Guide to the Human Genome
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Name: LOC100288635 Sequence: fasta or formatted (257aa) NCBI GI: 239744535
Description:

PREDICTED: hypothetical protein XP_002343184

Not currently referenced in the text

Other entries for this name:
alt mRNA {257aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7          7           1
 C cysteine            1.2          3           1
 D aspartate           1.2          3           1
 E glutamate           4.7         12           1
 F phenylalanine       6.6         17           2
 G glycine             8.6         22           2
 H histidine           2.3          6           2
 I isoleucine          0.4          1           1
 K lysine              3.5          9           1
 L leucine            23.0         59           7
 M methionine          0.4          1           1
 N asparagine          0.8          2           1
 P proline            13.2         34           7
 Q glutamine           1.9          5           1
 R arginine            3.5          9           2
 S serine             17.9         46           7
 T threonine           4.7         12           1
 V valine              1.6          4           1
 W tryptophan          1.6          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343184 
LOC100288635          1.000   PREDICTED: hypothetical protein 
LOC100292628          0.646   PREDICTED: hypothetical protein 
SCAF1                 0.045   SR-related CTD-associated factor 1 
TNRC18                0.045   trinucleotide repeat containing 18 
ACR                   0.045   acrosin precursor 
NRXN2                 0.043   neurexin 2 isoform beta precursor 
LOC645529             0.043   PREDICTED: similar to Putative acrosin-like proteas...
PRDM2                 0.038   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.038   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.038   retinoblastoma protein-binding zinc finger protein i...
ATN1                  0.038   atrophin-1 
ATN1                  0.038   atrophin-1 
ZBTB4                 0.038   zinc finger and BTB domain containing 4 
ZBTB4                 0.038   zinc finger and BTB domain containing 4 
LOC100133142          0.036   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.036   PREDICTED: similar to zinc finger protein 208 [Homo...
BAI1                  0.034   brain-specific angiogenesis inhibitor 1 precursor [...
COL27A1               0.034   collagen, type XXVII, alpha 1 
COL22A1               0.032   collagen, type XXII, alpha 1 
LOC100293477          0.032   PREDICTED: hypothetical protein 
LOC100290542          0.032   PREDICTED: hypothetical protein XP_002347792 
LOC100288090          0.032   PREDICTED: hypothetical protein XP_002343558 
SRRM2                 0.032   splicing coactivator subunit SRm300 
COL6A2                0.030   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.030   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL6A2                0.030   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
PCLO                  0.030   piccolo isoform 2 
PCLO                  0.030   piccolo isoform 1 
WNK4                  0.030   WNK lysine deficient protein kinase 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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