Guide to the Human Genome
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Name: LOC100286890 Sequence: fasta or formatted (238aa) NCBI GI: 239745169
Description:

PREDICTED: hypothetical protein XP_002343388

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         29           2
 C cysteine            0.0          0           0
 D aspartate           3.4          8           3
 E glutamate           6.7         16           2
 F phenylalanine       0.8          2           1
 G glycine            12.2         29           3
 H histidine           2.9          7           1
 I isoleucine          1.3          3           1
 K lysine              2.1          5           2
 L leucine             8.4         20           2
 M methionine          2.9          7           2
 N asparagine          1.3          3           1
 P proline            12.2         29           3
 Q glutamine           4.2         10           1
 R arginine           10.5         25           2
 S serine              6.7         16           2
 T threonine           5.9         14           1
 V valine              4.6         11           2
 W tryptophan          1.3          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343388 
LOC100291781          1.000   PREDICTED: hypothetical protein XP_002344871 
LOC100290673          1.000   PREDICTED: hypothetical protein XP_002347567 
COL5A2                0.056   alpha 2 type V collagen preproprotein 
COL6A1                0.056   collagen, type VI, alpha 1 precursor 
OGFR                  0.054   opioid growth factor receptor 
COL9A2                0.054   alpha 2 type IX collagen 
COL2A1                0.054   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.054   collagen, type II, alpha 1 isoform 2 precursor [Hom...
EMID1                 0.054   EMI domain containing 1 
COL1A1                0.052   alpha 1 type I collagen preproprotein 
COL11A1               0.048   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.048   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.048   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL4A4                0.048   alpha 4 type IV collagen precursor 
LMTK3                 0.048   lemur tyrosine kinase 3 
COL1A2                0.046   alpha 2 type I collagen 
WIPF1                 0.043   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.043   WAS/WASL interacting protein family, member 1 
COL11A2               0.043   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.043   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.043   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL5A3                0.043   collagen, type V, alpha 3 preproprotein 
COL16A1               0.043   alpha 1 type XVI collagen precursor 
COL3A1                0.043   collagen type III alpha 1 preproprotein 
SAMD1                 0.041   sterile alpha motif domain containing 1 
COL5A1                0.041   alpha 1 type V collagen preproprotein 
COL21A1               0.041   collagen, type XXI, alpha 1 precursor 
PTPN23                0.041   protein tyrosine phosphatase, non-receptor type 23 [...
MAPT                  0.041   microtubule-associated protein tau isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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