Guide to the Human Genome
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Name: GLDN Sequence: fasta or formatted (551aa) NCBI GI: 98986321
Description:

gliomedin

Referenced in:

Oligodendrocytes and Myelin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         47           2
 C cysteine            1.1          6           1
 D aspartate           4.9         27           2
 E glutamate           4.9         27           1
 F phenylalanine       3.4         19           1
 G glycine            12.9         71           2
 H histidine           2.7         15           2
 I isoleucine          3.1         17           2
 K lysine              4.9         27           1
 L leucine             8.5         47           2
 M methionine          2.7         15           3
 N asparagine          4.5         25           2
 P proline             7.6         42           2
 Q glutamine           4.2         23           1
 R arginine            5.3         29           2
 S serine              7.4         41           2
 T threonine           4.5         25           2
 V valine              4.7         26           2
 W tryptophan          1.1          6           1
 Y tyrosine            2.9         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gliomedin 
OLFM1                 0.104   olfactomedin related ER localized protein isoform 1 ...
OLFM2                 0.099   olfactomedin 2 
COL5A1                0.094   alpha 1 type V collagen preproprotein 
COL15A1               0.091   alpha 1 type XV collagen precursor 
COL11A1               0.089   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.089   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.089   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL11A2               0.089   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.089   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.089   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL13A1               0.089   alpha 1 type XIII collagen isoform 19 
COL13A1               0.089   alpha 1 type XIII collagen isoform 17 
COL13A1               0.089   alpha 1 type XIII collagen isoform 15 
COL13A1               0.089   alpha 1 type XIII collagen isoform 5 
COL1A1                0.088   alpha 1 type I collagen preproprotein 
COL4A5                0.087   type IV collagen alpha 5 isoform 2 precursor 
COL13A1               0.087   alpha 1 type XIII collagen isoform 20 
COL13A1               0.087   alpha 1 type XIII collagen isoform 18 
COL13A1               0.087   alpha 1 type XIII collagen isoform 16 
COL13A1               0.087   alpha 1 type XIII collagen isoform 14 
COL13A1               0.087   alpha 1 type XIII collagen isoform 13 
COL13A1               0.087   alpha 1 type XIII collagen isoform 12 
COL13A1               0.087   alpha 1 type XIII collagen isoform 11 
COL13A1               0.087   alpha 1 type XIII collagen isoform 10 
COL13A1               0.087   alpha 1 type XIII collagen isoform 9 
COL13A1               0.087   alpha 1 type XIII collagen isoform 7 
COL13A1               0.087   alpha 1 type XIII collagen isoform 6 
COL13A1               0.087   alpha 1 type XIII collagen isoform 4 
COL13A1               0.087   alpha 1 type XIII collagen isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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