Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239755717
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755717 PREDICTED: hypothetical protein [Homo sapiens]
(187 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755717 PREDICTED: hypothetical protein [Homo sapiens] 386 e-108
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens] 332 1e-91
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ... 332 1e-91
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 42 4e-04
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 41 5e-04
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 41 5e-04
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 40 9e-04
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 40 9e-04
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 40 9e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 40 0.001
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 40 0.001
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 40 0.001
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 40 0.001
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 39 0.002
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 39 0.002
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 39 0.002
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 39 0.003
gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens] 39 0.003
gi|98986321 gliomedin [Homo sapiens] 39 0.003
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 38 0.004
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 38 0.004
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 38 0.004
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 38 0.004
gi|13994280 C1q and tumor necrosis factor related protein 7 isof... 37 0.008
gi|206597454 C1q and tumor necrosis factor related protein 7 iso... 37 0.008
gi|206597452 C1q and tumor necrosis factor related protein 7 iso... 37 0.008
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 37 0.008
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 37 0.013
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 37 0.013
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 37 0.013
>gi|239755717 PREDICTED: hypothetical protein [Homo sapiens]
Length = 187
Score = 386 bits (991), Expect = e-108
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR
Sbjct: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
Query: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL
Sbjct: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
Query: 121 LTPFLLLXLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSSFPALP 180
LTPFLLL LPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSSFPALP
Sbjct: 121 LTPFLLLXLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSSFPALP 180
Query: 181 LLPHTLK 187
LLPHTLK
Sbjct: 181 LLPHTLK 187
>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 332 bits (851), Expect = 1e-91
Identities = 179/257 (69%), Positives = 180/257 (70%), Gaps = 70/257 (27%)
Query: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR
Sbjct: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
Query: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL
Sbjct: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
Query: 121 LTPFLLLXL------------------------------------------------PPP 132
LTPFLLL L P
Sbjct: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180
Query: 133 PPPPSFSSSSS----------------------SSFPFLLLLPLFFLLLLSSFSSSTFSS 170
PS+SS SS SSFPFLLLLPLFFLLLLSSFSSSTFSS
Sbjct: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240
Query: 171 SSSSSFPALPLLPHTLK 187
SSSSSFPALPLLPHTLK
Sbjct: 241 SSSSSFPALPLLPHTLK 257
>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
Length = 257
Score = 332 bits (851), Expect = 1e-91
Identities = 179/257 (69%), Positives = 180/257 (70%), Gaps = 70/257 (27%)
Query: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR
Sbjct: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
Query: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL
Sbjct: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
Query: 121 LTPFLLLXL------------------------------------------------PPP 132
LTPFLLL L P
Sbjct: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180
Query: 133 PPPPSFSSSSS----------------------SSFPFLLLLPLFFLLLLSSFSSSTFSS 170
PS+SS SS SSFPFLLLLPLFFLLLLSSFSSSTFSS
Sbjct: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240
Query: 171 SSSSSFPALPLLPHTLK 187
SSSSSFPALPLLPHTLK
Sbjct: 241 SSSSSFPALPLLPHTLK 257
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 41.6 bits (96), Expect = 4e-04
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 17 TLGPGTGPGTEWA----------GNEGLLGTVGEKGTEALRGKR--KGEVEGQTGREGKV 64
+LGP PG A G++G++G +G G + +G++ G+ EG G G
Sbjct: 1289 SLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDR 1348
Query: 65 -----RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
RG++ GDP P Q G + ++ K G PG
Sbjct: 1349 GPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPG 1385
Score = 35.8 bits (81), Expect = 0.022
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 19 GPGTGPGTEW-AGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGK--VRGEQSLHGDP 74
GP PG + AG +G G G+ G GKR V G G +G +GE L G
Sbjct: 1442 GPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQL 1501
Query: 75 RRPHQRGTEAVKWKDGGLRDPG 96
P +RGTE G +PG
Sbjct: 1502 GPPGKRGTEGRTGLPGNQGEPG 1523
Score = 33.5 bits (75), Expect = 0.11
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 19 GPGTGPG-TEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRP 77
GP PG T G EG G GEKG +G + G +G++ GE + GDP P
Sbjct: 1228 GPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAK--------GYQGQL-GEMGVPGDPGPP 1278
Query: 78 HQRGTEAVKWKDGGLRDPGQWTSEPE 103
G + + G PG+ ++ E
Sbjct: 1279 GTPGPKGSRGSLGPTGAPGRMGAQGE 1304
Score = 33.1 bits (74), Expect = 0.14
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 18 LGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRP 77
LGP PG + G +GL+G+VGE G + +G++ V G +G G +G++ G P P
Sbjct: 828 LGPIGYPGPK--GMKGLMGSVGEPGLKGDKGEQ--GVPGVSGDPG-FQGDKGSQGLPGFP 882
Query: 78 HQRG 81
RG
Sbjct: 883 GARG 886
Score = 32.3 bits (72), Expect = 0.24
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 18 LGPGTGPGTEWAGNEGLLGTVGEKGTEALRGK-----RKGEVE--------GQTGREGKV 64
+GP PG E G G G G G + ++G+ R G V G G G V
Sbjct: 951 MGPPGAPGLE--GQPGRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIV 1008
Query: 65 --RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQ 97
+G++ + G P P +G+ GG+ PG+
Sbjct: 1009 GEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGE 1043
Score = 32.3 bits (72), Expect = 0.24
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK--RKGE--VEGQTGREGK--VRGEQSLHGD 73
PG G G G G G +G +RG R+G +G G +G ++G G
Sbjct: 1032 PGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGR 1091
Query: 74 PRRPHQRGTEAVKWKDGGLRDPG 96
P RP Q+G + G PG
Sbjct: 1092 PGRPGQQGVAGERGHLGSRGFPG 1114
Score = 32.3 bits (72), Expect = 0.24
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 18 LGPGTGPGTEWA----GNEGLLGTVGEKGTEALRGKR-----KGEVEGQTGREGKVRGEQ 68
LGP PG + G GL G G G + L+G R GE G+ G+EG + GE
Sbjct: 1170 LGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGE-HGEKGQEG-LMGED 1227
Query: 69 SLHGDPRRPHQRGTEAVKWKDG 90
G P RG E K G
Sbjct: 1228 GPPGPPGVTGVRGPEGKSGKQG 1249
Score = 31.6 bits (70), Expect = 0.42
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGK--VRGEQSLHGDPRRP 77
PG G+ G LGT GE+G RG + +EG +G G ++G++ G
Sbjct: 1158 PGLPGEAGMKGDLGPLGTPGEQGLIGQRG--EPGLEGDSGPMGPDGLKGDRGDPGPDGEH 1215
Query: 78 HQRGTEAVKWKDGGLRDPG 96
++G E + +DG PG
Sbjct: 1216 GEKGQEGLMGEDGPPGPPG 1234
Score = 31.2 bits (69), Expect = 0.54
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 19 GPGTGPGTE-WAGNEGLLGTVGEKGTEALRG-----------KRKGEVEGQTGREGKVRG 66
GP PG + + G +GL G VG+ G + RG GE G G GK RG
Sbjct: 727 GPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGE-RGLPGVPGK-RG 784
Query: 67 EQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
+ + G P +RG + G L PG
Sbjct: 785 KMGMPGFPGVFGERGPPGLDGNPGELGLPG 814
Score = 30.4 bits (67), Expect = 0.93
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK--RKGEVEGQTGREGK--VRGEQSLHGD-- 73
PG W G +G G G KG + G R+G V+G G G V G Q L G
Sbjct: 1384 PGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRG-VQGLQGLPGPRGVVGRQGLEGIAG 1442
Query: 74 ----PRRPHQRGTEAVKWKDGGLRDPG 96
P R Q G + + DG DPG
Sbjct: 1443 PDGLPGRDGQAGQQGEQGDDG---DPG 1466
Score = 30.0 bits (66), Expect = 1.2
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 30 GNEGLLGTVGEKGTEALRG-KRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKWK 88
G+ G G G KG++ G K K G GR G V+G Q L G ++G E +
Sbjct: 1385 GHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRG-VQGLQGLPGPRGVVGRQGLEGIAGP 1443
Query: 89 DGGLRDPGQWTSEPEQ 104
DG GQ + EQ
Sbjct: 1444 DGLPGRDGQAGQQGEQ 1459
Score = 29.3 bits (64), Expect = 2.1
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPH 78
GP PG GN GL G G KG + G G + G +G + G L G+P P
Sbjct: 652 GPRGPPGPY--GNPGLPGPPGAKGQKGDPGLSPG--KAHDGAKGDM-GLPGLSGNPGPPG 706
Query: 79 QRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
++G + PG EQ +P P
Sbjct: 707 RKGHKGY---------PGPAGHPGEQGQPGP 728
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 41.2 bits (95), Expect = 5e-04
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 19 GPGTGPGTEWA----GNEGLLGTVGEKGTEALRGKR--KGEV--EGQTGREGKVRGEQSL 70
GP PG + G G G GE+G + L GK +GE+ +G GR G+ +GE L
Sbjct: 747 GPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGE-KGEAGL 805
Query: 71 HGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
G P P RG + + + G L PG E+ E P
Sbjct: 806 PGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGP 844
Score = 30.8 bits (68), Expect = 0.71
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 30 GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKWKD 89
G +G +G +G G +G+ KG+V +G+ +GE+ G P P + G++ ++ +
Sbjct: 496 GPKGDIGAIGPVGAPGPKGE-KGDVGIGPFGQGE-KGEKGSLGLPGPPGRDGSKGMRGEP 553
Query: 90 GGLRDPG 96
G L +PG
Sbjct: 554 GELGEPG 560
Score = 30.0 bits (66), Expect = 1.2
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 19 GPGTGPGTEWA----------GNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVR-G 66
GP PG+ A G G G GE+G+ G R G G GK + G
Sbjct: 928 GPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDG 987
Query: 67 EQSLHGDPRRPHQRGTEAVKWKDGG 91
E L G P P GT+A K G
Sbjct: 988 EPGLRGSPGLPGPLGTKAACGKVRG 1012
Score = 29.6 bits (65), Expect = 1.6
Identities = 26/65 (40%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 19 GPGTGPGTEW-AGNEGLLGTVGEKGTEALRGKR-------KGEVEGQTGREGK--VRGEQ 68
GP PG G GL G GEKGT +G+R K GQ GR G V G Q
Sbjct: 572 GPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQ 631
Query: 69 SLHGD 73
GD
Sbjct: 632 GEKGD 636
Score = 28.5 bits (62), Expect = 3.5
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK--RKGEVEGQTGREGKVRGEQSLHGDPRRP 77
PG G G G+VG G GK +GE +G G EG G GDP P
Sbjct: 918 PGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGE-KGAAGEEGS-PGPVGPRGDPGAP 975
Query: 78 HQRGTEAVKWKDG--GLR-DPG 96
G K KDG GLR PG
Sbjct: 976 GLPGPPG-KGKDGEPGLRGSPG 996
Score = 27.3 bits (59), Expect = 7.9
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 27/114 (23%)
Query: 19 GPGTGPGTE-WAGNEGLLGTVGEKGTEALRGKR--------------KGEVEGQTGREGK 63
GP PG + G++G+ G G +GTE +G+ +G +G+ G +G+
Sbjct: 1120 GPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGS-QGERGADGE 1178
Query: 64 V--RGEQ------SLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
V +G+Q G P P G + + G PG S ++ P P
Sbjct: 1179 VGQKGDQGHPGVPGFMGPPGNPGPPGADGIA---GAAGPPGIQGSPGKEGPPGP 1229
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 41.2 bits (95), Expect = 5e-04
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 78 HQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP----CLSGCLLLLLLLTPFLLLXLPPPP 133
HQRG +KD G PG W PE + P P CL L +L + P + P
Sbjct: 583 HQRG-----FKDPGATRPGVWRWLPEGSAPKPSPLHCLESALRGILPVRPLRFACVGGPS 637
Query: 134 PPPSFSSSSSSS 145
P PS SSSS S
Sbjct: 638 PSPSPGSSSSFS 649
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 40.4 bits (93), Expect = 9e-04
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE----VEGQTGREGKVRGEQSLHGDP 74
GP PG G G GEKG RG G ++G+ GR+G+ +GE + G P
Sbjct: 505 GPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGE-KGEPADPGPP 563
Query: 75 RRPHQRGTEAVKWKDGGLRDPG 96
P RG V +G PG
Sbjct: 564 GEPGPRGPRGVPGPEGEPGPPG 585
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRR-- 76
GP PG + G +G G G KG L GK +GQ G+ G++ G GDP
Sbjct: 298 GPKGVPG--FKGEKGEFGADGRKGAPGLAGKNG--TDGQKGKLGRI-GPPGCKGDPGNRG 352
Query: 77 ----PHQRGTEAVKWKDGGLRDPGQ 97
P + G+ + GG DPG+
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGR 377
Score = 36.6 bits (83), Expect = 0.013
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVRGEQSLHGDPRRPH 78
PG G +G LG +G G + G R + G+ G G+ RG+Q GDP RP
Sbjct: 321 PGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE-RGDQGGKGDPGRPG 379
Query: 79 QRG 81
+RG
Sbjct: 380 RRG 382
Score = 30.0 bits (66), Expect = 1.2
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 30 GNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREG-KVRGEQSLHGDPRRPHQRGTEAVKW 87
G G G+ G+ G RG + +G GR G G + G+ P RG E +
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540
Query: 88 KDGGLRDPGQWTSEPEQTEPSP 109
G +PG+ + E +P P
Sbjct: 541 DFGLKGEPGRKGEKGEPADPGP 562
Score = 29.3 bits (64), Expect = 2.1
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--------------KGEVEGQTGREGKVR 65
PG + G +G G +GE G +G++ KG V G G +G+
Sbjct: 255 PGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKG-VPGFKGEKGEF- 312
Query: 66 GEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G G P + GT+ K K G + PG
Sbjct: 313 GADGRKGAPGLAGKNGTDGQKGKLGRIGPPG 343
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 40.4 bits (93), Expect = 9e-04
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE----VEGQTGREGKVRGEQSLHGDP 74
GP PG G G GEKG RG G ++G+ GR+G+ +GE + G P
Sbjct: 505 GPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGE-KGEPADPGPP 563
Query: 75 RRPHQRGTEAVKWKDGGLRDPG 96
P RG V +G PG
Sbjct: 564 GEPGPRGPRGVPGPEGEPGPPG 585
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRR-- 76
GP PG + G +G G G KG L GK +GQ G+ G++ G GDP
Sbjct: 298 GPKGVPG--FKGEKGEFGADGRKGAPGLAGKNG--TDGQKGKLGRI-GPPGCKGDPGNRG 352
Query: 77 ----PHQRGTEAVKWKDGGLRDPGQ 97
P + G+ + GG DPG+
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGR 377
Score = 36.6 bits (83), Expect = 0.013
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVRGEQSLHGDPRRPH 78
PG G +G LG +G G + G R + G+ G G+ RG+Q GDP RP
Sbjct: 321 PGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE-RGDQGGKGDPGRPG 379
Query: 79 QRG 81
+RG
Sbjct: 380 RRG 382
Score = 30.0 bits (66), Expect = 1.2
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 30 GNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREG-KVRGEQSLHGDPRRPHQRGTEAVKW 87
G G G+ G+ G RG + +G GR G G + G+ P RG E +
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540
Query: 88 KDGGLRDPGQWTSEPEQTEPSP 109
G +PG+ + E +P P
Sbjct: 541 DFGLKGEPGRKGEKGEPADPGP 562
Score = 29.3 bits (64), Expect = 2.1
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--------------KGEVEGQTGREGKVR 65
PG + G +G G +GE G +G++ KG V G G +G+
Sbjct: 255 PGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKG-VPGFKGEKGEF- 312
Query: 66 GEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G G P + GT+ K K G + PG
Sbjct: 313 GADGRKGAPGLAGKNGTDGQKGKLGRIGPPG 343
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 40.4 bits (93), Expect = 9e-04
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE----VEGQTGREGKVRGEQSLHGDP 74
GP PG G G GEKG RG G ++G+ GR+G+ +GE + G P
Sbjct: 505 GPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGE-KGEPADPGPP 563
Query: 75 RRPHQRGTEAVKWKDGGLRDPG 96
P RG V +G PG
Sbjct: 564 GEPGPRGPRGVPGPEGEPGPPG 585
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRR-- 76
GP PG + G +G G G KG L GK +GQ G+ G++ G GDP
Sbjct: 298 GPKGVPG--FKGEKGEFGADGRKGAPGLAGKNG--TDGQKGKLGRI-GPPGCKGDPGNRG 352
Query: 77 ----PHQRGTEAVKWKDGGLRDPGQ 97
P + G+ + GG DPG+
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGR 377
Score = 36.6 bits (83), Expect = 0.013
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVRGEQSLHGDPRRPH 78
PG G +G LG +G G + G R + G+ G G+ RG+Q GDP RP
Sbjct: 321 PGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE-RGDQGGKGDPGRPG 379
Query: 79 QRG 81
+RG
Sbjct: 380 RRG 382
Score = 30.0 bits (66), Expect = 1.2
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 30 GNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREG-KVRGEQSLHGDPRRPHQRGTEAVKW 87
G G G+ G+ G RG + +G GR G G + G+ P RG E +
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540
Query: 88 KDGGLRDPGQWTSEPEQTEPSP 109
G +PG+ + E +P P
Sbjct: 541 DFGLKGEPGRKGEKGEPADPGP 562
Score = 29.3 bits (64), Expect = 2.1
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--------------KGEVEGQTGREGKVR 65
PG + G +G G +GE G +G++ KG V G G +G+
Sbjct: 255 PGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKG-VPGFKGEKGEF- 312
Query: 66 GEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G G P + GT+ K K G + PG
Sbjct: 313 GADGRKGAPGLAGKNGTDGQKGKLGRIGPPG 343
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK-----RKGE----VEGQTGREG--KVRGEQ 68
PG + G +G LG G+ G L GK KGE + G G G RG
Sbjct: 705 PGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNS 764
Query: 69 SLHGD---PRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSG 113
HG+ P P GT + DG DPGQ EQ P C+ G
Sbjct: 765 GEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEG 812
Score = 33.1 bits (74), Expect = 0.14
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 28 WAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKW 87
+ GN G+LG GE G V G G G + G G+P P QRG+ +
Sbjct: 875 YPGNPGILGPPGEDG-----------VIGMMGFPGAI-GPPGPPGNPGTPGQRGSPGIPG 922
Query: 88 KDGGLRDPGQWTSEPEQTEPSP 109
G PG + ++ P P
Sbjct: 923 VKGQRGTPGAKGEQGDKGNPGP 944
Score = 31.6 bits (70), Expect = 0.42
Identities = 37/103 (35%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 6 AKNCHHAKGFWTLGPGTGPGTE-WAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKV 64
AK KGF GP PG + + G EGL G G KG L G TG +G V
Sbjct: 44 AKGEKGEKGF--PGPPGSPGQKGFTGPEGLPGPQGPKGFPGL--------PGLTGSKG-V 92
Query: 65 RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEP 107
RG L G P GT G + PG S+ EQ P
Sbjct: 93 RGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFP 135
Score = 31.2 bits (69), Expect = 0.54
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 19 GPGTGPGTEWA-GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKV--------RGEQS 69
GP PGT G+ G+ G G++GT +G+ +G G G +GE
Sbjct: 904 GPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGE-----QGDKGNPGPSEISHVIGDKGEPG 958
Query: 70 LHGDPRRPHQRGTEAVKWKDG 90
L G P ++G V G
Sbjct: 959 LKGFAGNPGEKGNRGVPGMPG 979
Score = 30.4 bits (67), Expect = 0.93
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--KGEVEGQTGREGKVRGEQSLHGDPRR 76
GP PG G GL GT G G G+ +GE+ T V G G P
Sbjct: 611 GPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVST----PVPGPPGPPGPPGH 666
Query: 77 PHQRGTEAVKWKDGGLRDPG 96
P +G + G DPG
Sbjct: 667 PGPQGPPGIPGSLGKCGDPG 686
Score = 29.3 bits (64), Expect = 2.1
Identities = 34/110 (30%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR-----------KGEVEGQTGREGKV--- 64
GP PGT AG+ G G +G GT L G R KGE +G G G +
Sbjct: 1277 GPKGPPGT--AGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGE-KGNPGFLGSIGPP 1333
Query: 65 -----RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
+G + GDP GT + G PG Q EP P
Sbjct: 1334 GPIGPKGPPGVRGDP------GTLKIISLPGSPGPPGTPGEPGMQGEPGP 1377
Score = 28.9 bits (63), Expect = 2.7
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQ 79
PG+ PG+ G G G G KG++ RG+ + G G G G L G P P
Sbjct: 380 PGS-PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPG-CAGSPGLPGSPGPPGP 437
Query: 80 RG 81
G
Sbjct: 438 PG 439
Score = 28.1 bits (61), Expect = 4.6
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGK-------------V 64
GPGT GN G G +G G L G E ++G G G+ +
Sbjct: 751 GPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCI 810
Query: 65 RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G + G P +G + + K G DPG
Sbjct: 811 EGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPG 842
Score = 28.1 bits (61), Expect = 4.6
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQ 79
PG + G +GLLG G +G L G G G G +RG+Q G P +
Sbjct: 1115 PGPHGDLGFKGIKGLLGPPGIRGPPGLPG-----FPGSPGPMG-IRGDQGRDGIPGPAGE 1168
Query: 80 RG-TEAVKWKDGGLRDPGQWTSEPEQTEPS-PCLSG 113
+G T ++ G +PG ++ ++ P P L G
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPG 1204
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK-----RKGE----VEGQTGREG--KVRGEQ 68
PG + G +G LG G+ G L GK KGE + G G G RG
Sbjct: 705 PGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNS 764
Query: 69 SLHGD---PRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSG 113
HG+ P P GT + DG DPGQ EQ P C+ G
Sbjct: 765 GEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEG 812
Score = 33.1 bits (74), Expect = 0.14
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 28 WAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKW 87
+ GN G+LG GE G V G G G + G G+P P QRG+ +
Sbjct: 875 YPGNPGILGPPGEDG-----------VIGMMGFPGAI-GPPGPPGNPGTPGQRGSPGIPG 922
Query: 88 KDGGLRDPGQWTSEPEQTEPSP 109
G PG + ++ P P
Sbjct: 923 VKGQRGTPGAKGEQGDKGNPGP 944
Score = 31.6 bits (70), Expect = 0.42
Identities = 37/103 (35%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 6 AKNCHHAKGFWTLGPGTGPGTE-WAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKV 64
AK KGF GP PG + + G EGL G G KG L G TG +G V
Sbjct: 44 AKGEKGEKGF--PGPPGSPGQKGFTGPEGLPGPQGPKGFPGL--------PGLTGSKG-V 92
Query: 65 RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEP 107
RG L G P GT G + PG S+ EQ P
Sbjct: 93 RGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFP 135
Score = 31.2 bits (69), Expect = 0.54
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 19 GPGTGPGTEWA-GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKV--------RGEQS 69
GP PGT G+ G+ G G++GT +G+ +G G G +GE
Sbjct: 904 GPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGE-----QGDKGNPGPSEISHVIGDKGEPG 958
Query: 70 LHGDPRRPHQRGTEAVKWKDG 90
L G P ++G V G
Sbjct: 959 LKGFAGNPGEKGNRGVPGMPG 979
Score = 30.4 bits (67), Expect = 0.93
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--KGEVEGQTGREGKVRGEQSLHGDPRR 76
GP PG G GL GT G G G+ +GE+ T V G G P
Sbjct: 611 GPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVST----PVPGPPGPPGPPGH 666
Query: 77 PHQRGTEAVKWKDGGLRDPG 96
P +G + G DPG
Sbjct: 667 PGPQGPPGIPGSLGKCGDPG 686
Score = 30.4 bits (67), Expect = 0.93
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREGKVRGEQSLHGDPRRPH 78
PGT G G G G G RGK K G G G+ +G + G+P
Sbjct: 1363 PGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPGPAGE-KGNKGSKGEPGPAG 1421
Query: 79 QRGTEAVKWKDGGLRDPGQWTS 100
G +K K G P WT+
Sbjct: 1422 SDGLPGLKGKRGDSGSPATWTT 1443
Score = 29.3 bits (64), Expect = 2.1
Identities = 34/110 (30%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR-----------KGEVEGQTGREGKV--- 64
GP PGT AG+ G G +G GT L G R KGE +G G G +
Sbjct: 1277 GPKGPPGT--AGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGE-KGNPGFLGSIGPP 1333
Query: 65 -----RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
+G + GDP GT + G PG Q EP P
Sbjct: 1334 GPIGPKGPPGVRGDP------GTLKIISLPGSPGPPGTPGEPGMQGEPGP 1377
Score = 28.9 bits (63), Expect = 2.7
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQ 79
PG+ PG+ G G G G KG++ RG+ + G G G G L G P P
Sbjct: 380 PGS-PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPG-CAGSPGLPGSPGPPGP 437
Query: 80 RG 81
G
Sbjct: 438 PG 439
Score = 28.1 bits (61), Expect = 4.6
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGK-------------V 64
GPGT GN G G +G G L G E ++G G G+ +
Sbjct: 751 GPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCI 810
Query: 65 RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G + G P +G + + K G DPG
Sbjct: 811 EGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPG 842
Score = 28.1 bits (61), Expect = 4.6
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQ 79
PG + G +GLLG G +G L G G G G +RG+Q G P +
Sbjct: 1115 PGPHGDLGFKGIKGLLGPPGIRGPPGLPG-----FPGSPGPMG-IRGDQGRDGIPGPAGE 1168
Query: 80 RG-TEAVKWKDGGLRDPGQWTSEPEQTEPS-PCLSG 113
+G T ++ G +PG ++ ++ P P L G
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPG 1204
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK-----RKGE----VEGQTGREG--KVRGEQ 68
PG + G +G LG G+ G L GK KGE + G G G RG
Sbjct: 705 PGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNS 764
Query: 69 SLHGD---PRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSG 113
HG+ P P GT + DG DPGQ EQ P C+ G
Sbjct: 765 GEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEG 812
Score = 33.1 bits (74), Expect = 0.14
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 28 WAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKW 87
+ GN G+LG GE G V G G G + G G+P P QRG+ +
Sbjct: 875 YPGNPGILGPPGEDG-----------VIGMMGFPGAI-GPPGPPGNPGTPGQRGSPGIPG 922
Query: 88 KDGGLRDPGQWTSEPEQTEPSP 109
G PG + ++ P P
Sbjct: 923 VKGQRGTPGAKGEQGDKGNPGP 944
Score = 31.6 bits (70), Expect = 0.42
Identities = 37/103 (35%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 6 AKNCHHAKGFWTLGPGTGPGTE-WAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKV 64
AK KGF GP PG + + G EGL G G KG L G TG +G V
Sbjct: 44 AKGEKGEKGF--PGPPGSPGQKGFTGPEGLPGPQGPKGFPGL--------PGLTGSKG-V 92
Query: 65 RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEP 107
RG L G P GT G + PG S+ EQ P
Sbjct: 93 RGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFP 135
Score = 31.2 bits (69), Expect = 0.54
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 19 GPGTGPGTEWA-GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKV--------RGEQS 69
GP PGT G+ G+ G G++GT +G+ +G G G +GE
Sbjct: 904 GPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGE-----QGDKGNPGPSEISHVIGDKGEPG 958
Query: 70 LHGDPRRPHQRGTEAVKWKDG 90
L G P ++G V G
Sbjct: 959 LKGFAGNPGEKGNRGVPGMPG 979
Score = 30.4 bits (67), Expect = 0.93
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--KGEVEGQTGREGKVRGEQSLHGDPRR 76
GP PG G GL GT G G G+ +GE+ T V G G P
Sbjct: 611 GPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVST----PVPGPPGPPGPPGH 666
Query: 77 PHQRGTEAVKWKDGGLRDPG 96
P +G + G DPG
Sbjct: 667 PGPQGPPGIPGSLGKCGDPG 686
Score = 30.4 bits (67), Expect = 0.93
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREGKVRGEQSLHGDPRRPH 78
PGT G G G G G RGK K G G G+ +G + G+P
Sbjct: 1363 PGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPGPAGE-KGNKGSKGEPGPAG 1421
Query: 79 QRGTEAVKWKDGGLRDPGQWTS 100
G +K K G P WT+
Sbjct: 1422 SDGLPGLKGKRGDSGSPATWTT 1443
Score = 29.3 bits (64), Expect = 2.1
Identities = 34/110 (30%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR-----------KGEVEGQTGREGKV--- 64
GP PGT AG+ G G +G GT L G R KGE +G G G +
Sbjct: 1277 GPKGPPGT--AGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGE-KGNPGFLGSIGPP 1333
Query: 65 -----RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
+G + GDP GT + G PG Q EP P
Sbjct: 1334 GPIGPKGPPGVRGDP------GTLKIISLPGSPGPPGTPGEPGMQGEPGP 1377
Score = 28.9 bits (63), Expect = 2.7
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQ 79
PG+ PG+ G G G G KG++ RG+ + G G G G L G P P
Sbjct: 380 PGS-PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPG-CAGSPGLPGSPGPPGP 437
Query: 80 RG 81
G
Sbjct: 438 PG 439
Score = 28.1 bits (61), Expect = 4.6
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGK-------------V 64
GPGT GN G G +G G L G E ++G G G+ +
Sbjct: 751 GPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCI 810
Query: 65 RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G + G P +G + + K G DPG
Sbjct: 811 EGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPG 842
Score = 28.1 bits (61), Expect = 4.6
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQ 79
PG + G +GLLG G +G L G G G G +RG+Q G P +
Sbjct: 1115 PGPHGDLGFKGIKGLLGPPGIRGPPGLPG-----FPGSPGPMG-IRGDQGRDGIPGPAGE 1168
Query: 80 RG-TEAVKWKDGGLRDPGQWTSEPEQTEPS-PCLSG 113
+G T ++ G +PG ++ ++ P P L G
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPG 1204
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK-----RKGE----VEGQTGREG--KVRGEQ 68
PG + G +G LG G+ G L GK KGE + G G G RG
Sbjct: 705 PGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNS 764
Query: 69 SLHGD---PRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSG 113
HG+ P P GT + DG DPGQ EQ P C+ G
Sbjct: 765 GEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEG 812
Score = 33.1 bits (74), Expect = 0.14
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 28 WAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKW 87
+ GN G+LG GE G V G G G + G G+P P QRG+ +
Sbjct: 875 YPGNPGILGPPGEDG-----------VIGMMGFPGAI-GPPGPPGNPGTPGQRGSPGIPG 922
Query: 88 KDGGLRDPGQWTSEPEQTEPSP 109
G PG + ++ P P
Sbjct: 923 VKGQRGTPGAKGEQGDKGNPGP 944
Score = 31.6 bits (70), Expect = 0.42
Identities = 37/103 (35%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 6 AKNCHHAKGFWTLGPGTGPGTE-WAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKV 64
AK KGF GP PG + + G EGL G G KG L G TG +G V
Sbjct: 44 AKGEKGEKGF--PGPPGSPGQKGFTGPEGLPGPQGPKGFPGL--------PGLTGSKG-V 92
Query: 65 RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEP 107
RG L G P GT G + PG S+ EQ P
Sbjct: 93 RGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFP 135
Score = 31.2 bits (69), Expect = 0.54
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 19 GPGTGPGTEWA-GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKV--------RGEQS 69
GP PGT G+ G+ G G++GT +G+ +G G G +GE
Sbjct: 904 GPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGE-----QGDKGNPGPSEISHVIGDKGEPG 958
Query: 70 LHGDPRRPHQRGTEAVKWKDG 90
L G P ++G V G
Sbjct: 959 LKGFAGNPGEKGNRGVPGMPG 979
Score = 30.4 bits (67), Expect = 0.93
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--KGEVEGQTGREGKVRGEQSLHGDPRR 76
GP PG G GL GT G G G+ +GE+ T V G G P
Sbjct: 611 GPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVST----PVPGPPGPPGPPGH 666
Query: 77 PHQRGTEAVKWKDGGLRDPG 96
P +G + G DPG
Sbjct: 667 PGPQGPPGIPGSLGKCGDPG 686
Score = 30.4 bits (67), Expect = 0.93
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREGKVRGEQSLHGDPRRPH 78
PGT G G G G G RGK K G G G+ +G + G+P
Sbjct: 1363 PGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPGPAGE-KGNKGSKGEPGPAG 1421
Query: 79 QRGTEAVKWKDGGLRDPGQWTS 100
G +K K G P WT+
Sbjct: 1422 SDGLPGLKGKRGDSGSPATWTT 1443
Score = 29.3 bits (64), Expect = 2.1
Identities = 34/110 (30%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR-----------KGEVEGQTGREGKV--- 64
GP PGT AG+ G G +G GT L G R KGE +G G G +
Sbjct: 1277 GPKGPPGT--AGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGE-KGNPGFLGSIGPP 1333
Query: 65 -----RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
+G + GDP GT + G PG Q EP P
Sbjct: 1334 GPIGPKGPPGVRGDP------GTLKIISLPGSPGPPGTPGEPGMQGEPGP 1377
Score = 28.9 bits (63), Expect = 2.7
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQ 79
PG+ PG+ G G G G KG++ RG+ + G G G G L G P P
Sbjct: 380 PGS-PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPG-CAGSPGLPGSPGPPGP 437
Query: 80 RG 81
G
Sbjct: 438 PG 439
Score = 28.1 bits (61), Expect = 4.6
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGK-------------V 64
GPGT GN G G +G G L G E ++G G G+ +
Sbjct: 751 GPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCI 810
Query: 65 RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G + G P +G + + K G DPG
Sbjct: 811 EGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPG 842
Score = 28.1 bits (61), Expect = 4.6
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQ 79
PG + G +GLLG G +G L G G G G +RG+Q G P +
Sbjct: 1115 PGPHGDLGFKGIKGLLGPPGIRGPPGLPG-----FPGSPGPMG-IRGDQGRDGIPGPAGE 1168
Query: 80 RG-TEAVKWKDGGLRDPGQWTSEPEQTEPS-PCLSG 113
+G T ++ G +PG ++ ++ P P L G
Sbjct: 1169 KGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPG 1204
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR----KGEV---EGQTGREGKVRGEQSLH 71
GP PG G +GL G G++G +GK G V +G TG G + GE+
Sbjct: 943 GPKGPPGPP--GKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI-GERGHP 999
Query: 72 GDPRRPHQRGTEAVKWKDGGLRDPG 96
G P P ++G K+G DPG
Sbjct: 1000 GPPGPPGEQGLPGAAGKEGAKGDPG 1024
Score = 31.2 bits (69), Expect = 0.54
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 17 TLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR----KGEVEGQTGREGKVR-----GE 67
T GP PG G +G G GEKG +G + + V+G G G GE
Sbjct: 1079 TAGPIGLPGRP--GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1136
Query: 68 QSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G+ P Q+G++ K ++G PG
Sbjct: 1137 DGDKGEIGEPGQKGSKGDKGENGPPGPPG 1165
Score = 31.2 bits (69), Expect = 0.54
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRG--KRKGEV-----EGQTGREGKVRGEQSLHG 72
PG G G G G G+KG E RG G + G G +G+ G+ G
Sbjct: 1173 PGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGE-NGDVGPMG 1231
Query: 73 DPRRPHQRGTEAVKWKDGGLRDPG 96
P P RG + DG PG
Sbjct: 1232 PPGPPGPRGPQGPNGADGPQGPPG 1255
Score = 30.8 bits (68), Expect = 0.71
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 19 GPGTGPGTEWA-GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRP 77
GP G + G+ G +G VGEKG G E G RGE+ G P
Sbjct: 1243 GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1302
Query: 78 HQRGTEAVKWKDGGLRDPG 96
G + DG +PG
Sbjct: 1303 GPPGAKGPPGDDGPKGNPG 1321
Score = 27.7 bits (60), Expect = 6.0
Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 20/100 (20%)
Query: 29 AGNEGLLGTVGEKGTEALRGKRKGEV-----------------EGQTGREGKVR--GEQS 69
AGN G G G G + RG+ KGE +G G G V G+
Sbjct: 1272 AGNPGPPGEAGVGGPKGERGE-KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG 1330
Query: 70 LHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
G+P Q G K +DG PG E P P
Sbjct: 1331 PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1370
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR----KGEV---EGQTGREGKVRGEQSLH 71
GP PG G +GL G G++G +GK G V +G TG G + GE+
Sbjct: 892 GPKGPPGPP--GKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI-GERGHP 948
Query: 72 GDPRRPHQRGTEAVKWKDGGLRDPG 96
G P P ++G K+G DPG
Sbjct: 949 GPPGPPGEQGLPGAAGKEGAKGDPG 973
Score = 31.2 bits (69), Expect = 0.54
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 17 TLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR----KGEVEGQTGREGKVR-----GE 67
T GP PG G +G G GEKG +G + + V+G G G GE
Sbjct: 1028 TAGPIGLPGRP--GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1085
Query: 68 QSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G+ P Q+G++ K ++G PG
Sbjct: 1086 DGDKGEIGEPGQKGSKGDKGENGPPGPPG 1114
Score = 31.2 bits (69), Expect = 0.54
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRG--KRKGEV-----EGQTGREGKVRGEQSLHG 72
PG G G G G G+KG E RG G + G G +G+ G+ G
Sbjct: 1122 PGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGE-NGDVGPMG 1180
Query: 73 DPRRPHQRGTEAVKWKDGGLRDPG 96
P P RG + DG PG
Sbjct: 1181 PPGPPGPRGPQGPNGADGPQGPPG 1204
Score = 30.8 bits (68), Expect = 0.71
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 19 GPGTGPGTEWA-GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRP 77
GP G + G+ G +G VGEKG G E G RGE+ G P
Sbjct: 1192 GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1251
Query: 78 HQRGTEAVKWKDGGLRDPG 96
G + DG +PG
Sbjct: 1252 GPPGAKGPPGDDGPKGNPG 1270
Score = 27.7 bits (60), Expect = 6.0
Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 20/100 (20%)
Query: 29 AGNEGLLGTVGEKGTEALRGKRKGEV-----------------EGQTGREGKVR--GEQS 69
AGN G G G G + RG+ KGE +G G G V G+
Sbjct: 1221 AGNPGPPGEAGVGGPKGERGE-KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG 1279
Query: 70 LHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
G+P Q G K +DG PG E P P
Sbjct: 1280 PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1319
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR----KGEV---EGQTGREGKVRGEQSLH 71
GP PG G +GL G G++G +GK G V +G TG G + GE+
Sbjct: 931 GPKGPPGPP--GKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI-GERGHP 987
Query: 72 GDPRRPHQRGTEAVKWKDGGLRDPG 96
G P P ++G K+G DPG
Sbjct: 988 GPPGPPGEQGLPGAAGKEGAKGDPG 1012
Score = 31.2 bits (69), Expect = 0.54
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 17 TLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR----KGEVEGQTGREGKVR-----GE 67
T GP PG G +G G GEKG +G + + V+G G G GE
Sbjct: 1067 TAGPIGLPGRP--GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1124
Query: 68 QSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G+ P Q+G++ K ++G PG
Sbjct: 1125 DGDKGEIGEPGQKGSKGDKGENGPPGPPG 1153
Score = 31.2 bits (69), Expect = 0.54
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRG--KRKGEV-----EGQTGREGKVRGEQSLHG 72
PG G G G G G+KG E RG G + G G +G+ G+ G
Sbjct: 1161 PGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGE-NGDVGPMG 1219
Query: 73 DPRRPHQRGTEAVKWKDGGLRDPG 96
P P RG + DG PG
Sbjct: 1220 PPGPPGPRGPQGPNGADGPQGPPG 1243
Score = 30.8 bits (68), Expect = 0.71
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 19 GPGTGPGTEWA-GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRP 77
GP G + G+ G +G VGEKG G E G RGE+ G P
Sbjct: 1231 GPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1290
Query: 78 HQRGTEAVKWKDGGLRDPG 96
G + DG +PG
Sbjct: 1291 GPPGAKGPPGDDGPKGNPG 1309
Score = 27.7 bits (60), Expect = 6.0
Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 20/100 (20%)
Query: 29 AGNEGLLGTVGEKGTEALRGKRKGEV-----------------EGQTGREGKVR--GEQS 69
AGN G G G G + RG+ KGE +G G G V G+
Sbjct: 1260 AGNPGPPGEAGVGGPKGERGE-KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPG 1318
Query: 70 LHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
G+P Q G K +DG PG E P P
Sbjct: 1319 PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1358
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 38.9 bits (89), Expect = 0.003
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 30 GNEGLLGTVGEKGTEALRGKR--KGEV--EGQTGREGKVRGEQSLHGDPRRPHQRGTEAV 85
G + L G GE+G + L GK +GE+ +G GR G+ +GE L G P P RG +
Sbjct: 244 GLKQLNGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGE-KGEAGLPGAPGFPGVRGEKGD 302
Query: 86 KWKDGGLRDPGQWTSEPEQTEPSP 109
+ + G L PG E+ E P
Sbjct: 303 QGEKGELGLPGLKGDRGEKGEAGP 326
Score = 30.0 bits (66), Expect = 1.2
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 19 GPGTGPGTEWA----------GNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVR-G 66
GP PG+ A G G G GE+G+ G R G G GK + G
Sbjct: 410 GPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDG 469
Query: 67 EQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
E L G P P GT+ + G PG
Sbjct: 470 EPGLRGSPGLPGPLGTKGDRGAPGIPGSPG 499
Score = 28.5 bits (62), Expect = 3.5
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK--RKGEVEGQTGREGKVRGEQSLHGDPRRP 77
PG G G G+VG G GK +GE +G G EG G GDP P
Sbjct: 400 PGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGE-KGAAGEEGS-PGPVGPRGDPGAP 457
Query: 78 HQRGTEAVKWKDG--GLR-DPG 96
G K KDG GLR PG
Sbjct: 458 GLPGPPG-KGKDGEPGLRGSPG 478
Score = 27.3 bits (59), Expect = 7.9
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 27/114 (23%)
Query: 19 GPGTGPGTE-WAGNEGLLGTVGEKGTEALRGKR--------------KGEVEGQTGREGK 63
GP PG + G++G+ G G +GTE +G+ +G +G+ G +G+
Sbjct: 567 GPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGS-QGERGADGE 625
Query: 64 V--RGEQ------SLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
V +G+Q G P P G + + G PG S ++ P P
Sbjct: 626 VGQKGDQGHPGVPGFMGPPGNPGPPGADGIA---GAAGPPGIQGSPGKEGPPGP 676
>gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]
Length = 666
Score = 38.9 bits (89), Expect = 0.003
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 123 PFLLLXLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSS 175
P L LPPPPPPP P L LLPL LLLL + + SSS S++
Sbjct: 16 PALAGPLPPPPPPPPP--------PLLPLLPLLLLLLLGAAEGARVSSSLSTT 60
>gi|98986321 gliomedin [Homo sapiens]
Length = 551
Score = 38.9 bits (89), Expect = 0.003
Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 9 CHHAKGFWTLGPGTGPGTEWAGN-------EGLLGTVGEKGTEALRGKR-KGEVEGQTGR 60
C+ KG GP PG AG +G G G KG + GKR K + G G
Sbjct: 129 CNSTKGICLTGPSGPPGPPGAGGLPGHNGLDGQPGPQGPKGEKGANGKRGKMGIPGAAGN 188
Query: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRD 94
G+ RGE+ HG+ G K + G D
Sbjct: 189 PGE-RGEKGDHGELGLQGNEGPPGQKGEKGDKGD 221
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 38.1 bits (87), Expect = 0.004
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR-----KGEV--EGQTGREGKVRGEQSLH 71
GP PG G +GL G G++G +GK G V +G TG G + GE+
Sbjct: 961 GPKGPPGPP--GKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPM-GERGHP 1017
Query: 72 GDPRRPHQRGTEAVKWKDGGLRDPG 96
G P P ++G + K+G DPG
Sbjct: 1018 GPPGPPGEQGLPGLAGKEGTKGDPG 1042
Score = 31.2 bits (69), Expect = 0.54
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 30 GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKWKD 89
G GL GT GEKG + G +G G ++G++ G P + G E K +
Sbjct: 799 GIRGLKGTKGEKGEDGFPG-----FKGDMG----IKGDRGEIGPPGPRGEDGPEGPKGRG 849
Query: 90 GGLRDPG 96
G DPG
Sbjct: 850 GPNGDPG 856
Score = 28.9 bits (63), Expect = 2.7
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 19 GPGTGPGTEWAGNE----GLLGTVGEKGTEALRG--KRKGEV-----EGQTGREGKVRGE 67
GP PG A E G G G+KG E RG G V G G +G+ G+
Sbjct: 1186 GPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGET-GD 1244
Query: 68 QSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G P P RG DG PG
Sbjct: 1245 VGQMGPPGPPGPRGPSGAPGADGPQGPPG 1273
Score = 28.1 bits (61), Expect = 4.6
Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 23/100 (23%)
Query: 29 AGNEGLLGTVGEKGTEALRGKRKGEV-----------------EGQTGREGKVR--GEQS 69
AG GL G G G + RG+ KGE +G G G V G+
Sbjct: 1290 AGEPGLPGEGGPPGPKGERGE-KGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPG 1348
Query: 70 LHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
G+P Q G K DG +PGQ S EP P
Sbjct: 1349 PPGEPGPAGQDGPPGDKGDDG---EPGQTGSPGPTGEPGP 1385
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 29 AGNEGLLGTVGEKGTEALRGKR--KGEVEGQTGREGKV--------RGEQSLHGDPRRPH 78
AG G G VGE+GT+ G + KG G G+EG+V GEQ +G P R
Sbjct: 1424 AGERGAPGPVGEQGTKGCYGTKGPKGN-RGLNGQEGEVGENGIDGLNGEQGDNGLPGRKG 1482
Query: 79 QRGTEAVKWKDGGLRDPG 96
++G E + G PG
Sbjct: 1483 EKGDEGSQGSPGKRGTPG 1500
Score = 36.2 bits (82), Expect = 0.017
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 15/79 (18%)
Query: 30 GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRR------------P 77
G +G GT G KG L G+ +GEV G+ G +G + GEQ +G P R P
Sbjct: 1437 GTKGCYGTKGPKGNRGLNGQ-EGEV-GENGIDG-LNGEQGDNGLPGRKGEKGDEGSQGSP 1493
Query: 78 HQRGTEAVKWKDGGLRDPG 96
+RGT + G DPG
Sbjct: 1494 GKRGTPGDRGAKGLRGDPG 1512
Score = 32.7 bits (73), Expect = 0.19
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 26/109 (23%)
Query: 23 GPGTEWAGNEGLLGTVGEK---------------GTEALRGKRKGEVEGQTGREGKVRGE 67
GPG E AGN+G LG+ G K G L+G G GR+G +G+
Sbjct: 1609 GPGGE-AGNQGRLGSQGNKGEPGDLGEKGAVGFPGPRGLQGNDGSPGYGSVGRKG-AKGQ 1666
Query: 68 QSLH---------GDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEP 107
+ GDP P + G + + K PG+ S E P
Sbjct: 1667 EGFPGESGPKGEIGDPGGPGETGLKGARGKMISAGLPGEMGSPGEPGPP 1715
Score = 31.2 bits (69), Expect = 0.54
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 30 GNEGLLGTVGEKGTEALRGKR-----------KGEVEGQTGREGKVRGEQSLHGDPRRPH 78
G+EG G+ G++GT RG + +EG TG +G+ RG Q G P P
Sbjct: 1485 GDEGSQGSPGKRGTPGDRGAKGLRGDPGAPGVDSSIEGPTGLKGE-RGRQGRRGWPGPPG 1543
Query: 79 QRGT 82
G+
Sbjct: 1544 TPGS 1547
Score = 30.4 bits (67), Expect = 0.93
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 4 SRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--KGEVEGQTGRE 61
SR K H + T GP G G +GL G++G KG + RG+ KGE +G G +
Sbjct: 1547 SRRKTAAHGRRGHT-GPQGTAGIP--GPDGLEGSLGLKGPQGPRGEAGVKGE-KGGVGSK 1602
Query: 62 GKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G +G G+ + G++ K + G L + G
Sbjct: 1603 GP-QGPPGPGGEAGNQGRLGSQGNKGEPGDLGEKG 1636
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 38.1 bits (87), Expect = 0.004
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 18 LGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGK--------VRGEQS 69
+GP PG A + ++G G KG + G G++ G+ G +G +GE
Sbjct: 2286 VGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAG 2345
Query: 70 LHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G+P P + G + G DPG
Sbjct: 2346 RAGEPGDPGEDGQKGAPGPKGFKGDPG 2372
Score = 34.7 bits (78), Expect = 0.049
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 30 GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKWKD 89
G G G+VG G L+G + G G G+ RGE + G+ RP Q G +
Sbjct: 2440 GPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGE-RGEPGIRGEDGRPGQEGPRGLTGPP 2498
Query: 90 GGLRDPGQ 97
G + G+
Sbjct: 2499 GSRGERGE 2506
Score = 34.3 bits (77), Expect = 0.064
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 29 AGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGK--VRGEQSLHGD------PRRPHQR 80
+G +G G G G GK G GR+G +RGEQ L G P +P +
Sbjct: 1781 SGLDGKPGAAGPSGPNGAAGKA-----GDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGED 1835
Query: 81 GTEAVKWKDGGLRDPGQ 97
G + K+G DPG+
Sbjct: 1836 GKPGLNGKNGEPGDPGE 1852
Score = 33.5 bits (75), Expect = 0.11
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 19 GPGTG-----PGTEWA----GNEGLLGTVGEKGTEALRGKRKGEV--EGQTGREGKVRGE 67
GPG PG + A G+ G G G++G ++G R GE GQ G G + GE
Sbjct: 2100 GPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDR-GEPGPRGQDGNPG-LPGE 2157
Query: 68 QSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
+ + G +P +G GG DPG
Sbjct: 2158 RGMAGPEGKPGLQGPRGPPGPVGGHGDPG 2186
Score = 32.0 bits (71), Expect = 0.32
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 17 TLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKV--RGEQSLHGDP 74
T GP PG + + +E G GE+G L+G KGE G G +G RG + GD
Sbjct: 2083 TPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKG-AKGE-PGSNGDQGPKGDRGVPGIKGDR 2140
Query: 75 RRPHQRGTEAVKWKDGGLRDPGQ 97
P RG +DG PG+
Sbjct: 2141 GEPGPRG------QDGNPGLPGE 2157
Score = 31.6 bits (70), Expect = 0.42
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK---------RKGEVEGQTGREGKVRGEQSL 70
PG G+ G G GE G G+ KGE G G+EG RG +
Sbjct: 1678 PGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGE-PGDRGQEGP-RGPKGD 1735
Query: 71 HGDPRRPHQRGTEAVKWKDGGLRDPG 96
G P P +RG E + G DPG
Sbjct: 1736 PGLPGAPGERGIEGFRGPPGPQGDPG 1761
Score = 30.8 bits (68), Expect = 0.71
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--KGE-----VEGQTGREGKVRGEQSLHG 72
PG+ PG AGN G G G KG+ L G R GE +G+ G G+V G + G
Sbjct: 1307 PGS-PGR--AGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEG-PG 1362
Query: 73 DPRRPHQRGTEAVKWKDGGLRDPG 96
P R G G L DPG
Sbjct: 1363 LPGRKGDPGPSGPPGPRGPLGDPG 1386
Score = 29.3 bits (64), Expect = 2.1
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 20 PGTGPGTEWA-GNEGLLGTVGEKGTEALRGKR-----KGE-----VEGQTGREGKVRGEQ 68
PG PG A G EGL+G G++G + G + KGE + G G G G
Sbjct: 2664 PGV-PGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGN-DGSA 2721
Query: 69 SLHGDPRRPHQRGTEAVKWKDGGLRDPGQ 97
G P RG E ++ + G PG+
Sbjct: 2722 GPPGPPGSVGPRGPEGLQGQKGERGPPGE 2750
Score = 28.9 bits (63), Expect = 2.7
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 24 PGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTE 83
PG G+ G G G++G L G+ G G G GE+ GDP RP G
Sbjct: 1577 PGLVLPGDPGPKGDPGDRGPIGLTGRA-----GPPGDSGPP-GEK---GDPGRPGPPGPV 1627
Query: 84 AVKWKDGGLRDPG 96
+ +DG + + G
Sbjct: 1628 GPRGRDGEVGEKG 1640
Score = 28.9 bits (63), Expect = 2.7
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 30 GNEGLLGTVGEKGTEALRGKR--KGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKW 87
G GL G G KG L G++ KGE G GR G + G + G+P P Q G +
Sbjct: 2620 GPRGLKGERGVKGACGLDGEKGDKGEA-GPPGRPG-LAGHKGEMGEPGVPGQSGAPGKEG 2677
Query: 88 KDGGLRDPG 96
G D G
Sbjct: 2678 LIGPKGDRG 2686
Score = 28.9 bits (63), Expect = 2.7
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-------VEGQTGREGK--VRGEQSL 70
PG AG G G+VG +G E L+G +KGE V G G G RGEQ
Sbjct: 2712 PGPSGNDGSAGPPGPPGSVGPRGPEGLQG-QKGERGPPGERVVGAPGVPGAPGERGEQGR 2770
Query: 71 HGDPRRPHQRGTEAVKWKD 89
G P P EA +D
Sbjct: 2771 PG-PAGPRGEKGEAALTED 2788
Score = 28.5 bits (62), Expect = 3.5
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 30 GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQ------SLHGDPRRPHQRGTE 83
G EG +G GE+G + RG G G G GE+ L G+P +P G
Sbjct: 1991 GKEGPIGFPGERGLKGDRGD-----PGPQGPPGLALGERGPPGPSGLAGEPGKP---GIP 2042
Query: 84 AVKWKDGGLRDPGQWTSEPEQTE 106
+ + GG+ + G+ E+ E
Sbjct: 2043 GLPGRAGGVGEAGRPGERGERGE 2065
Score = 28.1 bits (61), Expect = 4.6
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK--RKGEVEGQTGREGKVRGEQSLHGDPRR- 76
PG G G+ G VGEKG + G+ R G G +G +G RGE G P R
Sbjct: 1651 PGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGS-PGSSGPKGD-RGEPGPPGPPGRL 1708
Query: 77 ------------PHQRGTEAVKWKDGGLRDPG 96
P RG E + G DPG
Sbjct: 1709 VDTGPGAREKGEPGDRGQEGPRGPKG---DPG 1737
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 38.1 bits (87), Expect = 0.004
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKV-RGEQSLHGDPRRP 77
GP PG G G++G VG+ G +GKR G+ G G+V RG + G P P
Sbjct: 571 GPHGHPGPR--GVPGIVGAVGQIGNTGPKGKR-----GEKGDPGEVGRGHPGMPGPPGIP 623
Query: 78 HQRGT--EAVKWKDGGLRDPG 96
G +A+ KDG PG
Sbjct: 624 GLPGRPGQAINGKDGDRGSPG 644
Score = 33.9 bits (76), Expect = 0.084
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQ 79
PG G G G VG+ G L G+ KGE +G++G G +G+Q + G+P P
Sbjct: 423 PGVKGDKGSPGKTGPRGKVGDPGVAGLPGE-KGE-KGESGEPGP-KGQQGVRGEPGYPGP 479
Query: 80 RGTEAVKWKDGGLRDPG 96
G G PG
Sbjct: 480 SGDAGAPGVQGYPGPPG 496
Score = 31.2 bits (69), Expect = 0.54
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 21/111 (18%)
Query: 19 GPGTGPGTEWA-GNEGLLGTVGEKGTEALRGKRKGEVE----GQTGREGKVRGEQSLHGD 73
GP PG G EG G GE G + + G++ + E GQ G +G+ +G + G
Sbjct: 355 GPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGR-QGPKGEQGP 413
Query: 74 PRRPHQRGTEAVKWKDG-----GLRD----------PGQWTSEPEQTEPSP 109
P P +G VK G G R PG+ + E EP P
Sbjct: 414 PGIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGP 464
Score = 27.3 bits (59), Expect = 7.9
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 28/112 (25%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-----------VEGQTGREGKVRGE 67
GP PG +AG G G VG G +RG KG+ G+ GR G ++G
Sbjct: 108 GPPGLPGPGFAGPPGPPGPVGLPGEIGIRGP-KGDPGPDGPSGPPGPPGKPGRPGTIQGL 166
Query: 68 QSL----------HGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
+ G P +G + K G L DPG Q +P P
Sbjct: 167 EGSADFLCPTNCPPGMKGPPGLQGVKGHAGKRGILGDPG------HQGKPGP 212
>gi|13994280 C1q and tumor necrosis factor related protein 7 isoform
b [Homo sapiens]
Length = 289
Score = 37.4 bits (85), Expect = 0.008
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 24 PGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTE 83
PG + G +G G GEKGT LRGK TG G + GE+ G+ + G E
Sbjct: 61 PGRD--GRDGRKGEKGEKGTAGLRGK--------TGPLG-LAGEKGDQGETGKKGPIGPE 109
Query: 84 AVKWKDGGLRDPGQWTSEPEQTE---PSPCLSGCLLL 117
K + G + PG EQ + P C G ++L
Sbjct: 110 GEKGEVGPIGPPGPKGDRGEQGDPGLPGVCRCGSIVL 146
>gi|206597454 C1q and tumor necrosis factor related protein 7
isoform b [Homo sapiens]
Length = 289
Score = 37.4 bits (85), Expect = 0.008
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 24 PGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTE 83
PG + G +G G GEKGT LRGK TG G + GE+ G+ + G E
Sbjct: 61 PGRD--GRDGRKGEKGEKGTAGLRGK--------TGPLG-LAGEKGDQGETGKKGPIGPE 109
Query: 84 AVKWKDGGLRDPGQWTSEPEQTE---PSPCLSGCLLL 117
K + G + PG EQ + P C G ++L
Sbjct: 110 GEKGEVGPIGPPGPKGDRGEQGDPGLPGVCRCGSIVL 146
>gi|206597452 C1q and tumor necrosis factor related protein 7
isoform a [Homo sapiens]
Length = 296
Score = 37.4 bits (85), Expect = 0.008
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 24 PGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTE 83
PG + G +G G GEKGT LRGK TG G + GE+ G+ + G E
Sbjct: 68 PGRD--GRDGRKGEKGEKGTAGLRGK--------TGPLG-LAGEKGDQGETGKKGPIGPE 116
Query: 84 AVKWKDGGLRDPGQWTSEPEQTE---PSPCLSGCLLL 117
K + G + PG EQ + P C G ++L
Sbjct: 117 GEKGEVGPIGPPGPKGDRGEQGDPGLPGVCRCGSIVL 153
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 37.4 bits (85), Expect = 0.008
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 30 GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKWKD 89
G++G G G+KGT ++G+R GE G+ G G RGE G P P G
Sbjct: 981 GDDGFPGERGDKGTPGMQGRR-GE-PGRYGPPGFHRGEPGEKGQPGPPGPPGPPGSTGLR 1038
Query: 90 GGLRDPGQWTSEPEQTEPSP 109
G + PG + E P P
Sbjct: 1039 GFIGFPGLPGDQGEPGSPGP 1058
Score = 37.0 bits (84), Expect = 0.010
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 14 GFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHG 72
G W G GP T + G GL+G G+ G L+G V+GQ G G+V G+Q G
Sbjct: 199 GSWGAGGPAGP-TGYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQMGDPGEV-GQQGSPG 255
Score = 34.7 bits (78), Expect = 0.049
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 9 CHHAKGFWTLGPGTGPGTEWA-GNEGLLGTVGEKGTEALRGKR--------KGEVEGQTG 59
CH + GP PG + G G G +G G + +RG R KG+ +G TG
Sbjct: 55 CHCVPEKGSRGPPGPPGPQGPIGPLGAPGPIGLSGEKGMRGDRGPPGAAGDKGD-KGPTG 113
Query: 60 REGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G G + G P P RG + +G DPG
Sbjct: 114 VPG-FPGLDGIPGHPGPPGPRGKPGMSGHNGSRGDPG 149
Score = 34.3 bits (77), Expect = 0.064
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 23/106 (21%)
Query: 24 PGTEWAGNEGLLGTVGEKGTEALRGKR-----KGEVEGQTGREGKVR--------GEQSL 70
PG E G G G GEKG L G R KG + G G EG++ GE
Sbjct: 923 PGAE--GCPGAKGEPGEKGMSGLPGDRGLRGAKGAI-GPPGDEGEMAIISQKGTPGEPGP 979
Query: 71 HGDPRRPHQRGTEAVKWKDGGLRDPGQW------TSEP-EQTEPSP 109
GD P +RG + G +PG++ EP E+ +P P
Sbjct: 980 PGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGP 1025
Score = 33.1 bits (74), Expect = 0.14
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 12 AKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLH 71
A F GP PG+ G G G GE+G ++G R G GR G
Sbjct: 1078 ASHFGPPGPKGEPGSP--GCPGHFGASGEQGLPGIQGPR-----GSPGRPGPPGSS---- 1126
Query: 72 GDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
G P P G ++ + G + DPG + + P P
Sbjct: 1127 GPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGP 1164
Score = 29.6 bits (65), Expect = 1.6
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 28 WAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKV--------RGEQSLHGDPRRPH 78
W G +G G G +G L GK G G +G + +GE+ G P P
Sbjct: 522 WLGTKGDPGPPGAEGPPGLPGKHGASGPPGNKGAKGDMVVSRVKGHKGERGPDGPPGFPG 581
Query: 79 QRGTEAVKWKDGGLRDPG 96
Q G+ G DPG
Sbjct: 582 QPGSHGRDGHAGEKGDPG 599
Score = 29.3 bits (64), Expect = 2.1
Identities = 28/88 (31%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQ 79
PG G G G LG GE KGE G V+G Q GDP P
Sbjct: 148 PGFPGGRGALGPGGPLGHPGE----------KGEKGNSVFILGAVKGIQGDRGDPGLPGL 197
Query: 80 RGTEAVKWKDGGLRDPGQWTSEPEQTEP 107
G+ W GG P + EP P
Sbjct: 198 PGS----WGAGGPAGPTGYPGEPGLVGP 221
Score = 29.3 bits (64), Expect = 2.1
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDP--RR 76
GP PG GL G G+KGT+ G G G G ++GE+ G P
Sbjct: 1169 GPSGSPGLN-----GLHGLKGQKGTKGASGLHDVGPPGPVGIPG-LKGERGDPGSPGISP 1222
Query: 77 PHQRGTEAVKWKDGGLRDPG 96
P RG + G PG
Sbjct: 1223 PGPRGKKGPPGPPGSSGPPG 1242
Score = 28.9 bits (63), Expect = 2.7
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPH 78
GP PG G +GL G G KG L G R G+ G V + G P P
Sbjct: 1334 GPHGFPGPP--GEKGLPGPPGRKGPTGLPGPR-----GEPGPPADVDDCPRIPGLPGAPG 1386
Query: 79 QRGTEAVKWKDGGLRDP 95
RG E G+R P
Sbjct: 1387 MRGPEGAMGLP-GMRGP 1402
Score = 28.5 bits (62), Expect = 3.5
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-------VEGQTGREGKV-----RGE 67
PG G G+ G G G KG L G+ + G G +G +G
Sbjct: 848 PGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGP 907
Query: 68 QSLHGDPRRPHQRGTEAVKWKDGGLRDPGQ 97
+ L G P P +RG + G +PG+
Sbjct: 908 RGLPGFPGFPGERGKPGAEGCPGAKGEPGE 937
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 36.6 bits (83), Expect = 0.013
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 30 GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTE 83
G++GL G+ GEKG RG + G G +G+ RG+ + GDP P Q E
Sbjct: 1913 GDKGLPGSSGEKGNPGRRGDK-----GPRGEKGE-RGDVGIRGDPGNPGQDSQE 1960
Score = 28.9 bits (63), Expect = 2.7
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 25 GTEWAGNEGLLGTVGEKGTEALRGKR--KGE--VEGQTGREGKVRGEQSLHGDPRRPHQR 80
G + G+EG G GE+G G + GE + G TG +G +RG + G P Q+
Sbjct: 2091 GRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKG-IRGRRGNSGPPGIVGQK 2149
Query: 81 G 81
G
Sbjct: 2150 G 2150
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 36.6 bits (83), Expect = 0.013
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 30 GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTE 83
G++GL G+ GEKG RG + G G +G+ RG+ + GDP P Q E
Sbjct: 2119 GDKGLPGSSGEKGNPGRRGDK-----GPRGEKGE-RGDVGIRGDPGNPGQDSQE 2166
Score = 28.9 bits (63), Expect = 2.7
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 25 GTEWAGNEGLLGTVGEKGTEALRGKR--KGE--VEGQTGREGKVRGEQSLHGDPRRPHQR 80
G + G+EG G GE+G G + GE + G TG +G +RG + G P Q+
Sbjct: 2297 GRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKG-IRGRRGNSGPPGIVGQK 2355
Query: 81 G 81
G
Sbjct: 2356 G 2356
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 36.6 bits (83), Expect = 0.013
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 30 GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTE 83
G++GL G+ GEKG RG + G G +G+ RG+ + GDP P Q E
Sbjct: 1512 GDKGLPGSSGEKGNPGRRGDK-----GPRGEKGE-RGDVGIRGDPGNPGQDSQE 1559
Score = 28.9 bits (63), Expect = 2.7
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 25 GTEWAGNEGLLGTVGEKGTEALRGKR--KGE--VEGQTGREGKVRGEQSLHGDPRRPHQR 80
G + G+EG G GE+G G + GE + G TG +G +RG + G P Q+
Sbjct: 1690 GRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKG-IRGRRGNSGPPGIVGQK 1748
Query: 81 G 81
G
Sbjct: 1749 G 1749
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,179,385
Number of Sequences: 37866
Number of extensions: 614052
Number of successful extensions: 7953
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 6151
Number of HSP's gapped (non-prelim): 1432
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.