Guide to the Human Genome
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Name: NRXN2 Sequence: fasta or formatted (666aa) NCBI GI: 21166382
Description:

neurexin 2 isoform beta precursor

Referenced in:

Neurons

Other entries for this name:
alt prot [1712aa] neurexin 2 isoform alpha-1 precursor
alt prot [1642aa] neurexin 2 isoform alpha-2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         57           4
 C cysteine            0.9          6           1
 D aspartate           5.7         38           2
 E glutamate           4.7         31           2
 F phenylalanine       2.9         19           1
 G glycine             9.2         61           2
 H histidine           2.0         13           2
 I isoleucine          3.6         24           2
 K lysine              2.6         17           2
 L leucine             9.5         63           7
 M methionine          1.4          9           1
 N asparagine          3.3         22           1
 P proline            12.6         84          10
 Q glutamine           2.6         17           1
 R arginine            6.6         44           2
 S serine              6.8         45           3
 T threonine           8.6         57           4
 V valine              5.9         39           2
 W tryptophan          0.5          3           1
 Y tyrosine            2.6         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurexin 2 isoform beta precursor 
NRXN2                 0.858   neurexin 2 isoform alpha-1 precursor 
NRXN2                 0.800   neurexin 2 isoform alpha-2 precursor 
NRXN1                 0.310   neurexin 1 isoform alpha2 precursor 
NRXN1                 0.295   neurexin 1 isoform beta precursor 
NRXN3                 0.295   neurexin 3 isoform 3 precursor 
NRXN3                 0.258   neurexin 3 isoform 2 precursor 
NRXN1                 0.255   neurexin 1 isoform alpha1 precursor 
NRXN3                 0.227   neurexin 3 isoform 1 precursor 
PRR12                 0.024   proline rich 12 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.022   PREDICTED: hypothetical protein LOC80164 
TENC1                 0.021   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.021   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.021   tensin like C1 domain containing phosphatase isoform...
SYN1                  0.020   synapsin I isoform Ia 
SYN1                  0.020   synapsin I isoform Ib 
CEL                   0.019   carboxyl ester lipase precursor 
ZC3H4                 0.019   zinc finger CCCH-type containing 4 
MUC2                  0.019   mucin 2 precursor 
HCN4                  0.017   hyperpolarization activated cyclic nucleotide-gated p...
PRG4                  0.017   proteoglycan 4 isoform D 
PRG4                  0.017   proteoglycan 4 isoform C 
PRG4                  0.017   proteoglycan 4 isoform B 
PRG4                  0.017   proteoglycan 4 isoform A 
C2orf55               0.017   hypothetical protein LOC343990 
RNF215                0.017   ring finger protein 215 
COL1A1                0.016   alpha 1 type I collagen preproprotein 
COL5A1                0.016   alpha 1 type V collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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