-TGQA 1386
Query: 220 GRSPLPLPPSTAGPPPLEG 238
G PP GPP L G
Sbjct: 1387 G------PPGPVGPPGLPG 1399
Score = 34.7 bits (78), Expect = 0.075
Identities = 36/138 (26%), Positives = 47/138 (34%), Gaps = 15/138 (10%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
GE G PR R +G S PGE G G G+ G V P P GG
Sbjct: 1225 GEPGVKGPRGER--GEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1282
Query: 161 REARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMETQKEAF 215
+ + +P P+ G G+RGPA S G E ++
Sbjct: 1283 PRGQ-------DGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGK 1335
Query: 216 DGQGGRSPLPLPPSTAGP 233
+G + P T GP
Sbjct: 1336 GAKGDPGAIGAPGKT-GP 1352
Score = 34.3 bits (77), Expect = 0.097
Identities = 47/174 (27%), Positives = 56/174 (32%), Gaps = 35/174 (20%)
Query: 93 DPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGS-------- 144
D PV++ EA A A RG P G GR G PG G S
Sbjct: 462 DKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGP 521
Query: 145 --PHVSTSPTPAPGRRGGREA-RLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRG 201
P T P GRRG A R MP + P E+ G RG
Sbjct: 522 RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEK-------GHRG 574
Query: 202 PAHSTGM-----ETQKEAFDGQGGRSPLP------------LPPSTAGPPPLEG 238
+ G+ E + DG+ G LP PP GPP + G
Sbjct: 575 DTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRG 628
Score = 33.1 bits (74), Expect = 0.22
Identities = 40/144 (27%), Positives = 50/144 (34%), Gaps = 22/144 (15%)
Query: 104 GTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--------AADGSPHVSTSPTPAP 155
G P P P G PPG +G G PGE G +DG+P + P
Sbjct: 399 GPPGPEG-----PAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLP 453
Query: 156 GRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMET 210
R G P+ + + AR A R P G G G S G++
Sbjct: 454 FRFGSGGGDKGPVVAAQEAQAQAILQQARL--ALRGPPGPMGYTGRPGPLGQPGSPGLKG 511
Query: 211 QKEAFDGQGGRSPLPL--PPSTAG 232
+ QG R P L PP AG
Sbjct: 512 ESGDLGPQGPRGPQGLTGPPGKAG 535
Score = 31.2 bits (69), Expect = 0.82
Identities = 41/163 (25%), Positives = 53/163 (32%), Gaps = 9/163 (5%)
Query: 80 GAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG 139
G ++ GI +P PV GE G P R G P G+ PG G + +G
Sbjct: 405 GPAGLIGPPGIQGNPGPVGDPGERGPP----GRAGLP-GSDGAPGPPGTSLMLPFRFGSG 459
Query: 140 AADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPS--LLQG 197
D P V+ A LR P P P + S L
Sbjct: 460 GGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQ 519
Query: 198 GQRGPAHSTGM--ETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G RGP TG + + G G +P P G +G
Sbjct: 520 GPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDG 562
Score = 30.8 bits (68), Expect = 1.1
Identities = 53/188 (28%), Positives = 65/188 (34%), Gaps = 43/188 (22%)
Query: 89 GIWRDPAPVMSHGEAGTPAPR-AARLGAPRGASPPPGEEG---RAGAWRSPGEAG----- 139
G+ + P G AG+P R AA G P G PG +G AG PGE G
Sbjct: 1000 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPT 1059
Query: 140 AADGSPHVSTSPTPA-----------------PGRRG--GREARLRPMPTPSWI-PVSSH 179
DG P PA PG++G G + P P I PV
Sbjct: 1060 GRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQP 1119
Query: 180 KKA-ARSEPAERRPSLLQG--------GQRGPAHSTGME-----TQKEAFDGQGGRSPLP 225
A A EP R P G G GP G++ + ++ G G P
Sbjct: 1120 GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPP 1179
Query: 226 LPPSTAGP 233
PP GP
Sbjct: 1180 GPPGPRGP 1187
Score = 30.0 bits (66), Expect = 1.8
Identities = 38/146 (26%), Positives = 47/146 (32%), Gaps = 18/146 (12%)
Query: 94 PAPVMSHGEAGTPAPRAARLGA----PRGASPPPGEEGRAGAWRSPGEAGAADGSPHVST 149
P P G G P+ G P G PGE G G PG G
Sbjct: 1182 PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGE 1241
Query: 150 SPTPA-PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGM 208
S P PG G + P + PV P + P G+ GP G
Sbjct: 1242 SGQPGEPGPPGPKGPTGDDGPKGNPGPVGF--------PGDPGPP----GEGGPRGQDGA 1289
Query: 209 ETQKEAFDGQGGRSPLPLPPSTAGPP 234
+ + DG+ G+ P P GPP
Sbjct: 1290 KGDR-GEDGEPGQPGSPGPTGENGPP 1314
Score = 28.1 bits (61), Expect = 7.0
Identities = 41/138 (29%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 99 SHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRR 158
S G+ G P A P G PPG G G + GE G P + P PG +
Sbjct: 1373 SVGQQGRPG--ATGQAGPPGPVGPPGLPGLRGDAGAKGE----KGHPGLIGLIGP-PGEQ 1425
Query: 159 GGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAF--D 216
G E R +P P P +K P P + GG G G + K A
Sbjct: 1426 G--EKGDRGLPGPQGSP---GQKGEMGIPGASGP-IGPGGPPGLPGPAGPKGAKGATGPG 1479
Query: 217 GQGGRSPLPLPPSTAGPP 234
G G + PP GPP
Sbjct: 1480 GPKGEKGVQGPPGHPGPP 1497
Score = 28.1 bits (61), Expect = 7.0
Identities = 30/115 (26%), Positives = 38/115 (33%), Gaps = 14/115 (12%)
Query: 94 PAPVMSHGEAGTPAPRAAR--LGAPR--GASPPPGEEGRAGAWRSPGEAGAADGSPHVST 149
P PV G G A+ G P G PPGE+G G PG G+ +
Sbjct: 1389 PGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGI 1448
Query: 150 SPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAH 204
P GG P +P + K A+ P +G Q P H
Sbjct: 1449 PGASGPIGPGG----------PPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGH 1493
Score = 27.7 bits (60), Expect = 9.1
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 89 GIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG 139
GI P+ G G P P + +GA+ P G +G G PG G
Sbjct: 1447 GIPGASGPIGPGGPPGLPGPAGPK--GAKGATGPGGPKGEKGVQGPPGHPG 1495
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 45.1 bits (105), Expect = 6e-05
Identities = 49/157 (31%), Positives = 61/157 (38%), Gaps = 23/157 (14%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAP--RGASPPPG---EEGRAGAWRSPGEAG--AADGSPH 146
P P+ GE G ++ + G P G PPG E G+ GA PG G DG+P
Sbjct: 808 PGPLGPIGEKG----KSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPG 863
Query: 147 VSTSPTPAPGRRGGREARLRP-MPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPA 203
+ PG +G + P P P P K P +R QG G GPA
Sbjct: 864 I-------PGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPA 916
Query: 204 HSTGMETQKEAFDGQGGRSP--LPLPPSTAGPPPLEG 238
G + + G R P P PP G P LEG
Sbjct: 917 GVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEG 953
Score = 41.2 bits (95), Expect = 8e-04
Identities = 48/153 (31%), Positives = 56/153 (36%), Gaps = 34/153 (22%)
Query: 101 GEAGTPAPRAAR-----LGAPRGASPPPGEEGRAGAWRSPGEAG-----AADGSPHVSTS 150
G+ G P A+ G P G PPG+ G +G SPGE G G P S
Sbjct: 1244 GKKGPPGEDGAKGSVGPTGLP-GDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGE 1302
Query: 151 P--TPAPGRRG-----GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRG 201
P PG+RG GRE R +K A+ EP P G G RG
Sbjct: 1303 PGAPGPPGKRGPSGHMGREGR-------------EGEKGAKGEPGPDGPPGRTGPMGARG 1349
Query: 202 PAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPP 234
P G E + G G L P GPP
Sbjct: 1350 PPGRVGPEGLR-GIPGPVGEPGLLGAPGQMGPP 1381
Score = 38.1 bits (87), Expect = 0.007
Identities = 40/143 (27%), Positives = 51/143 (35%), Gaps = 26/143 (18%)
Query: 118 GASPPPGEEGRAGAWRSPGEAGAADG-------SPHVSTSPTPAPGRRG-----GREARL 165
G PPGE+G GA PG G A P S PT PG G G + +
Sbjct: 572 GQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNV 631
Query: 166 RPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGM--------ETQKEAF 215
P P P ++ P P L G G++GP + G+
Sbjct: 632 GPPGEPG-PPGQQGNHGSQGLPG---PQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGH 687
Query: 216 DGQGGRSPLPLPPSTAGPPPLEG 238
+G G PP +AGPP G
Sbjct: 688 EGPTGEKGAQGPPGSAGPPGYPG 710
Score = 35.4 bits (80), Expect = 0.044
Identities = 53/178 (29%), Positives = 55/178 (30%), Gaps = 46/178 (25%)
Query: 89 GIWRDPAPVMSHGEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAGAA------ 141
G+ P PV G G A PRG P G GR G PG GA
Sbjct: 485 GLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDT 544
Query: 142 --------DGSP-------------HVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180
DG P HV P P PG G R A P PT
Sbjct: 545 GPKGDRGFDGLPGLPGEKGQRGDFGHVG-QPGP-PGEDGERGAEGPPGPT---------- 592
Query: 181 KAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
EP R LL G RG TG DG G PP GPP +G
Sbjct: 593 -GQAGEPGPR--GLL--GPRGSPGPTG-RPGVTGIDGAPGAKGNVGPPGEPGPPGQQG 644
Score = 35.0 bits (79), Expect = 0.057
Identities = 47/184 (25%), Positives = 61/184 (33%), Gaps = 42/184 (22%)
Query: 87 LAGIWRDPAPVMSHGEAGTP-APRAARLGAPRGASPPPGEEGRAGAWRSPGEAG------ 139
L G P P G G AP A P G PPG++G G+ PG G
Sbjct: 603 LLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPG 662
Query: 140 --AADGSPHV-----STSPTPAPGRRG--GREARLRP--------MPTPSWIPVSSHKKA 182
G+P + S P PG G G + P P P + +S +
Sbjct: 663 EKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRG 722
Query: 183 ARSEPAERRPSLLQG--------------GQRGPAHSTGMETQKEAFDGQGGRSPLPLPP 228
+ E E+ G G GP G E K GQ G++ PP
Sbjct: 723 LQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGPK----GQAGQAGEEGPP 778
Query: 229 STAG 232
+AG
Sbjct: 779 GSAG 782
Score = 35.0 bits (79), Expect = 0.057
Identities = 42/144 (29%), Positives = 57/144 (39%), Gaps = 23/144 (15%)
Query: 101 GEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRG 159
G+ G P PR P+G + GEEG G+ G+ G G P PGR G
Sbjct: 749 GKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLG-VPGLPGY-------PGRPG 800
Query: 160 GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAF---- 215
+ + P P P+ K+ ++ +P L G+RGP S G Q A
Sbjct: 801 PKGSIGFPGPLG---PIGEKGKSGKT----GQPGL--EGERGPPGSRGERGQPGATGQPG 851
Query: 216 -DGQGGRSPLPLPPSTAGPPPLEG 238
G G+ P P G P L+G
Sbjct: 852 PKGDVGQDGAPGIPGEKGLPGLQG 875
Score = 34.7 bits (78), Expect = 0.075
Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLG--APRGASPPPGEEGRAGAWRSPGEAGA-ADG 143
L G+ P P G+ G P P + LG P G + P G++G G SPG G D
Sbjct: 1425 LPGVQGPPGP---KGDPGPPGPIGS-LGHPGPPGVAGPLGQKGSKG---SPGSMGPRGDT 1477
Query: 144 SPHVSTSPTPAPGRRGG--REARLRPMPTP 171
P P AP G R R P+P P
Sbjct: 1478 GPAGPPGPPGAPAELHGLRRRRRFVPVPLP 1507
Score = 33.9 bits (76), Expect = 0.13
Identities = 46/159 (28%), Positives = 58/159 (36%), Gaps = 18/159 (11%)
Query: 94 PAPVMSHGEAGT---PAPRAARLG-APRGASPPPGEEGRAGAWRSPGEAG-----AADGS 144
P P+ G AG P P+ P G G G GA SPGE G G
Sbjct: 964 PGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGL 1023
Query: 145 PHVSTS--PTPAPGRRGGREARLRPMPT-PSWIPVSSHKKAARSEPAERRPSLLQGGQRG 201
P S S P G++G R R P PT IP P PS + G +G
Sbjct: 1024 PGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIP---GPLGPLGPPGAAGPS-GEEGDKG 1079
Query: 202 PAHSTGMETQK--EAFDGQGGRSPLPLPPSTAGPPPLEG 238
+ G + K + G G+ + P GPP +G
Sbjct: 1080 DVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADG 1118
Score = 33.9 bits (76), Expect = 0.13
Identities = 44/167 (26%), Positives = 54/167 (32%), Gaps = 36/167 (21%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG-----------AADGSPHVST 149
G+AG P R P G PPG +G G PG G G P +
Sbjct: 1094 GDAGPPGQPGIR--GPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQG 1151
Query: 150 SPTPAPGRRG--GREARLRPMPTPS--------------WIPVSSHKKAARSEPAERRPS 193
P P PG +G G + P P +P + A E ER
Sbjct: 1152 LPGP-PGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERG-- 1208
Query: 194 LLQGGQRGPAHSTGMETQKEAF--DGQGGRSPLPLPPSTAGPPPLEG 238
G GP + G+ K G G S PP GPP +G
Sbjct: 1209 --DAGDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDG 1253
Score = 31.2 bits (69), Expect = 0.82
Identities = 39/154 (25%), Positives = 51/154 (33%), Gaps = 27/154 (17%)
Query: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPH 146
L G+ P G+ G+ P A PRG P G EG G G+ GA
Sbjct: 1149 LQGLPGPPGEKGEVGDVGSMGPHGAP--GPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGE 1206
Query: 147 VSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAH 204
+ P P G +P P K E + PS G G++GP
Sbjct: 1207 RGDAGDPGPPGAPG-------IPGP---------KGDIGEKGDSGPSGAAGPPGKKGPPG 1250
Query: 205 STGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G + G G + LP G P + G
Sbjct: 1251 EDGAK-------GSVGPTGLPGDLGPPGDPGVSG 1277
Score = 30.0 bits (66), Expect = 1.8
Identities = 38/145 (26%), Positives = 55/145 (37%), Gaps = 21/145 (14%)
Query: 6 TQTRLAQIPEQARFLM--NLLVTDLNTVV--RQVDHNT---MKLTEQRAYEDDDLHGGGE 58
T+T +P L+ + + T LN + R +D ++ + E +A +D+
Sbjct: 291 TETPAPNLPPTPTPLVVTSTVTTGLNATILERSLDPDSGTELGTLETKAAREDEEGDDST 350
Query: 59 LAVQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMS----HGEAGTPAPRAARLG 114
+ R AE P R GAG G +PA + G G P P+
Sbjct: 351 MGPDFRAAEYPSRTQFQIFP-GAGE----KGAKGEPAVIEKGQQFEGPPGAPGPQGVV-- 403
Query: 115 APRGASPPPGEEGRAGAWRSPGEAG 139
G S PPG G G PG AG
Sbjct: 404 ---GPSGPPGPPGFPGDPGPPGPAG 425
Score = 28.9 bits (63), Expect = 4.1
Identities = 43/160 (26%), Positives = 60/160 (37%), Gaps = 25/160 (15%)
Query: 90 IWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVST 149
+ +D AP + GE G P + G P G PPG +G+ G PG+ G G +
Sbjct: 856 VGQDGAPGIP-GEKGLPGLQGPP-GFP-GPKGPPGHQGKDGRPGHPGQRGEL-GFQGQTG 911
Query: 150 SPTPAPGRRG--GREARLRPM-----------PTPSWIPVSSHKKAARSEPAERRPSLLQ 196
P PA G G G+ + P+ P +P ++ A+ E P
Sbjct: 912 PPGPA-GVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPL--- 967
Query: 197 GGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPL 236
G+ GPA G K G G P L P P+
Sbjct: 968 -GKEGPAGLRGFPGPK---GGPGDPGPTGLKGDKGPPGPV 1003
Score = 28.5 bits (62), Expect = 5.3
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRG 159
G+ G P + ++ +G + PPG+ G G PG G ADG A GRRG
Sbjct: 1079 GDVGAPGHKGSK--GDKGDAGPPGQPGIRGPAGHPGPPG-ADG----------AQGRRG 1124
Score = 28.5 bits (62), Expect = 5.3
Identities = 33/118 (27%), Positives = 38/118 (32%), Gaps = 17/118 (14%)
Query: 118 GASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVS 177
G PPGE G G PG G P P P PG G P P +
Sbjct: 1409 GLIGPPGEAGEKGDQGLPG----VQGPPGPKGDPGP-PGPIGS-----LGHPGPPGVAGP 1458
Query: 178 SHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRS---PLPLPPSTAG 232
+K ++ P P G GPA G G R P+PLP G
Sbjct: 1459 LGQKGSKGSPGSMGPR----GDTGPAGPPGPPGAPAELHGLRRRRRFVPVPLPVVEGG 1512
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 45.1 bits (105), Expect = 6e-05
Identities = 49/164 (29%), Positives = 62/164 (37%), Gaps = 25/164 (15%)
Query: 87 LAGIWRDPAPVMS-----HGEAGTPA-PRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA 140
L G+ +P P GE G P P L PRG PPG G GA SPG GA
Sbjct: 775 LKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRG---PPGPTGEKGAQGSPGVKGA 831
Query: 141 AD--GSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAE----RRPSL 194
G P S S P R G++ + TP + + EP E + L
Sbjct: 832 TGPVGPPGASVSGPPG---RDGQQGQTGLRGTPG----EKGPRGEKGEPGECSCPSQGDL 884
Query: 195 LQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+ G G + G+ G G +P PP G P L+G
Sbjct: 885 IFSGMPG---APGLWMGSSWQPGPQGPPGIPGPPGPPGVPGLQG 925
Score = 44.3 bits (103), Expect = 9e-05
Identities = 47/157 (29%), Positives = 59/157 (37%), Gaps = 21/157 (13%)
Query: 87 LAGIWRDPAPVMSHGEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAGAADGSP 145
L GI + S GE G P P + L P G + P GE G G G+ G G P
Sbjct: 1100 LPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGF-QGQP 1158
Query: 146 HVSTSPTPA--PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPA 203
P P PG+ G P +A + R PS L G GP
Sbjct: 1159 GFPGPPGPPGFPGKVGS--------------PGPPGPQAEKGSEGIRGPSGLPGSP-GPP 1203
Query: 204 HSTGMETQK--EAFDGQGGRSPLPLPPSTAGPPPLEG 238
G++ + DG+ G+ L P AGPP L G
Sbjct: 1204 GPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMG 1240
Score = 39.3 bits (90), Expect = 0.003
Identities = 42/154 (27%), Positives = 54/154 (35%), Gaps = 21/154 (13%)
Query: 82 GRVVRLAGIWRDPAPVMSHGEAGTPAP-RAARLGAPRGASPPPGEEGRAGAWRSPGEAGA 140
G V +AG P P G G P + + G P G PPG +G G PG G
Sbjct: 732 GTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLP-GVQGPPGLKGVQG---EPGPPGR 787
Query: 141 ADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQR 200
P PG +G +P P P + +K A+ P + G
Sbjct: 788 GVQGPQGEPGAPGLPGIQG--------LPGPRGPPGPTGEKGAQGSPGVK-------GAT 832
Query: 201 GPAHSTGMETQ-KEAFDGQGGRSPLPLPPSTAGP 233
GP G DGQ G++ L P GP
Sbjct: 833 GPVGPPGASVSGPPGRDGQQGQTGLRGTPGEKGP 866
Score = 38.9 bits (89), Expect = 0.004
Identities = 39/142 (27%), Positives = 51/142 (35%), Gaps = 29/142 (20%)
Query: 101 GEAGTPAPRAAR----LGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPG 156
G AG P + + P G+ PPG G AG + GE P PA
Sbjct: 590 GRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGE----------PCEPCPALS 639
Query: 157 RRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFD 216
+ R+ +P PS + EP P G++G A G++ QK
Sbjct: 640 NLQDGDVRVVALPGPS---------GEKGEPGP--PGFGLPGKQGKAGERGLKGQK---- 684
Query: 217 GQGGRSPLPLPPSTAGPPPLEG 238
G G P P T G P L G
Sbjct: 685 GDAGNPGDPGTPGTTGRPGLSG 706
Score = 35.8 bits (81), Expect = 0.033
Identities = 48/172 (27%), Positives = 58/172 (33%), Gaps = 29/172 (16%)
Query: 89 GIWRDPAPVMSHGEAGTPAPRAAR----LGAPRG---ASPPPGEEGRAGAWRSPGEAGAA 141
G+ DP P G G P + L P+G PPG GR GA PG G
Sbjct: 1225 GLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQ 1284
Query: 142 D--------GSPHVSTSPTP----APGRRGGREAR-------LRPMPTPSWIPVSSHKKA 182
G P P P A G +G R A L P P P +
Sbjct: 1285 GRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPG 1344
Query: 183 ARSEPAERRPSLLQG--GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAG 232
+ P QG G GP G QK G+ GR+ +P P +G
Sbjct: 1345 TDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQK-GQAGEKGRAGMPGGPGKSG 1395
Score = 35.0 bits (79), Expect = 0.057
Identities = 42/133 (31%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 115 APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTP----APGRRG--GREARLRPM 168
AP G GE G G S GE GA G+ V SP A G +G G L
Sbjct: 331 APSGPKGGKGERGLPGPPGSKGEKGAR-GNDCVRISPDAPLQCAEGPKGEKGESGAL--- 386
Query: 169 PTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMETQK--EAFDGQGGR 221
PS +P S+ +K + E + + G G+ G G + QK F G G
Sbjct: 387 -GPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGL 445
Query: 222 SPLPLPPSTAGPP 234
+ P PP GPP
Sbjct: 446 AGEPGPPGLPGPP 458
Score = 34.3 bits (77), Expect = 0.097
Identities = 43/165 (26%), Positives = 57/165 (34%), Gaps = 30/165 (18%)
Query: 94 PAPVMSHGEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAG-----AADGSPHV 147
P V S G G R L +G PPG+ G GA PG G GS
Sbjct: 1056 PGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGE 1115
Query: 148 STSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG---------- 197
P P PG G +P P ++ + E+ QG
Sbjct: 1116 KGEPGP-PGSEG--------LPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGP 1166
Query: 198 ----GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+ G G + +K + +G G S LP P GPP ++G
Sbjct: 1167 PGFPGKVGSPGPPGPQAEKGS-EGIRGPSGLPGSPGPPGPPGIQG 1210
Score = 32.0 bits (71), Expect = 0.48
Identities = 40/149 (26%), Positives = 54/149 (36%), Gaps = 38/149 (25%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--AADGSPHVSTSPTPAPGRR 158
GE G P P L +G + G +G+ G +PG+ G G P +S PG +
Sbjct: 656 GEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGE----PGVQ 711
Query: 159 GGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG---------GQRGPAHSTGME 209
G + K + + PS LQG GQ GP G E
Sbjct: 712 G-----------------PAGPKGEKGDGCTACPS-LQGTVTDMAGRPGQPGPKGEQGPE 753
Query: 210 TQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+ G+ P P GPP L+G
Sbjct: 754 GV-----GRPGKPGQPGLPGVQGPPGLKG 777
Score = 31.6 bits (70), Expect = 0.63
Identities = 42/178 (23%), Positives = 61/178 (34%), Gaps = 41/178 (23%)
Query: 101 GEAGTPAPRAARL-GAPRGASPPPGEEGRAGAWRSPGE--AGAADGSPHVS--------- 148
G G P P L G P PPG +G G+ PG+ G G P V
Sbjct: 450 GPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGDPCEV 509
Query: 149 ------------------------TSPTPA---PGRRGGREARLRPMPTPSWIPVSSHKK 181
P PA PG +G + + P + S + + H
Sbjct: 510 CPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLV 569
Query: 182 AARSEPAE-RRPSLLQGGQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
++ + P G G A G++ +K F G+ G + P PP GP ++G
Sbjct: 570 SSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNF-GEAGPAGSPGPPGPVGPAGIKG 626
Score = 31.6 bits (70), Expect = 0.63
Identities = 41/129 (31%), Positives = 46/129 (35%), Gaps = 22/129 (17%)
Query: 113 LGAPRGASPPPGEEGRAGAWRSPGEAG--AADGSPHVSTSPTPAPGRRGGRE----ARLR 166
L P G GEEG G SPG G G P SP PG +G R +
Sbjct: 1022 LPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSP-GLPGLQGERGLTGLTGDK 1080
Query: 167 PMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQKEAFDGQGGRSPL 224
P P P P P L G G+RG S G ++ G G L
Sbjct: 1081 GEPGPPGQP---------GYPGATGPPGLPGIKGERGYTGSAG----EKGEPGPPGSEGL 1127
Query: 225 PLPPSTAGP 233
P PP AGP
Sbjct: 1128 PGPPGPAGP 1136
Score = 29.6 bits (65), Expect = 2.4
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAP 155
P G G P P+ A G GE+GRAG PG++G S P P
Sbjct: 1354 PPGKQGFYGPPGPKGDPGAA--GQKGQAGEKGRAGMPGGPGKSG--------SMGPVGPP 1403
Query: 156 GRRGGREARLRPMPTPS 172
G G R P P+ S
Sbjct: 1404 GPAGERGHPGAPGPSGS 1420
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 44.7 bits (104), Expect = 7e-05
Identities = 49/184 (26%), Positives = 58/184 (31%), Gaps = 47/184 (25%)
Query: 94 PAPVMSHGEAGTPAPRAAR----------LGAPRGASPPPGEEGRAGAWRSPGEAGAADG 143
P P S GE+G P P P+G PG+ G G PG G
Sbjct: 551 PGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGK 610
Query: 144 SPHVSTSPTPAPGRRGGREARLRPMPTPSWI---------------------------PV 176
+ P P GG + P P P + P
Sbjct: 611 NGETGPQGPPGPTGPGGDKGDTGP-PGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPG 669
Query: 177 SSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPP 234
+ K P ER P L G G RG A G E G+G P P PP AG P
Sbjct: 670 APGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPE------GGKGAAGP-PGPPGAAGTP 722
Query: 235 PLEG 238
L+G
Sbjct: 723 GLQG 726
Score = 44.3 bits (103), Expect = 9e-05
Identities = 49/168 (29%), Positives = 61/168 (36%), Gaps = 35/168 (20%)
Query: 94 PAPVMSHGEAGTP-------APRAARLGAPRGASPPPGEEGRAGAWRSPGEAG----AAD 142
P P S G+ G P AP + + P+G + PGE+G GA PG G A
Sbjct: 893 PGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGI 952
Query: 143 GSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG----- 197
P PG RG P P + S K A ER P QG
Sbjct: 953 TGARGLAGPPGMPGPRGS--------PGPQGVKGESGKPGANGLSGERGPPGPQGLPGLA 1004
Query: 198 ------GQRGPAHSTGMETQKEAFDGQGGR----SP-LPLPPSTAGPP 234
G+ G S G+ + + G+G R SP P P GPP
Sbjct: 1005 GTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPP 1052
Score = 43.9 bits (102), Expect = 1e-04
Identities = 48/144 (33%), Positives = 56/144 (38%), Gaps = 23/144 (15%)
Query: 101 GEAGTPAPRA--ARLGAP--RGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPG 156
G+AG P R GAP RG + PPG EG GA PG GAA G+P + PG
Sbjct: 675 GDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAA-GTPGLQ----GMPG 729
Query: 157 RRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQKEA 214
RGG + P P A P + P G G GPA G +
Sbjct: 730 ERGGLGS-----PGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDK----- 779
Query: 215 FDGQGGRSPLPLPPSTAGPPPLEG 238
G+GG LP G P G
Sbjct: 780 --GEGGAPGLPGIAGPRGSPGERG 801
Score = 40.8 bits (94), Expect = 0.001
Identities = 45/140 (32%), Positives = 51/140 (36%), Gaps = 24/140 (17%)
Query: 101 GEAGTPAPRAARLGAPRGASP--PPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRR 158
GE G P G P G+ P PPG +G G SPG GAA G P P P PG
Sbjct: 834 GEGGPPGVA----GPPGGSGPAGPPGPQGVKGERGSPGGPGAA-GFPGARGLPGP-PGSN 887
Query: 159 GGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEAFDGQ 218
G P P P S K PA + G GP G +K + Q
Sbjct: 888 GN--------PGPPG-PSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQ 938
Query: 219 GGRSPLPLPPSTAGPPPLEG 238
G PP GP + G
Sbjct: 939 G-------PPGAPGPLGIAG 951
Score = 40.4 bits (93), Expect = 0.001
Identities = 48/161 (29%), Positives = 61/161 (37%), Gaps = 27/161 (16%)
Query: 94 PAPVMSHGEAGTP-APRAARLGAPRGASPP---------PGEEGRAGAWRSPGEAGAADG 143
P P GE G P A PRG + P PG++G GA PG AG G
Sbjct: 737 PGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPR-G 795
Query: 144 SPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----G 198
SP T PG G A P + P ++ A E E P + G G
Sbjct: 796 SPG-ERGETGPPGPAGFPGA-----PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSG 849
Query: 199 QRGPAHSTGMETQKEAFDGQG-----GRSPLPLPPSTAGPP 234
GP G++ ++ + G G G LP PP + G P
Sbjct: 850 PAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNP 890
Score = 38.1 bits (87), Expect = 0.007
Identities = 45/142 (31%), Positives = 53/142 (37%), Gaps = 16/142 (11%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--AADGSPHVSTSPTPAPGRR 158
GE G P R P G + PGE+G AG +PG AG A G P P PG R
Sbjct: 483 GERGAPGFRG-----PAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVP-GGPGMR 536
Query: 159 GGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQK--EAFD 216
G + P P S ++ R P PS G RG G K +
Sbjct: 537 GMPGSPGGPGSDGKPGPPGSQGESGR--PGPPGPS----GPRGQPGVMGFPGPKGNDGAP 590
Query: 217 GQGGRSPLPLPPSTAGPPPLEG 238
G+ G P P GPP G
Sbjct: 591 GKNGERGGPGGPGPQGPPGKNG 612
Score = 37.4 bits (85), Expect = 0.012
Identities = 46/163 (28%), Positives = 58/163 (35%), Gaps = 24/163 (14%)
Query: 87 LAGIWRDPAPVMSHGEAGTPAPRAARLG-APRGASPPPGEEGRAGAWRSPGEAGAA---- 141
LAG +P + G G P + G RG + PG G G PG G A
Sbjct: 1003 LAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG 1062
Query: 142 DGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG---- 197
D P APG G R A P + + E ER + ++G
Sbjct: 1063 DRGESGPAGPAGAPGPAGSRGA-----------PGPQGPRGDKGETGERGAAGIKGHRGF 1111
Query: 198 -GQRGPAHSTGMETQKEAFDGQGGRSPL-PLPPSTAGPPPLEG 238
G G S G Q+ A G P P+ PS GPP +G
Sbjct: 1112 PGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPS--GPPGKDG 1152
Score = 36.2 bits (82), Expect = 0.026
Identities = 45/167 (26%), Positives = 57/167 (34%), Gaps = 29/167 (17%)
Query: 99 SHGEAGTPAP--RAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPG 156
S G+ G P P A G+P GA G G G+ +PG+ G H P P
Sbjct: 328 SDGQPGPPGPPGTAGFPGSP-GAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPP 386
Query: 157 RRGGREARLRPMPTPSWIPVSSHKKAARSEP----AERRPSLLQG--------------- 197
G M P+ IP + AR P A P L G
Sbjct: 387 GINGSPGGKGEM-GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGP 445
Query: 198 -GQRGPAHSTGM-----ETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+RG A G+ E K+ G+ G + LP G P G
Sbjct: 446 RGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRG 492
Score = 35.0 bits (79), Expect = 0.057
Identities = 41/142 (28%), Positives = 45/142 (31%), Gaps = 22/142 (15%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGG 160
G AG P P P G PPG G G+ SPG G S P P G
Sbjct: 168 GLAGYPGP-----AGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIG 222
Query: 161 REARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQK--EAFD 216
PS + P ER L G G +GPA G K FD
Sbjct: 223 ----------PSGPAGKDGESGRPGRPGERG---LPGPPGIKGPAGIPGFPGMKGHRGFD 269
Query: 217 GQGGRSPLPLPPSTAGPPPLEG 238
G+ G P G L G
Sbjct: 270 GRNGEKGETGAPGLKGENGLPG 291
Score = 34.7 bits (78), Expect = 0.075
Identities = 44/166 (26%), Positives = 58/166 (34%), Gaps = 31/166 (18%)
Query: 103 AGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGA--ADGSPHVSTSPTPAPG---- 156
A T P P+G PPG GR G PG+ G+ + G P + S P
Sbjct: 94 APTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSP 153
Query: 157 -------RRGGREARLRPMPTPSWIP-------VSSHKKAARS--------EPAERRPSL 194
+ G L P P+ P S H + S EP + PS
Sbjct: 154 QYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSG 213
Query: 195 LQG--GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G G GP+ G + + G+ G LP PP GP + G
Sbjct: 214 PPGPPGAIGPSGPAGKDGE-SGRPGRPGERGLPGPPGIKGPAGIPG 258
Score = 33.9 bits (76), Expect = 0.13
Identities = 50/172 (29%), Positives = 59/172 (34%), Gaps = 52/172 (30%)
Query: 101 GEAGTPAPRAAR-LGAPRGASPP------PGEEGRAGAWRSPGEAGA--------ADGSP 145
GE G P + L GA P PGE GR G PG AGA +DG P
Sbjct: 276 GETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGL---PGAAGARGNDGARGSDGQP 332
Query: 146 HVSTSPTPAPGRRG-----GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--- 197
P PG G G + + P +P S+ R EP + + QG
Sbjct: 333 ----GPPGPPGTAGFPGSPGAKGEVGPAGSPG----SNGAPGQRGEPGPQGHAGAQGPPG 384
Query: 198 -----------GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G+ GPA G A G R P P P G P L G
Sbjct: 385 PPGINGSPGGKGEMGPAGIPG------APGLMGARGP-PGPAGANGAPGLRG 429
Score = 32.0 bits (71), Expect = 0.48
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG-----------AAD 142
P P G G+P P PRG P G G+ G PG G ++
Sbjct: 1121 PGPAGQQGAIGSPGP-----AGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSE 1175
Query: 143 GSPHVSTSPTPAPGRRG 159
GSP P P PG G
Sbjct: 1176 GSPGHPGQPGP-PGPPG 1191
Score = 28.1 bits (61), Expect = 7.0
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADG 143
G G P PR R RG+ PG G+ G PG G G
Sbjct: 1158 GPIGPPGPRGNR--GERGSEGSPGHPGQPGPPGPPGAPGPCCG 1198
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 44.3 bits (103), Expect = 9e-05
Identities = 41/140 (29%), Positives = 50/140 (35%), Gaps = 28/140 (20%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGA-WRSPGEAGAADGSPHVSTSPTPA 154
P G PA AA P A PPP A A R+P A AA +P P+P
Sbjct: 109 PAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAP-----PSPG 163
Query: 155 PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQKEA 214
P + G R R P+ P P + PA P+ G +R P +
Sbjct: 164 PAQPGPRAQRAAPLAAPPPAPA--------APPAVAPPA---GPRRAPPPAVAAR----- 207
Query: 215 FDGQGGRSPLPLPPSTAGPP 234
PLP PP PP
Sbjct: 208 ------EPPLPPPPQPPAPP 221
Score = 39.3 bits (90), Expect = 0.003
Identities = 39/133 (29%), Positives = 48/133 (36%), Gaps = 7/133 (5%)
Query: 94 PAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEG----RAGAWRSPGEAGAADGSPHVST 149
PAPV + A APRAA A SP P + G RA +P A AA +
Sbjct: 137 PAPVAAAAPAR--APRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPA 194
Query: 150 SPTPAPGRR-GGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGM 208
P AP RE L P P P P + +P ++ GG P +
Sbjct: 195 GPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREV 254
Query: 209 ETQKEAFDGQGGR 221
G GGR
Sbjct: 255 VRYLGGSGGAGGR 267
Score = 28.9 bits (63), Expect = 4.1
Identities = 44/164 (26%), Positives = 54/164 (32%), Gaps = 51/164 (31%)
Query: 108 PRAARLG-APRGASPPPGEEGRAGAWR-------------SPGEAGAADGSPHVSTSPTP 153
PR R G AP AS P R G R E ++GS V S P
Sbjct: 298 PRGDRPGRAPPAASARPSRSKRGGEERVLEKEEEEDDDEDEDEEDDVSEGS-EVPESDRP 356
Query: 154 AP-------GRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHST 206
A G RG + A+ R W P H+ Q RGPA +
Sbjct: 357 AGAQHHQLNGERGPQSAKER---VKEWTPCGPHQG--------------QDEGRGPAPGS 399
Query: 207 GMET--QKEAFDGQGGR----------SPLPLPPSTAGPPPLEG 238
G A + +GG SP+PLPP P +G
Sbjct: 400 GTRQVFSMAAMNKEGGTASVATGPDSPSPVPLPPGKPALPGADG 443
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 43.9 bits (102), Expect = 1e-04
Identities = 46/152 (30%), Positives = 56/152 (36%), Gaps = 31/152 (20%)
Query: 96 PVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPA- 154
P G G+P P +G P G PPGE G AG PG+ G DG P + SP P
Sbjct: 1328 PPGDDGPKGSPGP----VGFP-GDPGPPGEPGPAGQDGPPGDKG-DDGEPGQTGSPGPTG 1381
Query: 155 -------PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTG 207
PG+RG P P+ +K A+ E P G+ GP G
Sbjct: 1382 EPGPSGPPGKRG--------PPGPAGPEGRQGEKGAKGEAGLEGPP----GKTGPIGPQG 1429
Query: 208 METQK-----EAFDGQGGRSPLPLPPSTAGPP 234
+ G G LP P GPP
Sbjct: 1430 APGKPGPDGLRGIPGPVGEQGLPGSPGPDGPP 1461
Score = 43.1 bits (100), Expect = 2e-04
Identities = 43/158 (27%), Positives = 55/158 (34%), Gaps = 33/158 (20%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPA-PGRRG 159
GE G P PR G P G +GR G PG G + P PGR+G
Sbjct: 829 GEIGPPGPR--------GEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQG 880
Query: 160 GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMETQKEA 214
+ + P P ++ +K R P + P +G G+RGP TG K
Sbjct: 881 PKGSIGFP-----GFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGN 935
Query: 215 FDGQGGRSP--------------LPLPPSTAGPPPLEG 238
G G P P P GPP +G
Sbjct: 936 SGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDG 973
Score = 42.7 bits (99), Expect = 3e-04
Identities = 45/152 (29%), Positives = 54/152 (35%), Gaps = 16/152 (10%)
Query: 94 PAPVMSHGEAGTPAPRAARLG-----APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVS 148
P P + GE G P + G PRG PPG G G PGE G +
Sbjct: 1191 PGPSGADGEPG-PRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMG 1249
Query: 149 TSPTPAPGRRGGREARLRPMPTPSWI--PVSSHKKAARSEPAERRPSLLQGGQRGPAHST 206
P P G P P I P + +K E E P L G+ GP
Sbjct: 1250 PPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGE--PGL--PGEGGPPGPK 1305
Query: 207 GMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G +K G+ G S PP GPP +G
Sbjct: 1306 GERGEK----GESGPSGAAGPPGPKGPPGDDG 1333
Score = 41.2 bits (95), Expect = 8e-04
Identities = 32/82 (39%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 87 LAGIWRDPAP---VMSHGEAGTPA----PRAARLGAPRGASPPPGEEGRAGAWRSPGEAG 139
+ G+ P P V GE G P P A L P+GA PPGE+G G PG G
Sbjct: 698 VTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPG 757
Query: 140 AADGSPHVSTSPTPAPGRRGGR 161
ADG P P PG +GG+
Sbjct: 758 -ADGPPGHPGKEGP-PGEKGGQ 777
Score = 39.7 bits (91), Expect = 0.002
Identities = 47/157 (29%), Positives = 57/157 (36%), Gaps = 18/157 (11%)
Query: 93 DPAPVMSHGEAGTPAPRAARLGAP--RGASPPPGEEGRAGAWRSPGEAGAADGSPHVS-- 148
+P S G G P P G P RG P G EGR G + GEAG +G P +
Sbjct: 1370 EPGQTGSPGPTGEPGPS----GPPGKRGPPGPAGPEGRQGEKGAKGEAG-LEGPPGKTGP 1424
Query: 149 TSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHST 206
P APG+ G LR +P P P P L G G GP
Sbjct: 1425 IGPQGAPGKPG--PDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEK 1482
Query: 207 GME-----TQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G G+ G LP P ++GP +G
Sbjct: 1483 GHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQG 1519
Score = 38.1 bits (87), Expect = 0.007
Identities = 50/174 (28%), Positives = 56/174 (32%), Gaps = 32/174 (18%)
Query: 89 GIWRDPAPVMSHGEAGTPA-PRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHV 147
G+ P PV G G P PRG PPG G+ G G GA G P
Sbjct: 565 GLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGAR-GMPG- 622
Query: 148 STSP---------TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG- 197
T P PG +G R P PS P R + E P L G
Sbjct: 623 QTGPKGDRGFDGLAGLPGEKGHRGD-----PGPSGPPGPPGDDGERGDDGEVGPRGLPGE 677
Query: 198 -------------GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G GP TGM+ Q G G P PP G P +G
Sbjct: 678 PGPRGLLGPKGPPGPPGPPGVTGMDGQPGP-KGNVGPQGEPGPPGQQGNPGAQG 730
Score = 37.7 bits (86), Expect = 0.009
Identities = 45/170 (26%), Positives = 56/170 (32%), Gaps = 33/170 (19%)
Query: 101 GEAGTPAPRAARLG--APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRR 158
G+ G P P +G P G + P GE G G PGE G + T P P
Sbjct: 988 GKTGPPGPPGV-VGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGL 1046
Query: 159 GGREA--RLRPMPTPSWIPVSSHKKAAR------------SEPAERRPSLLQG------- 197
G++ LR P +P + P ER P+ G
Sbjct: 1047 PGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGR 1106
Query: 198 ----GQRGPAHSTGMETQK-----EAFDGQGGRSPLPLPPSTAGPPPLEG 238
G GPA G +K DG G LP P GPP +G
Sbjct: 1107 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDG 1156
Score = 37.0 bits (84), Expect = 0.015
Identities = 44/158 (27%), Positives = 56/158 (35%), Gaps = 20/158 (12%)
Query: 96 PVMSHGEAGTPAPRAAR-LGAPRGASPPPGEEGRAGAWRSPGEAG-----AADGSPHVST 149
P GE G P+ P+G PPG++G G GE G G P V
Sbjct: 941 PAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGV-V 999
Query: 150 SPTPAPGRRGGREARLRP----MPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQR 200
P G G R P P +P + K+ + +P P+ L G G R
Sbjct: 1000 GPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPG---PAGLPGKDGPPGLR 1056
Query: 201 GPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
G G+ A +G P P PP AG P G
Sbjct: 1057 GFPGDRGLPGPVGALGLKGNEGP-PGPPGPAGSPGERG 1093
Score = 34.7 bits (78), Expect = 0.075
Identities = 42/148 (28%), Positives = 51/148 (34%), Gaps = 19/148 (12%)
Query: 104 GTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAG--------AADGSPHVSTSPTPAP 155
G P P P G PPG G G PGE G ADG P + P
Sbjct: 469 GPPGPEG-----PAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLP 523
Query: 156 GRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG-----GQRGPAHSTGMET 210
R GG P S + ++ A R P+ G G GP S G++
Sbjct: 524 FRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKG 583
Query: 211 QKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
+ QG R + PP AG P G
Sbjct: 584 EPGDVGPQGPRG-VQGPPGPAGKPGRRG 610
Score = 34.7 bits (78), Expect = 0.075
Identities = 44/160 (27%), Positives = 53/160 (33%), Gaps = 23/160 (14%)
Query: 94 PAPVMSHGEAGTPAPRAAR----------LGAPRGASPPPGEEGRAGAWRSPGEAGA--- 140
P P G G P+ L P G PPGE+G G PG+ G+
Sbjct: 1113 PGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGD 1172
Query: 141 -ADGSPHVSTSPTPAPGRRGGREARLRPMPT-PSWIPVSSHKKAARSEPAERRPSLLQGG 198
+ P T P G+ G A P P + + R P P LQ G
Sbjct: 1173 KGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQ-G 1231
Query: 199 QRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
GP G ET G G+ P PP GP G
Sbjct: 1232 LPGPPGEKG-ET------GDVGQMGPPGPPGPRGPSGAPG 1264
Score = 30.8 bits (68), Expect = 1.1
Identities = 45/161 (27%), Positives = 53/161 (32%), Gaps = 52/161 (32%)
Query: 101 GEAGTPAP-------------RAARLGAPRGASPPPGEEGRAGAWRSPGEAG-------- 139
G+AG+ P + ARL A RG + P G GR G PG G
Sbjct: 530 GDAGSKGPMVSAQESQAQAILQQARL-ALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDV 588
Query: 140 AADGSPHVSTSPTPA--PGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG 197
G V P PA PGRRG A S+ A P
Sbjct: 589 GPQGPRGVQGPPGPAGKPGRRG----------------------RAGSDGARGMP----- 621
Query: 198 GQRGPAHSTGMETQKEAFDGQGGRSPLPLPPSTAGPPPLEG 238
GQ GP G + G+ G P P GPP +G
Sbjct: 622 GQTGPKGDRGFD-GLAGLPGEKGHRGDPGPSGPPGPPGDDG 661
Score = 29.3 bits (64), Expect = 3.1
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 89 GIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVS 148
GI P+ G G P P + +G+S P G +G AG PG G G P
Sbjct: 1519 GITGPSGPIGPPGPPGLPGPPGPK--GAKGSSGPTGPKGEAG---HPGPPG-PPGPPGEV 1572
Query: 149 TSPTPAPGRRGGR 161
P P R R
Sbjct: 1573 IQPLPIQASRTRR 1585
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 43.9 bits (102), Expect = 1e-04
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 99 SHGEAGTPA-PRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGR 157
+ GE G P P L +G PPG++G+ GA PG G ++GSP PG
Sbjct: 600 TRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMG-SNGSP----GQPGTPGS 654
Query: 158 RGGR-EARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQG--GQRGPAHSTGMETQKEA 214
+G + E ++ MP S + + EP +QG G +G G++ QK
Sbjct: 655 KGSKGEPGIQGMPGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGEKGIQGQK-- 712
Query: 215 FDGQGGRSPLP 225
G+ GR +P
Sbjct: 713 --GENGRQGIP 721
Score = 37.0 bits (84), Expect = 0.015
Identities = 42/146 (28%), Positives = 59/146 (40%), Gaps = 14/146 (9%)
Query: 99 SHGEAGTPAPRAARLGAP--RGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPA-- 154
S G+ GTP + ++ G P +G G +G GA SPGE G G P +
Sbjct: 645 SPGQPGTPGSKGSK-GEPGIQGMPGASGLKGEPGATGSPGEPGYM-GLPGIQGKKGDKGN 702
Query: 155 PGRRG--GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQK 212
G +G G++ P + H A+ E E+ + G RG S G E+
Sbjct: 703 QGEKGIQGQKGENGRQGIPGQQGIQGHH-GAKGERGEKG----EPGVRGAIGSKG-ESGV 756
Query: 213 EAFDGQGGRSPLPLPPSTAGPPPLEG 238
+ G G P P GPP L+G
Sbjct: 757 DGLMGPAGPKGQPGDPGPQGPPGLDG 782
Score = 32.0 bits (71), Expect = 0.48
Identities = 43/143 (30%), Positives = 51/143 (35%), Gaps = 26/143 (18%)
Query: 101 GEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSP---GEAGAADGSPHVSTSPTPA--- 154
G AG P G P G + PG G+ G SP GEAG+ T P
Sbjct: 557 GNAGFP-------GLP-GPAGEPGRHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPG 608
Query: 155 -PGRRG--GREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHSTGMETQ 211
PG RG G++ + P P KK A P S GQ G S G + +
Sbjct: 609 FPGNRGLMGQKGEIGP-------PGQQGKKGAPGMPG-LMGSNGSPGQPGTPGSKGSKGE 660
Query: 212 KEAFDGQGGRSPLPLPPSTAGPP 234
G G S L P G P
Sbjct: 661 -PGIQGMPGASGLKGEPGATGSP 682
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 43.9 bits (102), Expect = 1e-04
Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 11/140 (7%)
Query: 92 RDPAPVMSHG----EAGTPAPRAARLG-APRGASPPPGEEGRAGAWRSPGEAGAADGSPH 146
+DP P S G P P L P ++ P G + R P AG + SPH
Sbjct: 1024 QDPLPAHSGALPFPSPGPPQPPHPPLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPSPH 1083
Query: 147 VSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQRGPAHST 206
+ SP P+PG + P P + P + AA ++ P GG + P
Sbjct: 1084 LVPSPAPSPG-----PGPVPPRPPAAEPPPCLRRGAAAADLLSSSPESQHGGTQSPGGGQ 1138
Query: 207 GMETQKEAFDGQGGRSPLPL 226
+ Q D GR P L
Sbjct: 1139 PL-LQPTKVDAAEGRRPQAL 1157
>gi|6754638 microtubule-associated protein tau isoform 2 [Homo
sapiens]
Length = 441
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 23/156 (14%)
Query: 57 GELAVQLRLAELPERAAVHTRSLG---------AGRVVRLAGIWRDPAPVMSHGEAGTPA 107
G+ A E+PE +G AG V + + + S + A
Sbjct: 86 GKQAAAQPHTEIPEGTTAEEAGIGDTPSLEDEAAGHVTQARMVSKSKDGTGSDDKKAKGA 145
Query: 108 PRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRG-------- 159
++ PRGA+PP G++G+A A R P + A +P S P + R G
Sbjct: 146 DGKTKIATPRGAAPP-GQKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPG 204
Query: 160 --GREARLRPMPTPSWIPVSSHKKAARSEPAERRPS 193
G +R +PTP P KK A + PS
Sbjct: 205 TPGSRSRTPSLPTP---PTREPKKVAVVRTPPKSPS 237
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,584,617
Number of Sequences: 37866
Number of extensions: 848645
Number of successful extensions: 9524
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 952
Number of HSP's that attempted gapping in prelim test: 5101
Number of HSP's gapped (non-prelim): 3251
length of query: 238
length of database: 18,247,518
effective HSP length: 99
effective length of query: 139
effective length of database: 14,498,784
effective search space: 2015330976
effective search space used: 2015330976
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.