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Search of human proteins with 239754651
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo
sapiens]
(368 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo ... 752 0.0
gi|239749205 PREDICTED: hypothetical protein XP_002346953 [Homo ... 502 e-142
gi|239743285 PREDICTED: hypothetical protein XP_002342817 [Homo ... 502 e-142
gi|239508969 PREDICTED: hypothetical protein [Homo sapiens] 502 e-142
gi|110832843 TBP-associated factor 4 [Homo sapiens] 55 1e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 51 1e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 51 1e-06
gi|117938759 GNAS complex locus XLas [Homo sapiens] 51 2e-06
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 50 3e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 49 9e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 48 2e-05
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 48 2e-05
gi|18079216 CASK interacting protein 1 [Homo sapiens] 47 2e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 47 3e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 47 3e-05
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 47 4e-05
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 46 6e-05
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 45 8e-05
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 45 8e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 45 1e-04
gi|12707580 paired-like homeobox 2b [Homo sapiens] 45 1e-04
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 45 1e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 45 1e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 45 1e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 45 1e-04
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 45 1e-04
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 45 1e-04
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 45 1e-04
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 45 1e-04
gi|91208420 bassoon protein [Homo sapiens] 44 2e-04
>gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo
sapiens]
Length = 368
Score = 752 bits (1942), Expect = 0.0
Identities = 368/368 (100%), Positives = 368/368 (100%)
Query: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR
Sbjct: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
Query: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP
Sbjct: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
Query: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV
Sbjct: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
Query: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP
Sbjct: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
Query: 241 SPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKAR 300
SPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKAR
Sbjct: 241 SPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKAR 300
Query: 301 GSRSRRRYLWRWDSAAGVAGGARAALSSSAAEAAAAAAAAAAARMDFLSGPSPAASAASP 360
GSRSRRRYLWRWDSAAGVAGGARAALSSSAAEAAAAAAAAAAARMDFLSGPSPAASAASP
Sbjct: 301 GSRSRRRYLWRWDSAAGVAGGARAALSSSAAEAAAAAAAAAAARMDFLSGPSPAASAASP 360
Query: 361 ERRDPARQ 368
ERRDPARQ
Sbjct: 361 ERRDPARQ 368
>gi|239749205 PREDICTED: hypothetical protein XP_002346953 [Homo
sapiens]
Length = 261
Score = 502 bits (1292), Expect = e-142
Identities = 243/246 (98%), Positives = 244/246 (99%)
Query: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR
Sbjct: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
Query: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP
Sbjct: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
Query: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV
Sbjct: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
Query: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP
Sbjct: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
Query: 241 SPLRSG 246
SP+ G
Sbjct: 241 SPVWPG 246
>gi|239743285 PREDICTED: hypothetical protein XP_002342817 [Homo
sapiens]
Length = 261
Score = 502 bits (1292), Expect = e-142
Identities = 243/246 (98%), Positives = 244/246 (99%)
Query: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR
Sbjct: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
Query: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP
Sbjct: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
Query: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV
Sbjct: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
Query: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP
Sbjct: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
Query: 241 SPLRSG 246
SP+ G
Sbjct: 241 SPVWPG 246
>gi|239508969 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 502 bits (1292), Expect = e-142
Identities = 243/246 (98%), Positives = 244/246 (99%)
Query: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR
Sbjct: 1 MRASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGR 60
Query: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP
Sbjct: 61 APPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
Query: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV
Sbjct: 121 DVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAV 180
Query: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP
Sbjct: 181 GEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
Query: 241 SPLRSG 246
SP+ G
Sbjct: 241 SPVWPG 246
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 54.7 bits (130), Expect = 1e-07
Identities = 78/304 (25%), Positives = 104/304 (34%), Gaps = 43/304 (14%)
Query: 66 GPVGVGPLVPDLEEGVPGAR------GHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGI 119
G G GP P EG PGA G + G P+ G
Sbjct: 69 GAAGAGPAAP--AEGAPGAAPEPPPAGRARPGGGGPQRP-------------------GP 107
Query: 120 PDVAVEVVVASEQQPSAA-REGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGV 178
P +V A P+A R G A + + GP E A G + G
Sbjct: 108 PSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGP--EPAPAGPAKPAGPAA 165
Query: 179 AVGEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGP 238
GP G G G G+ G G + L + + H P +
Sbjct: 166 LAARAGPGPGPGPGPGPGPGPGKPAGPG-----AAQTLNGSAALLNSHHAAAPAVSLVNN 220
Query: 239 GPSPLRSGHQVPSPGSVLS--PHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRP 296
GP+ L + +PG+V+ P + PP+ A +P P P A PP PP P
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPA---APAPAAPAAAPPPPPPAP 277
Query: 297 QKARGSRSRRRYLWRWDSAAGVAGGARAALSSSAAEAAAAAAAAAAARMDFLSGPSPAAS 356
A +R +A V A AA + +A AA A A AA P P A+
Sbjct: 278 --ATLARPPGHPAGPPTAAPAVPPPA-AAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAA 334
Query: 357 AASP 360
AA+P
Sbjct: 335 AAAP 338
Score = 40.8 bits (94), Expect = 0.002
Identities = 60/229 (26%), Positives = 76/229 (33%), Gaps = 35/229 (15%)
Query: 171 VRAGGEGVAVGEELQDTGPRWGEGEGEEQGRE--PGSGNTTGTLGKELVSQVSTRRAVHP 228
VRA G A+G + P G G E PG+ G+ +R P
Sbjct: 50 VRAAAAG-ALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRP-GP 107
Query: 229 PTPKRARTGPGPSPLRSGHQVPSPGSVLS-------------PHMLFGHPPSAAGGGDSG 275
P+P+R GP+P + + P GS S P P AG
Sbjct: 108 PSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALA 167
Query: 276 GEGSPEPLLPPAQGP-PAPPRP------QKARGSRSRRRYLWRWDSAAGVAGGARAALSS 328
P P P GP P P +P Q GS + A + AAL
Sbjct: 168 ARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLP 227
Query: 329 SAAEAA-----------AAAAAAAAARMDFLSGPSPAASAASPERRDPA 366
AA AAA A A + P+PAA AA+P PA
Sbjct: 228 LPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPA 276
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 51.2 bits (121), Expect = 1e-06
Identities = 85/311 (27%), Positives = 102/311 (32%), Gaps = 52/311 (16%)
Query: 19 SGGPGRNQTWVGGQGPKAP--WPGEGGWDCASPAALACSVGMGRAPPGLGPVG-VGPLVP 75
SG PG N G GP P PGE G PA A + G P GP G VGP
Sbjct: 311 SGSPGEN----GSPGPMGPRGLPGERGR--TGPAGAAGARGNDGQPGPAGPPGPVGPAGG 364
Query: 76 DLEEGVPGARGHSHAI-VGDPEAAHAVVVASEDSSVTCTVALHGIPDV-AVEVVVASEQQ 133
G PGA+G + PE A G P + S
Sbjct: 365 PGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGA 424
Query: 134 PSAARE----GNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGP 189
P A G RG G +GP+ + G+ GE GE GP
Sbjct: 425 PGIAGAPGFPGPRGPPGPQGATGP-----LGPKGQTGEPGIAGFKGEQGPKGEP-GPAGP 478
Query: 190 RWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRA---RTGPGPSPLRSG 246
+ G E+G+ G G + PP + A R PG L
Sbjct: 479 QGAPGPAGEEGKRGARGEPGGV------------GPIGPPGERGAPGNRGFPGQDGLAGP 526
Query: 247 HQVPS---PGSVLSPHMLFGHP--------PSAAG----GGDSGGEGSPEPLLPPAQ-GP 290
P P + P G P P A G GD+G +G P P + G
Sbjct: 527 KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGR 586
Query: 291 PAPPRPQKARG 301
P PP PQ ARG
Sbjct: 587 PGPPGPQGARG 597
Score = 41.2 bits (95), Expect = 0.001
Identities = 72/275 (26%), Positives = 89/275 (32%), Gaps = 52/275 (18%)
Query: 60 RAPPG-LGPVGV-GPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALH 117
R PPG +GP G+ GP EG PGA G P D T V
Sbjct: 1016 RGPPGPVGPPGLTGPAGEPGREGSPGADG--------PPGRDGAAGVKGDRGETGAVGAP 1067
Query: 118 GIPDVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEG 177
G P A ++G+RG+A MG P ARG+ +G
Sbjct: 1068 GAPGPPGSPGPAGP----TGKQGDRGEAGAQGPMG--------PSGPAGARGI-----QG 1110
Query: 178 VAVGEELQDTGPRWGEGEGEEQGREPGSGNT--TGTLGKELVSQVSTRRAVHPPTPKRAR 235
GPR +GE E G G+ TG G S + P
Sbjct: 1111 --------PQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP 1162
Query: 236 TGP----GPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPP 291
GP GPS + +P P P G A G+ G G P GPP
Sbjct: 1163 RGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP--------GPP 1214
Query: 292 APPRPQKA---RGSRSRRRYLWRWDSAAGVAGGAR 323
P A G R + ++ A AGG R
Sbjct: 1215 GPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLR 1249
Score = 39.3 bits (90), Expect = 0.006
Identities = 79/313 (25%), Positives = 103/313 (32%), Gaps = 67/313 (21%)
Query: 20 GGPGRNQTWVGGQGPKAPWPGEGG--WDCASPAALACSVGMGRAPPGLGPVGVGPLVPDL 77
G PG + + G GP P PGEGG D P G AP +GP G
Sbjct: 657 GAPGPSG-FQGLPGPPGP-PGEGGKPGDQGVP-------GEAGAPGLVGPRG-------- 699
Query: 78 EEGVPGARGHSHA--------IVGDP--EAAHAVVVASEDSSVTCTVALHGIPDVAVEVV 127
E G PG RG A + G P + + L G+P
Sbjct: 700 ERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPG------ 753
Query: 128 VASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVR---------AGGEGV 178
++ +A G +GD D V E+ G ++ RG+ A GE
Sbjct: 754 ----ERGAAGIAGPKGDRGD-----VGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG 804
Query: 179 AVGEE--LQDTGPRWGEGEGEEQGRE--------PGSGNTTGTLGKELVSQVSTRRAVHP 228
VG G R GE E G PG+ G G++ + +
Sbjct: 805 EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQ--GEAGQKGDAGA 862
Query: 229 PTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQ 288
P P+ PGP P G P +A G G G+P P PP
Sbjct: 863 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP-- 920
Query: 289 GPPAPPRPQKARG 301
GP P+ ARG
Sbjct: 921 GPSGKDGPKGARG 933
Score = 38.9 bits (89), Expect = 0.007
Identities = 72/303 (23%), Positives = 94/303 (31%), Gaps = 40/303 (13%)
Query: 20 GGPGRN--QTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVG----VGPL 73
G PG++ + G GP P G P A S G AP G G G
Sbjct: 777 GAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFA 836
Query: 74 VPDLEEGVPGARGHS-------HAIVGDPEAAHAVVVASEDSSVTCTVALHGI--PDVAV 124
P +G PGA+G A P+ + VT G P A
Sbjct: 837 GPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 896
Query: 125 EVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEEL 184
A+ + GN G GP ++ +G G GE
Sbjct: 897 GFPGAAGRVGPPGSNGNPGPPGPP-----------GPSGKDGPKGARGDSGPPGRAGEP- 944
Query: 185 QDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTG----PGP 240
G + G E+G EPG +G G ++ +R + +R G PGP
Sbjct: 945 ---GLQGPAGPPGEKG-EPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGP 1000
Query: 241 SPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKAR 300
S P P G P G+ G EGS P A GPP +
Sbjct: 1001 SGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS-----PGADGPPGRDGAAGVK 1055
Query: 301 GSR 303
G R
Sbjct: 1056 GDR 1058
Score = 36.2 bits (82), Expect = 0.048
Identities = 49/196 (25%), Positives = 60/196 (30%), Gaps = 20/196 (10%)
Query: 120 PDVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVA 179
P ++ AS Q ++G GD D +V GP E+ RG GE A
Sbjct: 87 PICPTDLATASGQPGPKGQKGEPGDIKD-IVGPKGPPGPQGPAGEQGPRGDRGDKGEKGA 145
Query: 180 VGEELQD--------------TGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRA 225
G +D GP G G + G G +L
Sbjct: 146 PGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGP 205
Query: 226 VHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLP 285
+ P P PGP + P V P G P GD G G P
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGK-----P 260
Query: 286 PAQGPPAPPRPQKARG 301
G PP PQ ARG
Sbjct: 261 GKAGERGPPGPQGARG 276
Score = 35.4 bits (80), Expect = 0.082
Identities = 73/272 (26%), Positives = 88/272 (32%), Gaps = 68/272 (25%)
Query: 30 GGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEGVPGARGHSH 89
G QGPK PG G A A R PG GVGP+ P E G PG RG
Sbjct: 465 GEQGPKGE-PGPAGPQGAPGPAGEEGKRGARGEPG----GVGPIGPPGERGAPGNRGFP- 518
Query: 90 AIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPS--AAREGNRGDATD 147
G +A E+ PS A +G GD
Sbjct: 519 ----------------------------GQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 550
Query: 148 DVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQGREPGSGN 207
G+ ARG+ G+ G+ GP GE GR PG
Sbjct: 551 PGEPGL-----------PGARGLTGRPGDAGPQGK----VGPSGAPGE---DGR-PGPPG 591
Query: 208 TTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGH--P 265
G G+ V P PK A PG + + P + G P
Sbjct: 592 PQGARGQPGVMGF--------PGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGP 643
Query: 266 PSAAG-GGDSGGEGSPEPLLPPAQGPPAPPRP 296
P AG G+ G +G+P P QG P PP P
Sbjct: 644 PGPAGPAGERGEQGAPGP--SGFQGLPGPPGP 673
Score = 32.7 bits (73), Expect = 0.53
Identities = 73/308 (23%), Positives = 94/308 (30%), Gaps = 38/308 (12%)
Query: 13 SPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGP 72
+P GP + G QGP+ PG G PA + + G P G G
Sbjct: 370 APGAKGEAGPTGARGPEGAQGPRGE-PGTPG--SPGPAGASGNPGTDGIPGAKGSAGAPG 426
Query: 73 LVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQ 132
+ G PG RG P+ A + + G E A Q
Sbjct: 427 IAG--APGFPGPRGPP-----GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479
Query: 133 QPS--AAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQD---- 186
A EG RG + +G IGP E A G G+ G +
Sbjct: 480 GAPGPAGEEGKRGARGEPGGVGP-----IGPPGERGAPGNRGFPGQDGLAGPKGAPGERG 534
Query: 187 ----TGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSP 242
GP+ G+ G EPG G G+ + V P PGP
Sbjct: 535 PSGLAGPKGANGDPGRPG-EPGLPGARGLTGRP--GDAGPQGKVGPSGAPGEDGRPGPPG 591
Query: 243 LRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPP-------AQGPPAPPR 295
+ P P G P A G+ G G+P P A GPP P
Sbjct: 592 PQGARGQPGVMGFPGPKGANGEPGKA---GEKGLPGAPGLRGLPGKDGETGAAGPPGPAG 648
Query: 296 PQKARGSR 303
P RG +
Sbjct: 649 PAGERGEQ 656
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 51.2 bits (121), Expect = 1e-06
Identities = 85/311 (27%), Positives = 102/311 (32%), Gaps = 52/311 (16%)
Query: 19 SGGPGRNQTWVGGQGPKAP--WPGEGGWDCASPAALACSVGMGRAPPGLGPVG-VGPLVP 75
SG PG N G GP P PGE G PA A + G P GP G VGP
Sbjct: 242 SGSPGEN----GSPGPMGPRGLPGERGR--TGPAGAAGARGNDGQPGPAGPPGPVGPAGG 295
Query: 76 DLEEGVPGARGHSHAI-VGDPEAAHAVVVASEDSSVTCTVALHGIPDV-AVEVVVASEQQ 133
G PGA+G + PE A G P + S
Sbjct: 296 PGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGA 355
Query: 134 PSAARE----GNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGP 189
P A G RG G +GP+ + G+ GE GE GP
Sbjct: 356 PGIAGAPGFPGPRGPPGPQGATGP-----LGPKGQTGEPGIAGFKGEQGPKGEP-GPAGP 409
Query: 190 RWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRA---RTGPGPSPLRSG 246
+ G E+G+ G G + PP + A R PG L
Sbjct: 410 QGAPGPAGEEGKRGARGEPGGV------------GPIGPPGERGAPGNRGFPGQDGLAGP 457
Query: 247 HQVPS---PGSVLSPHMLFGHP--------PSAAG----GGDSGGEGSPEPLLPPAQ-GP 290
P P + P G P P A G GD+G +G P P + G
Sbjct: 458 KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGR 517
Query: 291 PAPPRPQKARG 301
P PP PQ ARG
Sbjct: 518 PGPPGPQGARG 528
Score = 41.2 bits (95), Expect = 0.001
Identities = 72/275 (26%), Positives = 89/275 (32%), Gaps = 52/275 (18%)
Query: 60 RAPPG-LGPVGV-GPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALH 117
R PPG +GP G+ GP EG PGA G P D T V
Sbjct: 947 RGPPGPVGPPGLTGPAGEPGREGSPGADG--------PPGRDGAAGVKGDRGETGAVGAP 998
Query: 118 GIPDVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEG 177
G P A ++G+RG+A MG P ARG+ +G
Sbjct: 999 GAPGPPGSPGPAGP----TGKQGDRGEAGAQGPMG--------PSGPAGARGI-----QG 1041
Query: 178 VAVGEELQDTGPRWGEGEGEEQGREPGSGNT--TGTLGKELVSQVSTRRAVHPPTPKRAR 235
GPR +GE E G G+ TG G S + P
Sbjct: 1042 --------PQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP 1093
Query: 236 TGP----GPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPP 291
GP GPS + +P P P G A G+ G G P GPP
Sbjct: 1094 RGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP--------GPP 1145
Query: 292 APPRPQKA---RGSRSRRRYLWRWDSAAGVAGGAR 323
P A G R + ++ A AGG R
Sbjct: 1146 GPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLR 1180
Score = 39.3 bits (90), Expect = 0.006
Identities = 79/313 (25%), Positives = 103/313 (32%), Gaps = 67/313 (21%)
Query: 20 GGPGRNQTWVGGQGPKAPWPGEGG--WDCASPAALACSVGMGRAPPGLGPVGVGPLVPDL 77
G PG + + G GP P PGEGG D P G AP +GP G
Sbjct: 588 GAPGPSG-FQGLPGPPGP-PGEGGKPGDQGVP-------GEAGAPGLVGPRG-------- 630
Query: 78 EEGVPGARGHSHA--------IVGDP--EAAHAVVVASEDSSVTCTVALHGIPDVAVEVV 127
E G PG RG A + G P + + L G+P
Sbjct: 631 ERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPG------ 684
Query: 128 VASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVR---------AGGEGV 178
++ +A G +GD D V E+ G ++ RG+ A GE
Sbjct: 685 ----ERGAAGIAGPKGDRGD-----VGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG 735
Query: 179 AVGEE--LQDTGPRWGEGEGEEQGRE--------PGSGNTTGTLGKELVSQVSTRRAVHP 228
VG G R GE E G PG+ G G++ + +
Sbjct: 736 EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQ--GEAGQKGDAGA 793
Query: 229 PTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQ 288
P P+ PGP P G P +A G G G+P P PP
Sbjct: 794 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP-- 851
Query: 289 GPPAPPRPQKARG 301
GP P+ ARG
Sbjct: 852 GPSGKDGPKGARG 864
Score = 38.9 bits (89), Expect = 0.007
Identities = 72/303 (23%), Positives = 94/303 (31%), Gaps = 40/303 (13%)
Query: 20 GGPGRN--QTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVG----VGPL 73
G PG++ + G GP P G P A S G AP G G G
Sbjct: 708 GAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFA 767
Query: 74 VPDLEEGVPGARGHS-------HAIVGDPEAAHAVVVASEDSSVTCTVALHGI--PDVAV 124
P +G PGA+G A P+ + VT G P A
Sbjct: 768 GPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 827
Query: 125 EVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEEL 184
A+ + GN G GP ++ +G G GE
Sbjct: 828 GFPGAAGRVGPPGSNGNPGPPGPP-----------GPSGKDGPKGARGDSGPPGRAGEP- 875
Query: 185 QDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTG----PGP 240
G + G E+G EPG +G G ++ +R + +R G PGP
Sbjct: 876 ---GLQGPAGPPGEKG-EPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGP 931
Query: 241 SPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKAR 300
S P P G P G+ G EGS P A GPP +
Sbjct: 932 SGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS-----PGADGPPGRDGAAGVK 986
Query: 301 GSR 303
G R
Sbjct: 987 GDR 989
Score = 35.4 bits (80), Expect = 0.082
Identities = 73/272 (26%), Positives = 88/272 (32%), Gaps = 68/272 (25%)
Query: 30 GGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEGVPGARGHSH 89
G QGPK PG G A A R PG GVGP+ P E G PG RG
Sbjct: 396 GEQGPKGE-PGPAGPQGAPGPAGEEGKRGARGEPG----GVGPIGPPGERGAPGNRGFP- 449
Query: 90 AIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPS--AAREGNRGDATD 147
G +A E+ PS A +G GD
Sbjct: 450 ----------------------------GQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 481
Query: 148 DVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQGREPGSGN 207
G+ ARG+ G+ G+ GP GE GR PG
Sbjct: 482 PGEPGL-----------PGARGLTGRPGDAGPQGK----VGPSGAPGE---DGR-PGPPG 522
Query: 208 TTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGH--P 265
G G+ V P PK A PG + + P + G P
Sbjct: 523 PQGARGQPGVMGF--------PGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGP 574
Query: 266 PSAAG-GGDSGGEGSPEPLLPPAQGPPAPPRP 296
P AG G+ G +G+P P QG P PP P
Sbjct: 575 PGPAGPAGERGEQGAPGP--SGFQGLPGPPGP 604
Score = 33.5 bits (75), Expect = 0.31
Identities = 40/156 (25%), Positives = 46/156 (29%), Gaps = 19/156 (12%)
Query: 160 GPQVEEAARGVVRAGGEGVAVGEELQD--------------TGPRWGEGEGEEQGREPGS 205
GP E+ RG GE A G +D GP G G +
Sbjct: 57 GPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAG 116
Query: 206 GNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHP 265
G G +L + P P PGP + P V P G P
Sbjct: 117 GFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPP 176
Query: 266 PSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARG 301
GD G G P G PP PQ ARG
Sbjct: 177 GPPGKPGDDGEAGK-----PGKAGERGPPGPQGARG 207
Score = 32.7 bits (73), Expect = 0.53
Identities = 73/308 (23%), Positives = 94/308 (30%), Gaps = 38/308 (12%)
Query: 13 SPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGP 72
+P GP + G QGP+ PG G PA + + G P G G
Sbjct: 301 APGAKGEAGPTGARGPEGAQGPRGE-PGTPG--SPGPAGASGNPGTDGIPGAKGSAGAPG 357
Query: 73 LVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQ 132
+ G PG RG P+ A + + G E A Q
Sbjct: 358 IAG--APGFPGPRGPP-----GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 410
Query: 133 QPS--AAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQD---- 186
A EG RG + +G IGP E A G G+ G +
Sbjct: 411 GAPGPAGEEGKRGARGEPGGVGP-----IGPPGERGAPGNRGFPGQDGLAGPKGAPGERG 465
Query: 187 ----TGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSP 242
GP+ G+ G EPG G G+ + V P PGP
Sbjct: 466 PSGLAGPKGANGDPGRPG-EPGLPGARGLTGRP--GDAGPQGKVGPSGAPGEDGRPGPPG 522
Query: 243 LRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPP-------AQGPPAPPR 295
+ P P G P A G+ G G+P P A GPP P
Sbjct: 523 PQGARGQPGVMGFPGPKGANGEPGKA---GEKGLPGAPGLRGLPGKDGETGAAGPPGPAG 579
Query: 296 PQKARGSR 303
P RG +
Sbjct: 580 PAGERGEQ 587
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 50.8 bits (120), Expect = 2e-06
Identities = 59/221 (26%), Positives = 80/221 (36%), Gaps = 16/221 (7%)
Query: 158 LIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELV 217
L GP ++ + R E V EE + G + E G+ P G + G
Sbjct: 332 LDGPPIKVSGAPDKRERAERPPVEEEAAEME---GAADAAEGGKVPSPGYGSPAAGAASA 388
Query: 218 SQVSTRRAVHPP------TPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLF----GHPPS 267
+ P TP+ +G P+ SG P S +P G P
Sbjct: 389 DTAARAAPAAPADPDSGATPEDPDSGTAPADPDSGAFAADPDSGAAPAAPADPDSGAAPD 448
Query: 268 AAGGGDSGGEGSPE-PLLPPAQGPPAPPRPQKARGSRSRRRYLWRWDSAAGVAGGARAAL 326
A DSG +P+ P P A P P A +R+ D+ A A A A
Sbjct: 449 APADPDSGA--APDAPADPDAGAAPEAPAAPAAAETRAAHVAPAAPDAGAPTAPAASATR 506
Query: 327 SSSAAEAAAAAAAAAAARMDFLSGPSPAASAASPERRDPAR 367
++ AA+AA A+ A R L PSP AA P P R
Sbjct: 507 AAQVRRAASAAPASGARRKIHLRPPSPEIQAADPPTPRPTR 547
Score = 39.7 bits (91), Expect = 0.004
Identities = 58/218 (26%), Positives = 81/218 (37%), Gaps = 17/218 (7%)
Query: 161 PQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEG-EEQGREPGSGNTTGTL-GKELVS 218
P E A +AG G ++T P +GEG + PG + G +
Sbjct: 198 PPEEPQALRPAKAGSRG-GYSPPPEETMPFELDGEGFGDDSPPPGLSRVIAQVDGSSQFA 256
Query: 219 QVSTRRAVH--PPTPKRARTGPGP--SPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDS 274
V+ AV P PG SP + + PS + SP M PP G +
Sbjct: 257 AVAASSAVRLTPAANAPPLWVPGAIGSPSQEAVRPPSNFTGSSPWMEISGPPFEIGSAPA 316
Query: 275 GGEGSPEPLLPPAQGPPAPPRPQKARGSRSRRRYLWR---WDSAAGVAGGARAALSSSAA 331
G + +P + P P P K G+ +R R + AA + G A AA
Sbjct: 317 GVDDTPVNMDSPPIALDGP--PIKVSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVP 374
Query: 332 EAAAAAAAAAAARMDFLSGPSPAA-----SAASPERRD 364
+ AA AA D + +PAA S A+PE D
Sbjct: 375 SPGYGSPAAGAASADTAARAAPAAPADPDSGATPEDPD 412
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 50.1 bits (118), Expect = 3e-06
Identities = 81/309 (26%), Positives = 105/309 (33%), Gaps = 76/309 (24%)
Query: 2 RASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRA 61
R + P P S GP + G QGP P +G L VG+
Sbjct: 646 RGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQG---------LRGEVGLPGV 696
Query: 62 PPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPD 121
GP+G P P ++G G RG + G+P + G+P
Sbjct: 697 KGDKGPMG--PPGPKGDQGEKGPRG----LTGEP-------------------GMRGLPG 731
Query: 122 VAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVG 181
E P A +G G A D H+ GP+ E+ G+ G G
Sbjct: 732 AVGE--------PGA--KGAMGPAGPDG----HQ----GPRGEQGLTGMPGIRGPPGPSG 773
Query: 182 EELQD--TGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVH-PPTPKRARTGP 238
+ + TGP+ +G GR PG G GK + S+ S+ V PP P A P
Sbjct: 774 DPGKPGLTGPQGPQGLPGTPGR-PGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPP 832
Query: 239 GPSPLRSGHQVPSPGSVLSPHMLFGH-----------PPSAAGGGDSGGEGSPEPLLPPA 287
GP P P L GH PP G G P P PP
Sbjct: 833 GP---------PGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPG 883
Query: 288 QGPPAPPRP 296
+G P PP P
Sbjct: 884 EGLPGPPGP 892
Score = 39.3 bits (90), Expect = 0.006
Identities = 89/314 (28%), Positives = 101/314 (32%), Gaps = 68/314 (21%)
Query: 20 GGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMG--RAPPGLG--PVGVGPLVP 75
G PG G GP P +G P GM R PPG P G P
Sbjct: 734 GEPGAK----GAMGPAGPDGHQG------PRGEQGLTGMPGIRGPPGPSGDPGKPGLTGP 783
Query: 76 DLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPS 135
+G+PG G I G+P A +V SE SS+ G P
Sbjct: 784 QGPQGLPGTPGRP-GIKGEP-GAPGKIVTSEGSSMLTVPGPPGPPGA----------MGP 831
Query: 136 AAREGNRGDATDDVVMGVHEEL-LIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEG 194
G G A + G E L L GP RG G GPR G
Sbjct: 832 PGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPG--------PPGPRGPPG 883
Query: 195 EGEEQGREPGSGNTTGTLGKELVSQVSTRRAVH-PPTPKRARTGPGPSPLRSGHQVPS-- 251
EG PG G+ + +S PP PK + PGP GHQ
Sbjct: 884 EGL-----PGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPR----GHQGEQGL 934
Query: 252 PGSVLSPHMLFG-------HPPSAAGG-GDSGGEGSPEPLLPPA-------------QGP 290
PG S FG PP G GD G G P L P+ GP
Sbjct: 935 PGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPSEGGSSSTMYVSGP 994
Query: 291 PAPPRPQKARGSRS 304
P PP P GS S
Sbjct: 995 PGPPGPPGPPGSIS 1008
Score = 30.4 bits (67), Expect = 2.6
Identities = 50/165 (30%), Positives = 61/165 (36%), Gaps = 37/165 (22%)
Query: 169 GVVRAGGE-GVAVGEELQ---DTGPRWGEGEGEEQGREPGSGNTTGTLG---------KE 215
G + AGG G A G+ D GP G G E G G+G G LG E
Sbjct: 1319 GSLGAGGAFGEAAGDRGPYGTDIGPGGGYGAAAEGGMYAGNG---GLLGADFAGDLDYNE 1375
Query: 216 LVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPG---------SVLSPHMLF---- 262
L +VS A T GP P + G Q P PG +V + M F
Sbjct: 1376 LAVRVSESMQRQGLLQGMAYTVQGP-PGQPGPQGP-PGISKVFSAYSNVTADLMDFFQTY 1433
Query: 263 ----GHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSR 303
G P G G +G P PP G P PP P+ +G +
Sbjct: 1434 GAIQGPPGQKGEMGTPGPKGDRGPAGPP--GHPGPPGPRGHKGEK 1476
Score = 29.3 bits (64), Expect = 5.9
Identities = 35/128 (27%), Positives = 41/128 (32%), Gaps = 20/128 (15%)
Query: 186 DTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRS 245
D GP G EQG S + + + G L P K PG + S
Sbjct: 919 DQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPS 978
Query: 246 GHQVPSPGSVLSPHMLFGHP-----PSAAGGGDSGGE------------GSPEPLLPPAQ 288
G PS G S + G P P G S G+ S L Q
Sbjct: 979 G---PSEGGSSSTMYVSGPPGPPGPPGPPGSISSSGQEIQQYISEYMQSDSIRSYLSGVQ 1035
Query: 289 GPPAPPRP 296
GPP PP P
Sbjct: 1036 GPPGPPGP 1043
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 48.5 bits (114), Expect = 9e-06
Identities = 75/290 (25%), Positives = 99/290 (34%), Gaps = 70/290 (24%)
Query: 30 GGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEGVPGARGHS- 88
G +GP P G PA A +G+ P GP G P E+G PG +G
Sbjct: 1075 GNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPG-----PAGEKGAPGEKGPQG 1129
Query: 89 -------HAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREGN 141
VG P A V ED + ++G+
Sbjct: 1130 PAGRDGLQGPVGLPGPAGPVGPPGEDGD--------------------KGEIGEPGQKGS 1169
Query: 142 RGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEE-----LQDTGPRWGEGEG 196
+GD + G GPQ G A GE G++ D GPR G
Sbjct: 1170 KGDKGEQGPPGP-----TGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPP 1224
Query: 197 EEQGRE-----PGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPS 251
G + PG TG +G+ + PP P R GP +P G Q P
Sbjct: 1225 GPVGLQGLPGPPGEKGETGDVGQ-----------MGPPGPPGPR-GPSGAPGADGPQGP- 1271
Query: 252 PGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARG 301
PG + G+P + G+ G G EP LP GPP P + +G
Sbjct: 1272 PGGI-------GNPGAVGEKGEPGEAG--EPGLPGEGGPPGPKGERGEKG 1312
Score = 43.1 bits (100), Expect = 4e-04
Identities = 76/293 (25%), Positives = 95/293 (32%), Gaps = 42/293 (14%)
Query: 30 GGQGPKAPWPGEGG--WDCASPAALACSVGMG-RAPPG-LGPVG-VGPLVPDLEEGVPGA 84
G GP P PGE G + P G + PPG GP G +G P +G PG
Sbjct: 1144 GPAGPVGP-PGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGP 1202
Query: 85 RGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREGNRGD 144
RG + V L G+P G +G+
Sbjct: 1203 RGQQGLFGQKGDEGPRGFPGPPGP-----VGLQGLP----------------GPPGEKGE 1241
Query: 145 ATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQGREPG 204
D MG GP+ A G G +G G + GE E G PG
Sbjct: 1242 TGDVGQMGPPGPP--GPRGPSGAPGADGPQGPPGGIGNP-GAVGEKGEPGEAGEPGL-PG 1297
Query: 205 SGNTTGTLGKE-LVSQVSTRRAVHPPTPKRARTGPGP--SPLRSGHQV-PSPGSVLSPHM 260
G G G+ + A PP PK GP SP G P P P
Sbjct: 1298 EGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAG 1357
Query: 261 LFGHPPSAAGGGDSGGEGSPEPLLPPA-------QGPPAPPRPQKARGSRSRR 306
G P G+ G GSP P P +GPP P P+ +G + +
Sbjct: 1358 QDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAK 1410
Score = 40.8 bits (94), Expect = 0.002
Identities = 77/294 (26%), Positives = 94/294 (31%), Gaps = 47/294 (15%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDC--ASPAALACSVGMGRAPPGLGPVGVGPLVPDLE 78
GP Q G GPK P PG G D P + G+ P P VGP P E
Sbjct: 949 GPNGPQGPTGFPGPKGP-PGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGE 1007
Query: 79 EGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSA-- 136
G G RGH G P G+P +A + + P+
Sbjct: 1008 TGPMGERGHP----GPPGPPGE----------------QGLPGLAGKEGTKGDPGPAGLP 1047
Query: 137 ---AREGNRGDATDDVVMGVHEEL-LIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWG 192
G RG D + G L L G + G + GE G GP
Sbjct: 1048 GKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGA----AGPIGI 1103
Query: 193 EGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSP 252
G QG PG G G++ + R + P GP P G +
Sbjct: 1104 PGRPGPQG-PPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDK---- 1158
Query: 253 GSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSRSRR 306
G + G P GD G +G P P P QGP P P A G R
Sbjct: 1159 GEI-------GEPGQKGSKGDKGEQGPPGPTGP--QGPIGQPGPSGADGEPGPR 1203
Score = 38.9 bits (89), Expect = 0.007
Identities = 78/307 (25%), Positives = 106/307 (34%), Gaps = 63/307 (20%)
Query: 6 SSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGL 65
S + I + L GP G GP P PG GG + P +
Sbjct: 544 SQAQAILQQARLALRGPAGPMGLTGRPGPVGP-PGSGG--------------LKGEPGDV 588
Query: 66 GPVGV-GPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAV 124
GP G G P G PG RG + + + A + + L G+P
Sbjct: 589 GPQGPRGVQGPPGPAGKPGRRGRAGS-----DGARGMPGQTGPKGDRGFDGLAGLPG--- 640
Query: 125 EVVVASEQQPSA-----AREGNRGDATDDVVMGVHEEL----LIGPQVEEAARGVVRAGG 175
E + PS +G RGD + G+ E L+GP+ G G
Sbjct: 641 EKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTG 700
Query: 176 EGVAVGEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRAR 235
G + + GP+ G +QG PG+ G G A+ PP K
Sbjct: 701 MDGQPGPK-GNVGPQGEPGPPGQQGN-PGAQGLPGPQG-----------AIGPPGEK--- 744
Query: 236 TGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPR 295
GP P G PG+ P GHP G+ GG+G P P QGP P
Sbjct: 745 -GPLGKPGLPG----MPGADGPP----GHPGKEGPPGEKGGQGPPGP-----QGPIGYPG 790
Query: 296 PQKARGS 302
P+ +G+
Sbjct: 791 PRGVKGA 797
Score = 33.1 bits (74), Expect = 0.41
Identities = 73/287 (25%), Positives = 100/287 (34%), Gaps = 63/287 (21%)
Query: 33 GPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEGVPGARGHSHAIV 92
GPK P PG G P + GM P G VG P E G PG +G+ A
Sbjct: 685 GPKGP-PGPPG-----PPGVT---GMDGQPGPKGNVG-----PQGEPGPPGQQGNPGA-Q 729
Query: 93 GDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREGN----------- 141
G P A+ E + L G+P ++ P + G
Sbjct: 730 GLPGPQGAIGPPGEKGPLG-KPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGY 788
Query: 142 ---RGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGE--ELQDTGPRWGEGEG 196
RG D + G L G + E+ G G+ G+ E+ GPR +G
Sbjct: 789 PGPRGVKGADGIRG-----LKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPE 843
Query: 197 EEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVL 256
+GR +G+ G LG P ++ + G P G Q P GS+
Sbjct: 844 GPKGRGGPNGDP-GPLG---------------PPGEKGKLGVPGLPGYPGRQGPK-GSI- 885
Query: 257 SPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSR 303
G P G+ GG G+P P +G P P+ RG R
Sbjct: 886 ------GFPGFPGANGEKGGRGTPGK--PGPRGQRGPTGPRGERGPR 924
Score = 32.0 bits (71), Expect = 0.91
Identities = 49/184 (26%), Positives = 64/184 (34%), Gaps = 47/184 (25%)
Query: 160 GPQVEEAARGVV-RAGGEGVAVGEELQDTGPRWGEGEGEEQGRE--PGSGNTTGTLGKEL 216
GP+ E RG+ + G +G + G+ GP G QG PG G GK+
Sbjct: 916 GPRGERGPRGITGKPGPKGNSGGDG--PAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDG 973
Query: 217 VSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHP----------- 265
+ +R T + +TGP P G Q P+ + P GHP
Sbjct: 974 LPGHPGQRG---ETGFQGKTGPPGPPGVVGPQGPTGET--GPMGERGHPGPPGPPGEQGL 1028
Query: 266 PSAAGG----GDSGGEGSPEPLLPPA----------------------QGPPAPPRPQKA 299
P AG GD G G P PP +GPP PP P +
Sbjct: 1029 PGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGS 1088
Query: 300 RGSR 303
G R
Sbjct: 1089 PGER 1092
Score = 32.0 bits (71), Expect = 0.91
Identities = 78/303 (25%), Positives = 98/303 (32%), Gaps = 49/303 (16%)
Query: 30 GGQGPKAPWPGEGGWDCASPAALACSVGMGRA-PPGLGPVGVGPLVPDLEEGVPGARGHS 88
G GP+ P G G +P A+ G A PGL G GP P E G G G S
Sbjct: 1264 GADGPQGPPGGIG-----NPGAVGEKGEPGEAGEPGLPGEG-GPPGPKGERGEKGESGPS 1317
Query: 89 HAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREGNRGDATDD 148
A P V G P E A + P G++GD +
Sbjct: 1318 GA--AGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPP----GDKGDDGEP 1371
Query: 149 VVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQGREPGSGNT 208
G GP E G G G E + G + +GE +G PG
Sbjct: 1372 GQTGSP-----GPTGEPGPSGPPGKRGPPGPAGPEGRQ-GEKGAKGEAGLEG-PPGKTGP 1424
Query: 209 TGTLGKELVSQVSTRRAVHPPTPKRARTG-PGPS--PLRSGHQ-VPSPGSVLSPHMLFGH 264
G G R + P ++ G PGP P G +P P GH
Sbjct: 1425 IGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGH 1484
Query: 265 P----------------------PSAAGG--GDSGGEGSPEPLLPPAQ-GPPAPPRPQKA 299
P P + G G+ G G P+ PP G P PP P+ A
Sbjct: 1485 PGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGA 1544
Query: 300 RGS 302
+GS
Sbjct: 1545 KGS 1547
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 47.8 bits (112), Expect = 2e-05
Identities = 97/359 (27%), Positives = 121/359 (33%), Gaps = 62/359 (17%)
Query: 20 GGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEE 79
G PG + +G +GP P PG+ G D A G R PPG P G L
Sbjct: 209 GEPGASGP-MGPRGPPGP-PGKNGDD--GEAGKPGRPGE-RGPPG--PQGARGLPGTA-- 259
Query: 80 GVPGARGHS-----HAIVGD--PEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQ 132
G+PG +GH GD P + ++ + G+P E
Sbjct: 260 GLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPG---ERGRPGAP 316
Query: 133 QPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWG 192
P+ AR GN G G GP G V A GE GPR
Sbjct: 317 GPAGAR-GNDGATGAAGPPGP-----TGPAGPPGFPGAVGAKGEA-------GPQGPRGS 363
Query: 193 EGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPG--PSPLRSGHQVP 250
EG +G EPG G G A P K A PG +P G + P
Sbjct: 364 EGPQGVRG-EPGPPGPAGAAGP-----AGNPGADGQPGAKGANGAPGIAGAPGFPGARGP 417
Query: 251 S----PGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSRSRR 306
S PG P G P + GD+G +G P P+ QGPP P + RG+R
Sbjct: 418 SGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPV--GVQGPPGPAGEEGKRGARGE- 474
Query: 307 RYLWRWDSAAGVAG-----GARAALSSSAAEAAAAAAAAAAARMDFLSGPSPAASAASP 360
G+ G G + A+ A A R P PA SP
Sbjct: 475 ------PGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER----GSPGPAGPKGSP 523
Score = 46.2 bits (108), Expect = 5e-05
Identities = 104/377 (27%), Positives = 125/377 (33%), Gaps = 55/377 (14%)
Query: 13 SPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGV-G 71
+P + + GP G QGP P PG G + P A S G A GPVGV G
Sbjct: 408 APGFPGARGPS------GPQGPGGP-PGPKG-NSGEPGAPG-SKGDTGAKGEPGPVGVQG 458
Query: 72 PLVPDLEEGVPGARGHSH--AIVGDP-----EAAHAVVVASEDSSVTCTVALHGIPDVAV 124
P P EEG GARG + G P + A + G P A
Sbjct: 459 PPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAG 518
Query: 125 EVVVASEQ-QPSAAR-------EGNRGDATDDVVMG----VHEELLIGPQVEEAARGVVR 172
E +P A G+ G D G ++ GP ARG +
Sbjct: 519 PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARG--Q 576
Query: 173 AGGEGVAVGEELQDTGPRWGEGEGEEQGRE--PGSGNTTGTLGKELVSQVSTRRAVHPPT 230
AG G GP+ GE + G PG G GK+ + P
Sbjct: 577 AGVMGFP--------GPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPA 628
Query: 231 PKRARTGPGPSPLRSGHQVPS--PGSVLSPHMLFGHPPSAAGGGDSGGEGSPE-PLLPPA 287
+R GP SP G P+ PG P G P G SG G P
Sbjct: 629 GERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ-GVPGDLGAPGPSGARGERGFPGERGV 687
Query: 288 QGPPAPPRPQKARGSRSRRRYLWRWDSAAGVAGGARAALSSSAAEAAAAAAAAAAARMDF 347
QGPP P P+ A G+ D A G AG A S A AA
Sbjct: 688 QGPPGPAGPRGANGAPGN-------DGAKGDAGAPGAPGSQGAPGLQGMPGERGAAG--- 737
Query: 348 LSGPSPAASAASPERRD 364
L GP A P+ D
Sbjct: 738 LPGPKGDRGDAGPKGAD 754
Score = 45.4 bits (106), Expect = 8e-05
Identities = 88/359 (24%), Positives = 107/359 (29%), Gaps = 78/359 (21%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEG 80
GP G QGP P A PA G +P G G P P E G
Sbjct: 608 GPAGKDGEAGAQGPPGP---------AGPAGERGEQGPAGSPGFQGLPG--PAGPPGEAG 656
Query: 81 VPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREG 140
PG +G + GD A E G P E V P+ R
Sbjct: 657 KPGEQG----VPGDLGAPGPSGARGE----------RGFPG---ERGVQGPPGPAGPRGA 699
Query: 141 NRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVG-----EELQDTGPRWGEGE 195
N D G + A G+ GE A G + D GP+ +G
Sbjct: 700 NGAPGNDGAKGDAGAP---GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGS 756
Query: 196 GEEQGRE--------PGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGH 247
+ G PG G G+ S P P AR PG R
Sbjct: 757 PGKDGVRGLTGPIGPPGPAGAPGDKGESGPSG--------PAGPTGARGAPGD---RGEP 805
Query: 248 QVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSRSRRR 307
P P P G P + GD+G +G P P GP PP P G
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP--PGPAGPAGPPGPIGNVG------ 857
Query: 308 YLWRWDSAAGVAGGARAALSSSAAEAAAAAAAAAAARMDFLSGPSPAASAASPERRDPA 366
A GA+ A S+ A AA + P P+ +A P PA
Sbjct: 858 -----------APGAKGARGSAGPPGATGFPGAAGR----VGPPGPSGNAGPPGPPGPA 901
Score = 43.9 bits (102), Expect = 2e-04
Identities = 84/287 (29%), Positives = 95/287 (33%), Gaps = 71/287 (24%)
Query: 31 GQGPKAPWPGEGGWDCASPAALACSVGMG-RAPPG-LGPVGV-GPLVPDLEEGVPGARGH 87
GQ + +PG G P S G R PPG +GP G+ GP EG PGA G
Sbjct: 965 GQRGERGFPGLPG-PSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEG- 1022
Query: 88 SHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREGNRGDATD 147
S G P A D T G P A A + G+RG+
Sbjct: 1023 SPGRDGSPGA-------KGDRGETGPAGPPGAPGAPG----APGPVGPAGKSGDRGET-- 1069
Query: 148 DVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQGREPGSGN 207
GP G V A G GPR +GE EQG + G
Sbjct: 1070 ------------GPAGPAGPVGPVGARGPA-------GPQGPRGDKGETGEQG-DRGIKG 1109
Query: 208 TTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPS 267
G G + PP GP SP G Q PS S P G P S
Sbjct: 1110 HRGFSGLQ-----------GPP-------GPPGSP---GEQGPSGAS--GPAGPRGPPGS 1146
Query: 268 AAGGGDSGGEGSPEPLLPPAQ----------GPPAPPRPQKARGSRS 304
A G G G P P+ PP GPP PP P G S
Sbjct: 1147 AGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPS 1193
Score = 40.8 bits (94), Expect = 0.002
Identities = 84/314 (26%), Positives = 104/314 (33%), Gaps = 69/314 (21%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGV---------- 70
GP ++ G +G P PG G A PA + G A G G+
Sbjct: 359 GPRGSEGPQGVRGEPGP-PGPAG--AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGAR 415
Query: 71 GPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVAS 130
GP P G PG +G+S G+P A + V + G P A E
Sbjct: 416 GPSGPQGPGGPPGPKGNS----GEPGAPGSKGDTGAKGEPG-PVGVQGPPGPAGE----- 465
Query: 131 EQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVR-AGGEGVAVGE----ELQ 185
EG RG + G L GP E G G +GVA + E
Sbjct: 466 --------EGKRGARGEPGPTG-----LPGPPGERGGPGSRGFPGADGVAGPKGPAGERG 512
Query: 186 DTGPRWGEGEGEEQGRE-----PGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGP 240
GP +G E GR PG+ TG+ G P K GP
Sbjct: 513 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSP------------GPDGKTGPPGPAG 560
Query: 241 SPLRSGHQVPSPGSVLSPHMLFGHPPSAAG----GGDSGGEGSPEPLLPP-------AQG 289
R G P + M F P AAG G+ G G P + P AQG
Sbjct: 561 QDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQG 620
Query: 290 PPAPPRPQKARGSR 303
PP P P RG +
Sbjct: 621 PPGPAGPAGERGEQ 634
Score = 39.7 bits (91), Expect = 0.004
Identities = 84/314 (26%), Positives = 99/314 (31%), Gaps = 69/314 (21%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVG-VGPLVPDLEE 79
GP + G +G P PG G+ A P G P G G GP P
Sbjct: 791 GPTGARGAPGDRGEPGP-PGPAGF--AGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPA 847
Query: 80 GVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAARE 139
G PG G+ VG P A A A + G P A V PS
Sbjct: 848 GPPGPIGN----VGAPGAKGARGSAGPPGAT-------GFPGAAGRV---GPPGPS---- 889
Query: 140 GNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQ 199
GN G GP +E +G G GE GP G E+
Sbjct: 890 GNAGPPGPP-----------GPAGKEGGKGPRGETGPAGRPGE----VGPPGPPGPAGEK 934
Query: 200 GREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTG----PGPSPLRSGHQVPS---- 251
G PG+ G G ++ +R V +R G PGPS G Q PS
Sbjct: 935 G-SPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSG-EPGKQGPSGASG 992
Query: 252 ---PGSVLSPHMLFGHPPSAAGGGDSGGEGSP-------------------EPLLPPAQG 289
P + P L G P + G G EGSP P P A G
Sbjct: 993 ERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPG 1052
Query: 290 PPAPPRPQKARGSR 303
P P P G R
Sbjct: 1053 APGPVGPAGKSGDR 1066
Score = 38.1 bits (87), Expect = 0.013
Identities = 84/302 (27%), Positives = 104/302 (34%), Gaps = 42/302 (13%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGG--WDCASPAALACSVGMG-RAPPGL-GPVGV-GPLVP 75
GP + + G GP P PGE G + P L G R G G GV GP P
Sbjct: 635 GPAGSPGFQGLPGPAGP-PGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGP 693
Query: 76 DLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDV--AVEVVVASEQQ 133
G GA G+ A GD A A S+ + L G+P A + +
Sbjct: 694 AGPRGANGAPGNDGA-KGDAGAPGAP--GSQGAP-----GLQGMPGERGAAGLPGPKGDR 745
Query: 134 PSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGE 193
A +G G D V G+ IGP A G G G TG R
Sbjct: 746 GDAGPKGADGSPGKDGVRGLTGP--IGPPGPAGAPGDKGESGPSGPAGP----TGARGAP 799
Query: 194 GEGEEQGRE--------PGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRS 245
G+ E G PG+ G G+ + PP P PGP
Sbjct: 800 GDRGEPGPPGPAGFAGPPGADGQPGAKGEP--GDAGAKGDAGPPGPAGPAGPPGPIG--- 854
Query: 246 GHQVPSPGSVLSPHMLFGHPPSAAG-GGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSRS 304
V +PG+ + PP A G G +G G P P GPP PP P G +
Sbjct: 855 --NVGAPGAKGARGS--AGPPGATGFPGAAGRVGPPGP--SGNAGPPGPPGPAGKEGGKG 908
Query: 305 RR 306
R
Sbjct: 909 PR 910
Score = 32.7 bits (73), Expect = 0.53
Identities = 38/142 (26%), Positives = 44/142 (30%), Gaps = 29/142 (20%)
Query: 186 DTGPRWGEGEGEEQGRE--PGSGNTTGT-----------LGKELVSQVSTRRAVHPPTPK 232
DTGPR G GR+ PG G LG Q+S +
Sbjct: 116 DTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYG---YDEKST 172
Query: 233 RARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQ---- 288
+ PGP +P P P G P G SG G P PP +
Sbjct: 173 GGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDD 232
Query: 289 ---------GPPAPPRPQKARG 301
G PP PQ ARG
Sbjct: 233 GEAGKPGRPGERGPPGPQGARG 254
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 47.8 bits (112), Expect = 2e-05
Identities = 87/294 (29%), Positives = 103/294 (35%), Gaps = 50/294 (17%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGW---DCASPAALACSVGMGRAP--PGL-GPVGVGPLV 74
GP Q G QG P PG+ G + L + G G AP PGL GP G+G
Sbjct: 182 GPPGFQGEPGPQGEPGP-PGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPG 240
Query: 75 PDLEEGVPGARGHSHAI-VGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQ 133
D G PG +G S V P V V G+P A + Q
Sbjct: 241 LDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGV----GVPGAAG---LPGPQG 293
Query: 134 PSAAR--EGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRW 191
PS A+ G RG G L GP+ + GV G+ GE+ + G +
Sbjct: 294 PSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED-GEPGEQG 352
Query: 192 GEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPS 251
+G G G PGS G G PP PK GPG P VP
Sbjct: 353 PQGLGGPPGL-PGSAGLPGRRG--------------PPGPK-GEAGPGGPP-----GVPG 391
Query: 252 PGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSRSR 305
P L G P G G G LP A GPP P P+ G R
Sbjct: 392 IRGDQGPSGLAGKP------GVPGERG-----LPGAHGPPGPTGPKGEPGFTGR 434
Score = 44.3 bits (103), Expect = 2e-04
Identities = 91/345 (26%), Positives = 112/345 (32%), Gaps = 42/345 (12%)
Query: 30 GGQGPKAPWPGEGGWDCASPAALACSVGMG--------RAPPGL-GPVGVGPLVPDLEEG 80
G GPK P PG G A L G R PPGL GP G G G
Sbjct: 267 GAVGPKGP-PGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGM------PG 319
Query: 81 VPGARGHSHAIVGDPEAAHAVVVASEDSSV--TCTVALHGIPDVAVEVVVASEQQPSAAR 138
+PG +G G P ED L G P + + + P +
Sbjct: 320 LPGPKG-DRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPK 378
Query: 139 EGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEE 198
G G V G+ + GP GV G A G GP +GE
Sbjct: 379 -GEAGPGGPPGVPGIRGDQ--GPSGLAGKPGVPGERGLPGAHGPP----GPTGPKGEPGF 431
Query: 199 QGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGP----GPSPLRSGHQVPS--- 251
GR PG G LG++ + + + P+ GP GP L P
Sbjct: 432 TGR-PGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPG 490
Query: 252 -PGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSRSRRRYLW 310
PG + G P +A G G GSP PP GPP PP P A G+
Sbjct: 491 PPGEGRA-----GEPGTAGPTGPPGVPGSPGITGPP--GPPGPPGPPGAPGAFDETGIAG 543
Query: 311 RWDSAAGVAGGARAALSSSAAEAAAAAAAAAAARMDFLSGPSPAA 355
GV G +A A A L+ P PA+
Sbjct: 544 LHLPNGGVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPAS 588
Score = 33.9 bits (76), Expect = 0.24
Identities = 39/137 (28%), Positives = 46/137 (33%), Gaps = 32/137 (23%)
Query: 188 GPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGH 247
GP +GE QG EPG G G V Q P P G P P
Sbjct: 182 GPPGFQGEPGPQG-EPGPPGDRGLKGDNGVGQ--------PGLPGAPGQGGAPGP----P 228
Query: 248 QVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPL------------------LPPAQG 289
+P P + P L G P + G+SG G P P +P A G
Sbjct: 229 GLPGPAGLGKPG-LDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAG 287
Query: 290 PPAPPRPQKARGSRSRR 306
P P P A+G R
Sbjct: 288 LPGPQGPSGAKGEPGTR 304
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 47.4 bits (111), Expect = 2e-05
Identities = 52/171 (30%), Positives = 64/171 (37%), Gaps = 22/171 (12%)
Query: 193 EGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRART-GPGPSPLRSGHQVPS 251
EGE + + P S L V + PT K+ GPG ++ H P
Sbjct: 1215 EGEARKPAKPPVSPKPV------LTQPVPKLQGSPTPTSKKVPLPGPGSPEVKRAHGTPP 1268
Query: 252 PGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPA----PPRPQKARGSRSRRR 307
P S P P A G G P P PA+ PPA PP + G+
Sbjct: 1269 PVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGA----- 1323
Query: 308 YLWRWDSAAGVAGGARAA-LSSSAAEAAAAAAAAAAARMDFLSGPSPAASA 357
A + GA A + + AAAAAAAAAAA G SP SA
Sbjct: 1324 -----SPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSA 1369
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 47.0 bits (110), Expect = 3e-05
Identities = 87/316 (27%), Positives = 106/316 (33%), Gaps = 66/316 (20%)
Query: 12 PSPSYLHSGGPGRN-----QTWVGGQGPKAPWPG----EGGWDCASPAALACSVGM--GR 60
P+ S +G PG+ Q G QGP P PG GG PA + + G+ R
Sbjct: 355 PAGSPGSNGAPGQRGEPGPQGHAGAQGPPGP-PGINGSPGGKGEMGPAGIPGAPGLMGAR 413
Query: 61 APPGLGPV--------GVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTC 112
PPG G G + +G PG RG G P A +D S
Sbjct: 414 GPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE-RGEAGIPGVPGAKGEDGKDGSPGE 472
Query: 113 TVALHGIPDVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVR 172
A +G+P A E G RG A + + G GP E A G
Sbjct: 473 PGA-NGLPGAAGE----------RGAPGFRGPAGPNGIPGEK-----GPAGERGAPGPAG 516
Query: 173 AGGEGVAVGEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPK 232
G G + GP G G PGS G G SQ + R PP P
Sbjct: 517 PRGAAGEPGRDGVPGGPGMRGMPGSPGG--PGSDGKPGPPG----SQGESGRP-GPPGPS 569
Query: 233 RARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPA----- 287
R PG P P G+ + G+ GG G P P PP
Sbjct: 570 GPRGQPGVMGF------PGPK---------GNDGAPGKNGERGGPGGPGPQGPPGKNGET 614
Query: 288 --QGPPAPPRPQKARG 301
QGPP P P +G
Sbjct: 615 GPQGPPGPTGPGGDKG 630
Score = 43.5 bits (101), Expect = 3e-04
Identities = 84/319 (26%), Positives = 105/319 (32%), Gaps = 74/319 (23%)
Query: 18 HSGGPGRN--QTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVG----VG 71
+ G PG+N + GG GP+ P PG+ G G P GP G G
Sbjct: 586 NDGAPGKNGERGGPGGPGPQGP-PGKNG-----------ETGPQGPPGPTGPGGDKGDTG 633
Query: 72 PLVPDLEEGVPGARGH--SHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVA 129
P P +G+PG G + G+P G P +
Sbjct: 634 PPGPQGLQGLPGTGGPPGENGKPGEPGPKG-------------DAGAPGAPGGKGDAGAP 680
Query: 130 SEQQPS--AAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEE-LQD 186
E+ P A G RG A GP E +G G A G LQ
Sbjct: 681 GERGPPGLAGAPGLRGGA--------------GPPGPEGGKGAAGPPGPPGAAGTPGLQG 726
Query: 187 T-GPRWGEGEGEEQGR--EPGSGNTTGTLGKELVSQVSTRRAVHPPTP--KRARTGPGPS 241
G R G G +G EPG G GK+ + PP P + G G +
Sbjct: 727 MPGERGGLGSPGPKGDKGEPGGPGADGVPGKD--GPRGPTGPIGPPGPAGQPGDKGEGGA 784
Query: 242 PLRSGHQVP--SPGS--VLSPHMLFGHPPSAAGGGDSGG-----------EGSPEPLLPP 286
P G P SPG P G P + G+ GG EG P + P
Sbjct: 785 PGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGP 844
Query: 287 --AQGPPAPPRPQKARGSR 303
GP PP PQ +G R
Sbjct: 845 PGGSGPAGPPGPQGVKGER 863
Score = 42.4 bits (98), Expect = 7e-04
Identities = 76/282 (26%), Positives = 92/282 (32%), Gaps = 48/282 (17%)
Query: 30 GGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEGVPGARGHSH 89
G GP P PG G+ SP A VG +P G G + G PG +GH+
Sbjct: 330 GQPGPPGP-PGTAGFP-GSPGAKG-EVGPAGSPGSNGAPG--------QRGEPGPQGHAG 378
Query: 90 A--------IVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAR--E 139
A I G P + A GIP + P+ A
Sbjct: 379 AQGPPGPPGINGSPGGKGEMGPA-------------GIPGAPGLMGARGPPGPAGANGAP 425
Query: 140 GNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQ 199
G RG A + G E GP+ E G+ G A GE+ +D P GE
Sbjct: 426 GLRGGAGEPGKNGAKGEP--GPRGERGEAGIPGVPG---AKGEDGKDGSP----GEPGAN 476
Query: 200 GREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPH 259
G PG+ G G P R PGP+ R P V
Sbjct: 477 GL-PGAAGERGAPGFR--GPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGP 533
Query: 260 MLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARG 301
+ G P S G G G G P G P PP P RG
Sbjct: 534 GMRGMPGSPGGPGSDGKPGPPGS--QGESGRPGPPGPSGPRG 573
Score = 42.0 bits (97), Expect = 9e-04
Identities = 81/322 (25%), Positives = 105/322 (32%), Gaps = 69/322 (21%)
Query: 20 GGPGRNQTWVGGQGPKAPW--PGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDL 77
G PG N G GP P PG+ G P A + G +P GP G
Sbjct: 882 GPPGSN----GNPGPPGPSGSPGKDG-----PPGPAGNTGAPGSPGVSGPKG-------- 924
Query: 78 EEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAA 137
+ G PG +G S G P A + +A +T L G P + + S
Sbjct: 925 DAGQPGEKG-SPGAQGPPGAPGPLGIAG----ITGARGLAGPPGMP-------GPRGSPG 972
Query: 138 REGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQD-----TGPRWG 192
+G +G++ G+ E GP + G+ GE G D G G
Sbjct: 973 PQGVKGESGKPGANGLSGER--GPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGG 1030
Query: 193 EGEGEEQGR--------EPGSGNTTGTLGKELV-SQVSTRRAVHPPTPKRARTGPGPSPL 243
+G+ E G PG G GK + P P +R PGP
Sbjct: 1031 KGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP 1090
Query: 244 RS--GHQVPSPGSVLSPHMLFGHPPSAAGG----GDSGGEGSPEPLLPPA---------- 287
R G + + H F P A G G G GSP P P
Sbjct: 1091 RGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGK 1150
Query: 288 ------QGPPAPPRPQKARGSR 303
GP PP P+ RG R
Sbjct: 1151 DGTSGHPGPIGPPGPRGNRGER 1172
Score = 39.7 bits (91), Expect = 0.004
Identities = 93/321 (28%), Positives = 108/321 (33%), Gaps = 59/321 (18%)
Query: 20 GGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGV-----GPLV 74
G PG+N GG+G + PGE G + P G G A P GP GV P
Sbjct: 813 GAPGQNGE-PGGKGERGA-PGEKG-EGGPPGVAGPPGGSGPAGPP-GPQGVKGERGSPGG 868
Query: 75 PDLEEGVPGARG-----HSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVA 129
P G PGARG S+ G P + + T A G P V
Sbjct: 869 PGAA-GFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGA-PGSPGV------- 919
Query: 130 SEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGP 189
S + A + G +G G L I ARG+ AG G+ GP
Sbjct: 920 SGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGIT--GARGL--AGPPGMP--------GP 967
Query: 190 RWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQV 249
R PG G GK + +S R P G P R G+
Sbjct: 968 RGS----------PGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGN-- 1015
Query: 250 PSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSRSRRRYL 309
PGS P G S G GD G GSP P A G P PP P G R
Sbjct: 1016 --PGSDGLP----GRDGSPGGKGDRGENGSPGA--PGAPGHPGPPGPVGPAGKSGDRGE- 1066
Query: 310 WRWDSAAGVAGGARAALSSSA 330
AG AG A S A
Sbjct: 1067 ---SGPAGPAGAPGPAGSRGA 1084
Score = 38.1 bits (87), Expect = 0.013
Identities = 58/218 (26%), Positives = 76/218 (34%), Gaps = 32/218 (14%)
Query: 177 GVAVGEELQDTGPRWGEGEGEEQGRE--PGSGNTTGTLGKELVSQVSTRRAVHPPTPKRA 234
GVAVG GP G G PGS + G G + PP P A
Sbjct: 163 GVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPP--GEPGQAGPSGPPGPPGA 220
Query: 235 RTGPGPS--------PLRSGHQ-VPSPGSVLSPHMLFGHPPSAAG------GGDSGGEGS 279
GP+ P R G + +P P + P + G P G+ G G+
Sbjct: 221 IGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGA 280
Query: 280 P----EPLLPPAQGPPAPPRPQKARGSRSRRRYLWRWDSAAGVAG--GARAALSSSAAEA 333
P E LP G P P P+ A G R R AAG G GAR +
Sbjct: 281 PGLKGENGLPGENGAPGPMGPRGAPGERGRPGL----PGAAGARGNDGARGSDGQPGPPG 336
Query: 334 AAAAA---AAAAARMDFLSGPSPAASAASPERRDPARQ 368
A + A+ + SP ++ A +R +P Q
Sbjct: 337 PPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQ 374
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 47.0 bits (110), Expect = 3e-05
Identities = 47/161 (29%), Positives = 66/161 (40%), Gaps = 23/161 (14%)
Query: 225 AVHPPTPKRARTGPGP---SPLRSGHQVPS-PGSVLSPHMLFGHPPSAAGGGDSGGEGSP 280
A PP+P A+ GP +PL + P+ P +V P PP A + P
Sbjct: 156 ATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPP 215
Query: 281 EPLLPPAQGPPAPPRPQ------KARGSRSRR----RYLWRWDSAAGVAGG--ARAALSS 328
+P PP Q P PP+PQ R + R R + R+ +G AGG R +
Sbjct: 216 QPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGRLTRGRVQG 275
Query: 329 SAAEAAAAAAAAAAARMDFLS-------GPSPAASAASPER 362
E AAA R+ L+ G +P A++A P R
Sbjct: 276 LLEEEAAARGRLERTRLGALALPRGDRPGRAPPAASARPSR 316
Score = 32.7 bits (73), Expect = 0.53
Identities = 37/146 (25%), Positives = 43/146 (29%), Gaps = 35/146 (23%)
Query: 220 VSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGS 279
+S R A P+R T P P P G P +AA
Sbjct: 91 ISYRNAARVQPPRRGATPPAP-----------------PRAPRGAPAAAAAAAP------ 127
Query: 280 PEPLLPPAQGPPAPPRPQKARGSRSRRRYLWRWDSAAGVAGGARAALSSSAAEAAAAAAA 339
PP PP PP P A R AA A A + + A AA
Sbjct: 128 -----PPTPAPPPPPAPVAAAAPARAPR-------AAAAAATAPPSPGPAQPGPRAQRAA 175
Query: 340 AAAARMDFLSGPSPAASAASPERRDP 365
AA + P A A P R P
Sbjct: 176 PLAAPPPAPAAPPAVAPPAGPRRAPP 201
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 46.6 bits (109), Expect = 4e-05
Identities = 50/149 (33%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
Query: 225 AVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLL 284
A +PP P GP PS S SP L H G P A GG S G
Sbjct: 38 AAYPPLP----AGP-PSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGS------- 85
Query: 285 PPAQGPPAPP--------RPQKARGSRSRRRYLWRWDSAAGVAGGARAALSSSAAEAAAA 336
PP Q A P RP S + S++ + A A+ +S+AA AAAA
Sbjct: 86 PPQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAA 145
Query: 337 AAAAAAARMDFLSGPSPAASAASPERRDP 365
AAAAA++ L+G P S+ SP P
Sbjct: 146 AAAAASSPAGLLAG-LPRFSSLSPPPPPP 173
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 45.8 bits (107), Expect = 6e-05
Identities = 50/161 (31%), Positives = 57/161 (35%), Gaps = 30/161 (18%)
Query: 162 QVEEAARGVVRAG---GEGVA--VGEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKE- 215
Q E +R ++G GEG A G + P+ G G G G PG G G
Sbjct: 166 QFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGG 225
Query: 216 -----LVSQVSTRRAVHPPTPKRARTGPGPS---------PLRSGHQVPSPGSVLSPHML 261
Q R + PP P P P P G + P P VL P
Sbjct: 226 PPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPP--VLFPGQP 283
Query: 262 FGHPPSAAGGGDSG------GEGSPEPLLPPAQGPPAPPRP 296
FG PP G G G G P PP QGPP PP P
Sbjct: 284 FGQPP--LGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGP 322
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 45.4 bits (106), Expect = 8e-05
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 266 PSAAGGGDSGGEGSPEPLLPPA--QGPPAP-PRPQKARGSRSRRRYLWRWDSAAGVAGGA 322
PS G SGG PPA Q PP P P PQ+ + + + G GG
Sbjct: 18 PSEKGAHPSGGADDVAKKPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGKGGHRGGGGGGG 77
Query: 323 RAALSSSAAEAAAAAAAAAAA 343
+++ SSSA+ AAAAAAA+++A
Sbjct: 78 KSSSSSSASAAAAAAAASSSA 98
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 45.4 bits (106), Expect = 8e-05
Identities = 95/336 (28%), Positives = 130/336 (38%), Gaps = 65/336 (19%)
Query: 7 SSSPIPSPSYLHSGGPGRN----QTWVGG----QGPKAPWPGEGGWDCASPAALACSVGM 58
++ P+ P SG PGR+ QT + G +GP+ G C S L S GM
Sbjct: 831 ATGPVGPPGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFS-GM 889
Query: 59 GRAP---------PG-LGPVGV-GPLVPDLEEGVPGARG--HSHAIVGDPEAAHAVVVAS 105
AP PG GP G+ GP P GVPG +G ++ + G P + +
Sbjct: 890 PGAPGLWMGSSWQPGPQGPPGIPGPPGPP---GVPGLQGVPGNNGLPGQPG------LTA 940
Query: 106 EDSSVTCTVALHGIPDVAVEVVVASEQQPS-AAREGNRGDATDDVVMGVHEEL-----LI 159
E S+ + H + + + V P +G +GD V G+ L
Sbjct: 941 ELGSLP--IEQHLLKSICGDCVQGQRAHPGYLVEKGEKGDQGIPGVPGLDNCAQCFLSLE 998
Query: 160 GPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQ 219
P+ EEA RG G G L GP G+ E+G PG + G G +
Sbjct: 999 RPRAEEA-RGDNSEGDPGCVGSPGLP--GPPGLPGQRGEEG-PPGMRGSPGPPGP--IGP 1052
Query: 220 VSTRRAVHPP-----TPKRARTG-------PGPSPLRSGHQVPSPGSVLSPHMLFGHPPS 267
AV P +R TG PGP P + G+ PG+ P L G
Sbjct: 1053 PGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGP-PGQPGY----PGAT-GPPGLPGIKGE 1106
Query: 268 AAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSR 303
G +G +G P P P ++G P PP P RG R
Sbjct: 1107 RGYTGSAGEKGEPGP--PGSEGLPGPPGPAGPRGER 1140
Score = 34.3 bits (77), Expect = 0.18
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 20 GGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGL-GPVGVGPLVPDLE 78
G PG+ VG GP P +G P+ L S G PPG+ GP G+ L D +
Sbjct: 1168 GFPGK----VGSPGPPGPQAEKGSEGIRGPSGLPGSPG-PPGPPGIQGPAGLDGL--DGK 1220
Query: 79 EGVPGARG 86
+G PG RG
Sbjct: 1221 DGKPGLRG 1228
Score = 30.8 bits (68), Expect = 2.0
Identities = 27/69 (39%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVG-VGPLVPDLEE 79
GP Q + G GPK PG G A GM P G +G VGP P E
Sbjct: 1353 GPPGKQGFYGPPGPKGD-PGAAGQK--GQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGER 1409
Query: 80 GVPGARGHS 88
G PGA G S
Sbjct: 1410 GHPGAPGPS 1418
Score = 30.4 bits (67), Expect = 2.6
Identities = 78/327 (23%), Positives = 107/327 (32%), Gaps = 61/327 (18%)
Query: 3 ASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAP 62
+S +S + SP + G PGR G G K GE G G A
Sbjct: 570 SSTGASGDVGSPGFGLPGLPGR----AGVPGLK----GEKG-------------NFGEAG 608
Query: 63 PGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDV 122
P P GP+ P G+ GA+G +P + +D V VAL G
Sbjct: 609 PAGSPGPPGPVGP---AGIKGAKG-------EPCEPCPALSNLQDGDVR-VVALPGPSGE 657
Query: 123 AVE-----VVVASEQQPSAAR--EGNRGDATDDVVMGVHEEL----LIGPQVEEAARGVV 171
E + +Q + R +G +GDA + G L G + G
Sbjct: 658 KGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPK 717
Query: 172 RAGGEGVAVGEELQDT-----------GPRWGEG-EGEEQGREPGSGNTTGTLGKELVSQ 219
G+G LQ T GP+ +G EG + +PG G G +
Sbjct: 718 GEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKG 777
Query: 220 VSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGS 279
V P P R GP P G +P + P G G G +G+
Sbjct: 778 VQGE----PGPPGRGVQGPQGEPGAPG--LPGIQGLPGPRGPPGPTGEKGAQGSPGVKGA 831
Query: 280 PEPLLPPAQGPPAPPRPQKARGSRSRR 306
P+ PP PP +G R
Sbjct: 832 TGPVGPPGASVSGPPGRDGQQGQTGLR 858
Score = 28.9 bits (63), Expect = 7.7
Identities = 76/301 (25%), Positives = 96/301 (31%), Gaps = 47/301 (15%)
Query: 30 GGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVG-PLVPDLEEGVPGARGHS 88
G QG K GE C+S V A +G G G P +P GVPG +G
Sbjct: 544 GIQGIKGE-KGEPCLSCSSVVGAQHLVSSTGASGDVGSPGFGLPGLPG-RAGVPGLKGEK 601
Query: 89 HAI-----VGDP----EAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAARE 139
G P A + ++ AL + D V VV
Sbjct: 602 GNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEP 661
Query: 140 GNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQ 199
G G L G Q + RG+ G+ G D G G
Sbjct: 662 GPPGFG------------LPGKQGKAGERGLKGQKGDAGNPG----DPGTPGTTGRPGLS 705
Query: 200 GREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTG-PGPSPLRSGHQVPSPGSVLSP 258
G EPG G G++ + T R G PGP + V PG P
Sbjct: 706 G-EPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQP 764
Query: 259 HM--LFGHP--------PSAAGGGDSGGEGSP-EPLLPPAQG------PPAPPRPQKARG 301
+ + G P P G G G +G P P LP QG PP P + A+G
Sbjct: 765 GLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQG 824
Query: 302 S 302
S
Sbjct: 825 S 825
Score = 28.9 bits (63), Expect = 7.7
Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 9/116 (7%)
Query: 188 GPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGH 247
G R G E+G EPG + G G + R + ++ G P G
Sbjct: 1105 GERGYTGSAGEKG-EPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGP 1163
Query: 248 QVPS--PGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARG 301
P PG V SP G P A G G G LP + GPP PP Q G
Sbjct: 1164 PGPPGFPGKVGSP----GPPGPQAEKGSEGIRGPSG--LPGSPGPPGPPGIQGPAG 1213
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 45.1 bits (105), Expect = 1e-04
Identities = 86/316 (27%), Positives = 107/316 (33%), Gaps = 65/316 (20%)
Query: 20 GGPGRNQTWVGGQGPKAPW----PGEGG----------WDCASPAALACSVGMG------ 59
G PG +GG+GP P PG G P L + G
Sbjct: 1347 GEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRG 1406
Query: 60 -RAPPGLGPVGVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHG 118
R PPG G G+ P P L G+PG+ G + P SED G
Sbjct: 1407 ERGPPGPGEGGIAPGEPGL-PGLPGSPGPQGPV--GPPGKKGEKGDSED----------G 1453
Query: 119 IPDVAVEVVVASEQQPSA--AREGNRGDATDDVVMG-VHEELLIGPQVEEAARGVVRAGG 175
P + + EQ P G +GD +G E+ GP +RG+ G
Sbjct: 1454 APGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAG 1513
Query: 176 EGVAVGEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRAR 235
A G E GP G E+G EPG +G + + V P P R
Sbjct: 1514 RPGAKGPE----GPPGPTGRQGEKG-EPGRPGDPAVVGPAVAGPKGEKGDVGPAGP-RGA 1567
Query: 236 TGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGD------SGGEGSPEPLLPPAQ- 288
TG G + P PG VL G P GD +G G P PP +
Sbjct: 1568 TGV------QGERGP-PGLVLP-----GDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEK 1615
Query: 289 ---GPPAPPRPQKARG 301
G P PP P RG
Sbjct: 1616 GDPGRPGPPGPVGPRG 1631
Score = 43.9 bits (102), Expect = 2e-04
Identities = 82/288 (28%), Positives = 96/288 (33%), Gaps = 26/288 (9%)
Query: 29 VGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEGVPGARGHS 88
VGG G P PG G A PA G+ P GP G G P G+PG G S
Sbjct: 2179 VGGHGDPGP-PGAPG--LAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPS 2235
Query: 89 HAI--VGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAREGNRGDAT 146
+ G P V + + A D V S P G +G+
Sbjct: 2236 GLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPV--GPKGEPG 2293
Query: 147 DDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGE-----ELQDTGPRWGEGEGEEQGR 201
G L G + E+ A G G G VGE + GPR +GE G
Sbjct: 2294 PTGAPGQAVVGLPGAKGEKGAPG----GLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGE 2349
Query: 202 -----EPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVL 256
E G G G + V + PP P + G L V
Sbjct: 2350 PGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQT 2409
Query: 257 SPHMLFGHP-PSAAGG--GDSGGEGSPEPLLPPAQGPPAPPRPQKARG 301
P G P PS G G G EG P PL PP GPP P A G
Sbjct: 2410 GPRGEMGQPGPSGERGLAGPPGREGIPGPLGPP--GPPGSVGPPGASG 2455
Score = 37.4 bits (85), Expect = 0.022
Identities = 43/157 (27%), Positives = 56/157 (35%), Gaps = 16/157 (10%)
Query: 160 GPQVEEAARGVVRAGGEGVAVGEELQDTGPRW--GEGEGEEQGREPGSGNTTGTLGKELV 217
GP + RG G G A+ + D G R G GEG EPG G+ G +
Sbjct: 1380 GPLGDPGPRGP--PGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGP 1437
Query: 218 SQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVP-SPGSVLSPHMLFGHPPSAAGGGDSGG 276
++ + A PG P G Q P P + P G P G+ G
Sbjct: 1438 VGPPGKKGEKGDSEDGAPGLPG-QPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGE 1496
Query: 277 EGSPEPL----------LPPAQGPPAPPRPQKARGSR 303
G P P P A+GP PP P +G +
Sbjct: 1497 RGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEK 1533
Score = 37.0 bits (84), Expect = 0.028
Identities = 75/285 (26%), Positives = 98/285 (34%), Gaps = 59/285 (20%)
Query: 29 VGGQGPKAPWPGEGGWDCASPAALACSVGMG-RAPPGLGPVGVGPLVPDLEEGVPGARGH 87
VG G K G+ P MG R P GL G P + G PG +G
Sbjct: 2510 VGSAGLKGD-KGDSAVILGPPGPRGAKGDMGERGPRGLD----GDKGPRGDNGDPGDKG- 2563
Query: 88 SHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAAR-EGNRGDAT 146
S GD +A G+P + ++ + QP AA G+ G
Sbjct: 2564 SKGEPGDKGSA-------------------GLP--GLRGLLGPQGQPGAAGIPGDPGSPG 2602
Query: 147 DDVVMGVHEEL----LIGPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQGR- 201
D V G+ E +GP+ + RGV A G G++ + GP G +G
Sbjct: 2603 KDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDK-GEAGPPGRPGLAGHKGEM 2661
Query: 202 -EPGSGNTTGTLGKE-LVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPH 259
EPG +G GKE L+ R P PK + G
Sbjct: 2662 GEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGER------------------ 2703
Query: 260 MLFGHPPSAAGGGDSGGEGSPEPLLPPAQ-GPPAPPRPQKARGSR 303
G P G SG +GS P PP GP P Q +G R
Sbjct: 2704 ---GTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGER 2745
Score = 34.3 bits (77), Expect = 0.18
Identities = 66/252 (26%), Positives = 80/252 (31%), Gaps = 44/252 (17%)
Query: 60 RAPPGL-GPVGV-GPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALH 117
+ PPG GP+G G + G PG +G +G+ +A E
Sbjct: 1987 QGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKP------- 2039
Query: 118 GIPDVAVEVVVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEG 177
GIP + E A R G RG+ + G E+ GP G G
Sbjct: 2040 GIPGLPGRAGGVGE----AGRPGERGERGEKGERG--EQGRDGPPGLPGTPGPPGPPGPK 2093
Query: 178 VAVGEELQDTGPRWGEGEGEEQGR--------EPGSGNTTGTLGKELVSQVSTRRAVHPP 229
V+V E G G EQG EPGS G G V P
Sbjct: 2094 VSVDEP--------GPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGV-----------P 2134
Query: 230 TPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQG 289
K R PGP +P + P G G GG G P P P A G
Sbjct: 2135 GIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGP--PGAPG 2192
Query: 290 PPAPPRPQKARG 301
P PQ G
Sbjct: 2193 LAGPAGPQGPSG 2204
Score = 32.3 bits (72), Expect = 0.69
Identities = 39/142 (27%), Positives = 50/142 (35%), Gaps = 13/142 (9%)
Query: 172 RAGGEGVAVGEELQDT----GPRWGEGEGEEQGR--EPGS-GNTTGTLGKELVSQVSTRR 224
RAG G L+ + GPR GE +G EPG+ G G G L +
Sbjct: 1312 RAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPG 1371
Query: 225 AVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLL 284
PP P+ PGP PG+ + G G+ GG EP L
Sbjct: 1372 PSGPPGPRGPLGDPGPRGPPG-----LPGTAMKGDKGDRGERGPPGPGE-GGIAPGEPGL 1425
Query: 285 PPAQGPPAPPRPQKARGSRSRR 306
P G P P P G + +
Sbjct: 1426 PGLPGSPGPQGPVGPPGKKGEK 1447
Score = 31.2 bits (69), Expect = 1.5
Identities = 71/310 (22%), Positives = 100/310 (32%), Gaps = 49/310 (15%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPVGVGPLVPDLEEG 80
GP VG +G + P PG+ G A G+ AP GPVG ++G
Sbjct: 1628 GPRGRDGEVGEKGDEGP-PGDPGLP-----GKAGERGLRGAPGVRGPVGEKG-----DQG 1676
Query: 81 VPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSAA--- 137
PG G + G P ++ E G P V+ + ++
Sbjct: 1677 DPGEDGRN----GSPGSSGPKGDRGEPGPP-------GPPGRLVDTGPGAREKGEPGDRG 1725
Query: 138 REGNRGDATDDVVMGVHEELLI-------GPQVEEAARGVVRAGGEGVAVGEELQD---- 186
+EG RG D + G E I GPQ + RG G+ G + +
Sbjct: 1726 QEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDG 1785
Query: 187 -------TGPRWGEGEGEEQGRE--PGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTG 237
+GP G+ + GR+ PG G G + + + G
Sbjct: 1786 KPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNG 1845
Query: 238 PGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGG----GDSGGEGSPEPLLPPAQGPPAP 293
P G + S S P G G G G P P+ PP QG P
Sbjct: 1846 EPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGV 1905
Query: 294 PRPQKARGSR 303
P +G R
Sbjct: 1906 PGGTGPKGDR 1915
Score = 28.9 bits (63), Expect = 7.7
Identities = 39/143 (27%), Positives = 52/143 (36%), Gaps = 11/143 (7%)
Query: 160 GPQVEEAARGVVRAGGEGVAVGEELQDTGPRWGEGEGEEQGRE--PGSGNTTGTLGKELV 217
GP + A+G + G+ G+ G + GE +G++ PG G G E
Sbjct: 2108 GPPGLKGAKGEPGSNGDQGPKGDR-GVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGK 2166
Query: 218 SQVSTRRAVHPPTPKRARTGPGP--SPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSG 275
+ R PP P PGP +P +G P S L PP G +G
Sbjct: 2167 PGLQGPRG--PPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTG 2224
Query: 276 GEGSPEPLLPPA----QGPPAPP 294
G P P P QG P P
Sbjct: 2225 AVGLPGPPGPSGLVGPQGSPGLP 2247
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 45.1 bits (105), Expect = 1e-04
Identities = 38/147 (25%), Positives = 51/147 (34%), Gaps = 34/147 (23%)
Query: 210 GTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAA 269
G+ GK+ S T + GPGP+P P+ +
Sbjct: 170 GSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNP----------------------NPTPS 207
Query: 270 GGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSRSRRRYLWRWDSAAGVAGGARAALSSS 329
G + GG G P P P P P + +G AA A A AA +++
Sbjct: 208 CGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGG------------AAAAAAAAAAAAAAA 255
Query: 330 AAEAAAAAAAAAAARMDFLSGPSPAAS 356
AA AA AAA + GP P S
Sbjct: 256 AAAAAGGLAAAGGPGQGWAPGPGPITS 282
Score = 31.2 bits (69), Expect = 1.5
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 9 SPIPSPSYLHSGGPGRNQTWVGGQGPKAPW-----PGEGGWDCASPAALACSVGMGRAPP 63
+P P+PS +GG G + G G P PG+GG A+ AA A + A
Sbjct: 201 NPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAA 260
Query: 64 GLGPVGVGP 72
G GP
Sbjct: 261 GGLAAAGGP 269
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 45.1 bits (105), Expect = 1e-04
Identities = 38/118 (32%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 188 GPRWGEGEGEEQGREPG--SGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRS 245
GP G G G PG SG G + + +S + P P A+ PGP L+
Sbjct: 225 GPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQI-PGPGRLQG 283
Query: 246 GHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGP-PAPPRPQKARGS 302
+ SPG + SP L G P G G P P+ P P PAP PQ S
Sbjct: 284 PGPILSPGRMRSPGSLPGLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDAS 341
Score = 35.4 bits (80), Expect = 0.082
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 187 TGPRWGEGEGEEQGREPG--SGNTTGTLGKELVSQVS--TRRAVHPPTPKRARTGPGPSP 242
+GP G G G PG SG G + + + + P P GP P P
Sbjct: 172 SGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNP-----GPIPGP 226
Query: 243 LRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARG 301
+ P+PG + P + G P G G P P++ P P P P + +G
Sbjct: 227 IPGPISGPNPGPIPGP--ISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQG 283
Score = 31.6 bits (70), Expect = 1.2
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 237 GPGPSPLRSGHQVPSP------GSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGP 290
GP P+P+ Q+P P G + P + P+ G SG P P P GP
Sbjct: 97 GPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGP 156
Query: 291 PAPPRP 296
+ P P
Sbjct: 157 ISGPAP 162
Score = 31.6 bits (70), Expect = 1.2
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 238 PGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRP 296
PGP+ + S P PG + P + G G SG P P+ P GP P P
Sbjct: 122 PGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIP 180
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 44.7 bits (104), Expect = 1e-04
Identities = 86/338 (25%), Positives = 110/338 (32%), Gaps = 77/338 (22%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDC--ASPAALACSVGMGRA-PPG------------- 64
GP Q VG GPK P PG G D P + G+ PPG
Sbjct: 931 GPQGPQGPVGFPGPKGP-PGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 989
Query: 65 LGPVGV----GPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
GP+G GP P E+G+PGA G A GDP + + + G+P
Sbjct: 990 TGPIGERGHPGPPGPPGEQGLPGAAGKEGA-KGDP-GPQGISGKDGPAGLRGFPGERGLP 1047
Query: 121 DVAVEVVVASEQQPS-----AAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGG 175
+ + P G RG A +G+ GPQ G A G
Sbjct: 1048 GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGR--PGPQGPPGPAGEKGAPG 1105
Query: 176 EGVAVGEELQD-----------TGPRWGEGEGEEQGR--EPGSGNTTGTLGKELVSQVST 222
E G +D GP GE ++G EPG + G G+
Sbjct: 1106 EKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGEN------- 1158
Query: 223 RRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGH-----------PPSAAG- 270
PP P + G + G P P +FG PP G
Sbjct: 1159 ----GPPGPPGLQGPVGAPGIAGGDGEPGP---RGQQGMFGQKGDEGARGFPGPPGPIGL 1211
Query: 271 ------GGDSGGEGSPEPLLPPAQGPPAPPRPQKARGS 302
G+ G G P+ PP GPP P PQ G+
Sbjct: 1212 QGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGA 1247
Score = 42.4 bits (98), Expect = 7e-04
Identities = 80/305 (26%), Positives = 108/305 (35%), Gaps = 51/305 (16%)
Query: 2 RASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRA 61
R S ++ PI G PGR G QGP P +G P A G+
Sbjct: 1074 RGSAGTAGPI--------GLPGR----PGPQGPPGPAGEKGAPGEKGPQGPAGRDGV--- 1118
Query: 62 PPGLGPVGV-GPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
GPVG+ GP P G G +G +G+P + E+ L G
Sbjct: 1119 ---QGPVGLPGPAGPAGSPGEDGDKGE----IGEPGQKGSKGDKGENGP-PGPPGLQG-- 1168
Query: 121 DVAVEVVVASEQQPS-AAREGNRGDATDDVVMG-------VHEELLIGPQVEEAARGVVR 172
V + + +P ++G G D+ G + + L GP E+ G V
Sbjct: 1169 PVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG 1228
Query: 173 AGGEGVAVGEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPK 232
G G GP+ G QG PGS + G +G+ + A +P P
Sbjct: 1229 PMGPPGPPGPR----GPQGPNGADGPQG-PPGSVGSVGGVGE----KGEPGEAGNPGPPG 1279
Query: 233 RARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPL-LPPAQGPP 291
A G GP R P P G P GD G +G+P P+ P GPP
Sbjct: 1280 EAGVG-GPKGERGEKGEAGPPGAAGPPGAKGPP------GDDGPKGNPGPVGFPGDPGPP 1332
Query: 292 APPRP 296
P P
Sbjct: 1333 GEPGP 1337
Score = 39.7 bits (91), Expect = 0.004
Identities = 77/291 (26%), Positives = 105/291 (36%), Gaps = 59/291 (20%)
Query: 26 QTWVGGQGPKAPW-----PGEGGWDCASPAALACSVGMGRAPPGLGPVGV----GPLVPD 76
Q + +GP P PG G +S A G P GP GV GP
Sbjct: 534 QARIALRGPPGPMGLTGRPGPVGGPGSSGAK-----GESGDPGPQGPRGVQGPPGPTGKP 588
Query: 77 LEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSA 136
+ G PGA G + G+P A G+P + + E+ P
Sbjct: 589 GKRGRPGADG-GRGMPGEPGAKG-------------DRGFDGLPGLPGDKGHRGERGP-- 632
Query: 137 AREGNRGDATDDVVMGVHEELLIGPQV---EEAARGVVRAGGEGVAVGEELQD--TGPRW 191
+G G DD + G E IGP+ E RG++ G A G+ GP
Sbjct: 633 --QGPPGPPGDDGMRGEDGE--IGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG 688
Query: 192 GEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPS 251
+G QG EPG G G + + + + PP K + PG + L
Sbjct: 689 PKGNMGPQG-EPGPPGQQGNPGPQGLP--GPQGPIGPPGEKGPQGKPGLAGL-------- 737
Query: 252 PGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGS 302
PG+ P GHP G+ G G P P QGP P P+ +G+
Sbjct: 738 PGADGPP----GHPGKEGQSGEKGALGPPGP-----QGPIGYPGPRGVKGA 779
Score = 39.3 bits (90), Expect = 0.006
Identities = 99/369 (26%), Positives = 114/369 (30%), Gaps = 87/369 (23%)
Query: 20 GGPGRN--QTWVGGQGPKAPW--PGEGG--WDCASPAALACSVGMGR----APPGL-GPV 68
G GR+ Q VG GP P PGE G + P G PPGL GPV
Sbjct: 1111 GPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPV 1170
Query: 69 GVGPLVPDLEEGVPGARGHSHAI--VGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEV 126
G + +G PG RG GD E A + L G+P E
Sbjct: 1171 GAPGIAGG--DGEPGPRGQQGMFGQKGD-EGARGF------PGPPGPIGLQGLPGPPGEK 1221
Query: 127 VVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGE---- 182
+ P G G G GPQ + G V GE GE
Sbjct: 1222 GENGDVGPMGP-PGPPGPRGPQGPNGAD-----GPQGPPGSVGSVGGVGEKGEPGEAGNP 1275
Query: 183 ----ELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGP 238
E GP+ GE E G PG+ G G PP + P
Sbjct: 1276 GPPGEAGVGGPKGERGEKGEAG-PPGAAGPPGAKG--------------PPGDDGPKGNP 1320
Query: 239 GPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAG---GGDSGGEGSP-EPLLPPAQGPPAPP 294
GP V PG P G P A GGD G +G P +P P G PP
Sbjct: 1321 GP--------VGFPGDPGPP----GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPP 1368
Query: 295 RPQKARGSRSRRRYLWRWDSAAGVAG--GARAALSSSAAEAAAAAAAAAAARMDFLSGPS 352
P RG AAG G G + A + AE GP
Sbjct: 1369 GPPGKRGP----------PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV--------GPQ 1410
Query: 353 PAASAASPE 361
A PE
Sbjct: 1411 GPAGKPGPE 1419
Score = 37.0 bits (84), Expect = 0.028
Identities = 43/156 (27%), Positives = 58/156 (37%), Gaps = 21/156 (13%)
Query: 160 GPQVEEAARGVVRAGGEGVAVGEE--LQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELV 217
G + E +G G G VG + +TGP G G PG G GKE
Sbjct: 961 GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPG-PPGEQGLPGAAGKE-- 1017
Query: 218 SQVSTRRAVHPPTPKRARTGPGPSPLRS-GHQVPSPGSVLSPHMLFGHPPSAAGG----- 271
A P P+ GP+ LR + PG+ +P + G P G
Sbjct: 1018 ------GAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1071
Query: 272 GDSGGEGSPEPL----LPPAQGPPAPPRPQKARGSR 303
G+ G G+ P+ P QGPP P + A G +
Sbjct: 1072 GERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEK 1107
Score = 37.0 bits (84), Expect = 0.028
Identities = 82/304 (26%), Positives = 100/304 (32%), Gaps = 49/304 (16%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGG-------WDCASPAALACSVGMGRAPPGLGPVGV-GP 72
GP + VGG G K PGE G P G P GP G GP
Sbjct: 1252 GPPGSVGSVGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1310
Query: 73 LVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQ 132
D +G PG G GDP A +D V G P + E
Sbjct: 1311 PGDDGPKGNPGPVGFP----GDPGPPGEPGPAGQDG-VGGDKGEDGDPGQPGPPGPSGEA 1365
Query: 133 QPSA--AREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPR 190
P + G G A + G Q E+ A+G AG EG TGP
Sbjct: 1366 GPPGPPGKRGPPGAAGAE-----------GRQGEKGAKG--EAGAEGPP-----GKTGPV 1407
Query: 191 WGEGEGEEQGREPGSGNTTGTLGKE----LVSQVSTRRAVHPPTPKRARTGPGPSPLRSG 246
+G + G E G G +G++ Q + PP + PG S G
Sbjct: 1408 GPQGPAGKPGPE-GLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPG-SKGEKG 1465
Query: 247 HQ-------VPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKA 299
H P L G S GD G G PL PP GPP P PQ
Sbjct: 1466 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPP--GPPGLPGPQGP 1523
Query: 300 RGSR 303
+G++
Sbjct: 1524 KGNK 1527
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 44.7 bits (104), Expect = 1e-04
Identities = 86/338 (25%), Positives = 110/338 (32%), Gaps = 77/338 (22%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDC--ASPAALACSVGMGRA-PPG------------- 64
GP Q VG GPK P PG G D P + G+ PPG
Sbjct: 880 GPQGPQGPVGFPGPKGP-PGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 938
Query: 65 LGPVGV----GPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
GP+G GP P E+G+PGA G A GDP + + + G+P
Sbjct: 939 TGPIGERGHPGPPGPPGEQGLPGAAGKEGA-KGDP-GPQGISGKDGPAGLRGFPGERGLP 996
Query: 121 DVAVEVVVASEQQPS-----AAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGG 175
+ + P G RG A +G+ GPQ G A G
Sbjct: 997 GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGR--PGPQGPPGPAGEKGAPG 1054
Query: 176 EGVAVGEELQD-----------TGPRWGEGEGEEQGR--EPGSGNTTGTLGKELVSQVST 222
E G +D GP GE ++G EPG + G G+
Sbjct: 1055 EKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGEN------- 1107
Query: 223 RRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGH-----------PPSAAG- 270
PP P + G + G P P +FG PP G
Sbjct: 1108 ----GPPGPPGLQGPVGAPGIAGGDGEPGP---RGQQGMFGQKGDEGARGFPGPPGPIGL 1160
Query: 271 ------GGDSGGEGSPEPLLPPAQGPPAPPRPQKARGS 302
G+ G G P+ PP GPP P PQ G+
Sbjct: 1161 QGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGA 1196
Score = 42.4 bits (98), Expect = 7e-04
Identities = 80/305 (26%), Positives = 108/305 (35%), Gaps = 51/305 (16%)
Query: 2 RASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRA 61
R S ++ PI G PGR G QGP P +G P A G+
Sbjct: 1023 RGSAGTAGPI--------GLPGR----PGPQGPPGPAGEKGAPGEKGPQGPAGRDGV--- 1067
Query: 62 PPGLGPVGV-GPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
GPVG+ GP P G G +G +G+P + E+ L G
Sbjct: 1068 ---QGPVGLPGPAGPAGSPGEDGDKGE----IGEPGQKGSKGDKGENGP-PGPPGLQG-- 1117
Query: 121 DVAVEVVVASEQQPS-AAREGNRGDATDDVVMG-------VHEELLIGPQVEEAARGVVR 172
V + + +P ++G G D+ G + + L GP E+ G V
Sbjct: 1118 PVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG 1177
Query: 173 AGGEGVAVGEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPK 232
G G GP+ G QG PGS + G +G+ + A +P P
Sbjct: 1178 PMGPPGPPGPR----GPQGPNGADGPQG-PPGSVGSVGGVGE----KGEPGEAGNPGPPG 1228
Query: 233 RARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPL-LPPAQGPP 291
A G GP R P P G P GD G +G+P P+ P GPP
Sbjct: 1229 EAGVG-GPKGERGEKGEAGPPGAAGPPGAKGPP------GDDGPKGNPGPVGFPGDPGPP 1281
Query: 292 APPRP 296
P P
Sbjct: 1282 GEPGP 1286
Score = 39.7 bits (91), Expect = 0.004
Identities = 77/291 (26%), Positives = 105/291 (36%), Gaps = 59/291 (20%)
Query: 26 QTWVGGQGPKAPW-----PGEGGWDCASPAALACSVGMGRAPPGLGPVGV----GPLVPD 76
Q + +GP P PG G +S A G P GP GV GP
Sbjct: 483 QARIALRGPPGPMGLTGRPGPVGGPGSSGAK-----GESGDPGPQGPRGVQGPPGPTGKP 537
Query: 77 LEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSA 136
+ G PGA G + G+P A G+P + + E+ P
Sbjct: 538 GKRGRPGADG-GRGMPGEPGAKG-------------DRGFDGLPGLPGDKGHRGERGP-- 581
Query: 137 AREGNRGDATDDVVMGVHEELLIGPQV---EEAARGVVRAGGEGVAVGEELQD--TGPRW 191
+G G DD + G E IGP+ E RG++ G A G+ GP
Sbjct: 582 --QGPPGPPGDDGMRGEDGE--IGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG 637
Query: 192 GEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPS 251
+G QG EPG G G + + + + PP K + PG + L
Sbjct: 638 PKGNMGPQG-EPGPPGQQGNPGPQGLP--GPQGPIGPPGEKGPQGKPGLAGL-------- 686
Query: 252 PGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGS 302
PG+ P GHP G+ G G P P QGP P P+ +G+
Sbjct: 687 PGADGPP----GHPGKEGQSGEKGALGPPGP-----QGPIGYPGPRGVKGA 728
Score = 39.3 bits (90), Expect = 0.006
Identities = 99/369 (26%), Positives = 114/369 (30%), Gaps = 87/369 (23%)
Query: 20 GGPGRN--QTWVGGQGPKAPW--PGEGG--WDCASPAALACSVGMGR----APPGL-GPV 68
G GR+ Q VG GP P PGE G + P G PPGL GPV
Sbjct: 1060 GPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPV 1119
Query: 69 GVGPLVPDLEEGVPGARGHSHAI--VGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEV 126
G + +G PG RG GD E A + L G+P E
Sbjct: 1120 GAPGIAGG--DGEPGPRGQQGMFGQKGD-EGARGF------PGPPGPIGLQGLPGPPGEK 1170
Query: 127 VVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGE---- 182
+ P G G G GPQ + G V GE GE
Sbjct: 1171 GENGDVGPMGP-PGPPGPRGPQGPNGAD-----GPQGPPGSVGSVGGVGEKGEPGEAGNP 1224
Query: 183 ----ELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGP 238
E GP+ GE E G PG+ G G PP + P
Sbjct: 1225 GPPGEAGVGGPKGERGEKGEAG-PPGAAGPPGAKG--------------PPGDDGPKGNP 1269
Query: 239 GPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAG---GGDSGGEGSP-EPLLPPAQGPPAPP 294
GP V PG P G P A GGD G +G P +P P G PP
Sbjct: 1270 GP--------VGFPGDPGPP----GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPP 1317
Query: 295 RPQKARGSRSRRRYLWRWDSAAGVAG--GARAALSSSAAEAAAAAAAAAAARMDFLSGPS 352
P RG AAG G G + A + AE GP
Sbjct: 1318 GPPGKRGP----------PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV--------GPQ 1359
Query: 353 PAASAASPE 361
A PE
Sbjct: 1360 GPAGKPGPE 1368
Score = 37.0 bits (84), Expect = 0.028
Identities = 43/156 (27%), Positives = 58/156 (37%), Gaps = 21/156 (13%)
Query: 160 GPQVEEAARGVVRAGGEGVAVGEE--LQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELV 217
G + E +G G G VG + +TGP G G PG G GKE
Sbjct: 910 GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPG-PPGEQGLPGAAGKE-- 966
Query: 218 SQVSTRRAVHPPTPKRARTGPGPSPLRS-GHQVPSPGSVLSPHMLFGHPPSAAGG----- 271
A P P+ GP+ LR + PG+ +P + G P G
Sbjct: 967 ------GAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1020
Query: 272 GDSGGEGSPEPL----LPPAQGPPAPPRPQKARGSR 303
G+ G G+ P+ P QGPP P + A G +
Sbjct: 1021 GERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEK 1056
Score = 37.0 bits (84), Expect = 0.028
Identities = 82/304 (26%), Positives = 100/304 (32%), Gaps = 49/304 (16%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGG-------WDCASPAALACSVGMGRAPPGLGPVGV-GP 72
GP + VGG G K PGE G P G P GP G GP
Sbjct: 1201 GPPGSVGSVGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1259
Query: 73 LVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQ 132
D +G PG G GDP A +D V G P + E
Sbjct: 1260 PGDDGPKGNPGPVGFP----GDPGPPGEPGPAGQDG-VGGDKGEDGDPGQPGPPGPSGEA 1314
Query: 133 QPSA--AREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPR 190
P + G G A + G Q E+ A+G AG EG TGP
Sbjct: 1315 GPPGPPGKRGPPGAAGAE-----------GRQGEKGAKG--EAGAEGPP-----GKTGPV 1356
Query: 191 WGEGEGEEQGREPGSGNTTGTLGKE----LVSQVSTRRAVHPPTPKRARTGPGPSPLRSG 246
+G + G E G G +G++ Q + PP + PG S G
Sbjct: 1357 GPQGPAGKPGPE-GLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPG-SKGEKG 1414
Query: 247 HQ-------VPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKA 299
H P L G S GD G G PL PP GPP P PQ
Sbjct: 1415 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPP--GPPGLPGPQGP 1472
Query: 300 RGSR 303
+G++
Sbjct: 1473 KGNK 1476
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 44.7 bits (104), Expect = 1e-04
Identities = 86/338 (25%), Positives = 110/338 (32%), Gaps = 77/338 (22%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGGWDC--ASPAALACSVGMGRA-PPG------------- 64
GP Q VG GPK P PG G D P + G+ PPG
Sbjct: 919 GPQGPQGPVGFPGPKGP-PGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 977
Query: 65 LGPVGV----GPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
GP+G GP P E+G+PGA G A GDP + + + G+P
Sbjct: 978 TGPIGERGHPGPPGPPGEQGLPGAAGKEGA-KGDP-GPQGISGKDGPAGLRGFPGERGLP 1035
Query: 121 DVAVEVVVASEQQPS-----AAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGG 175
+ + P G RG A +G+ GPQ G A G
Sbjct: 1036 GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGR--PGPQGPPGPAGEKGAPG 1093
Query: 176 EGVAVGEELQD-----------TGPRWGEGEGEEQGR--EPGSGNTTGTLGKELVSQVST 222
E G +D GP GE ++G EPG + G G+
Sbjct: 1094 EKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGEN------- 1146
Query: 223 RRAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGH-----------PPSAAG- 270
PP P + G + G P P +FG PP G
Sbjct: 1147 ----GPPGPPGLQGPVGAPGIAGGDGEPGP---RGQQGMFGQKGDEGARGFPGPPGPIGL 1199
Query: 271 ------GGDSGGEGSPEPLLPPAQGPPAPPRPQKARGS 302
G+ G G P+ PP GPP P PQ G+
Sbjct: 1200 QGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGA 1235
Score = 42.4 bits (98), Expect = 7e-04
Identities = 80/305 (26%), Positives = 108/305 (35%), Gaps = 51/305 (16%)
Query: 2 RASCSSSSPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRA 61
R S ++ PI G PGR G QGP P +G P A G+
Sbjct: 1062 RGSAGTAGPI--------GLPGR----PGPQGPPGPAGEKGAPGEKGPQGPAGRDGV--- 1106
Query: 62 PPGLGPVGV-GPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIP 120
GPVG+ GP P G G +G +G+P + E+ L G
Sbjct: 1107 ---QGPVGLPGPAGPAGSPGEDGDKGE----IGEPGQKGSKGDKGENGP-PGPPGLQG-- 1156
Query: 121 DVAVEVVVASEQQPS-AAREGNRGDATDDVVMG-------VHEELLIGPQVEEAARGVVR 172
V + + +P ++G G D+ G + + L GP E+ G V
Sbjct: 1157 PVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG 1216
Query: 173 AGGEGVAVGEELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPK 232
G G GP+ G QG PGS + G +G+ + A +P P
Sbjct: 1217 PMGPPGPPGPR----GPQGPNGADGPQG-PPGSVGSVGGVGE----KGEPGEAGNPGPPG 1267
Query: 233 RARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPL-LPPAQGPP 291
A G GP R P P G P GD G +G+P P+ P GPP
Sbjct: 1268 EAGVG-GPKGERGEKGEAGPPGAAGPPGAKGPP------GDDGPKGNPGPVGFPGDPGPP 1320
Query: 292 APPRP 296
P P
Sbjct: 1321 GEPGP 1325
Score = 39.7 bits (91), Expect = 0.004
Identities = 77/291 (26%), Positives = 105/291 (36%), Gaps = 59/291 (20%)
Query: 26 QTWVGGQGPKAPW-----PGEGGWDCASPAALACSVGMGRAPPGLGPVGV----GPLVPD 76
Q + +GP P PG G +S A G P GP GV GP
Sbjct: 522 QARIALRGPPGPMGLTGRPGPVGGPGSSGAK-----GESGDPGPQGPRGVQGPPGPTGKP 576
Query: 77 LEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQQPSA 136
+ G PGA G + G+P A G+P + + E+ P
Sbjct: 577 GKRGRPGADG-GRGMPGEPGAKG-------------DRGFDGLPGLPGDKGHRGERGP-- 620
Query: 137 AREGNRGDATDDVVMGVHEELLIGPQV---EEAARGVVRAGGEGVAVGEELQD--TGPRW 191
+G G DD + G E IGP+ E RG++ G A G+ GP
Sbjct: 621 --QGPPGPPGDDGMRGEDGE--IGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG 676
Query: 192 GEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGPGPSPLRSGHQVPS 251
+G QG EPG G G + + + + PP K + PG + L
Sbjct: 677 PKGNMGPQG-EPGPPGQQGNPGPQGLP--GPQGPIGPPGEKGPQGKPGLAGL-------- 725
Query: 252 PGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGS 302
PG+ P GHP G+ G G P P QGP P P+ +G+
Sbjct: 726 PGADGPP----GHPGKEGQSGEKGALGPPGP-----QGPIGYPGPRGVKGA 767
Score = 39.3 bits (90), Expect = 0.006
Identities = 99/369 (26%), Positives = 114/369 (30%), Gaps = 87/369 (23%)
Query: 20 GGPGRN--QTWVGGQGPKAPW--PGEGG--WDCASPAALACSVGMGR----APPGL-GPV 68
G GR+ Q VG GP P PGE G + P G PPGL GPV
Sbjct: 1099 GPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPV 1158
Query: 69 GVGPLVPDLEEGVPGARGHSHAI--VGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEV 126
G + +G PG RG GD E A + L G+P E
Sbjct: 1159 GAPGIAGG--DGEPGPRGQQGMFGQKGD-EGARGF------PGPPGPIGLQGLPGPPGEK 1209
Query: 127 VVASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGE---- 182
+ P G G G GPQ + G V GE GE
Sbjct: 1210 GENGDVGPMGP-PGPPGPRGPQGPNGAD-----GPQGPPGSVGSVGGVGEKGEPGEAGNP 1263
Query: 183 ----ELQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPTPKRARTGP 238
E GP+ GE E G PG+ G G PP + P
Sbjct: 1264 GPPGEAGVGGPKGERGEKGEAG-PPGAAGPPGAKG--------------PPGDDGPKGNP 1308
Query: 239 GPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAG---GGDSGGEGSP-EPLLPPAQGPPAPP 294
GP V PG P G P A GGD G +G P +P P G PP
Sbjct: 1309 GP--------VGFPGDPGPP----GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPP 1356
Query: 295 RPQKARGSRSRRRYLWRWDSAAGVAG--GARAALSSSAAEAAAAAAAAAAARMDFLSGPS 352
P RG AAG G G + A + AE GP
Sbjct: 1357 GPPGKRGP----------PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV--------GPQ 1398
Query: 353 PAASAASPE 361
A PE
Sbjct: 1399 GPAGKPGPE 1407
Score = 37.0 bits (84), Expect = 0.028
Identities = 43/156 (27%), Positives = 58/156 (37%), Gaps = 21/156 (13%)
Query: 160 GPQVEEAARGVVRAGGEGVAVGEE--LQDTGPRWGEGEGEEQGREPGSGNTTGTLGKELV 217
G + E +G G G VG + +TGP G G PG G GKE
Sbjct: 949 GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPG-PPGEQGLPGAAGKE-- 1005
Query: 218 SQVSTRRAVHPPTPKRARTGPGPSPLRS-GHQVPSPGSVLSPHMLFGHPPSAAGG----- 271
A P P+ GP+ LR + PG+ +P + G P G
Sbjct: 1006 ------GAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1059
Query: 272 GDSGGEGSPEPL----LPPAQGPPAPPRPQKARGSR 303
G+ G G+ P+ P QGPP P + A G +
Sbjct: 1060 GERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEK 1095
Score = 37.0 bits (84), Expect = 0.028
Identities = 82/304 (26%), Positives = 100/304 (32%), Gaps = 49/304 (16%)
Query: 21 GPGRNQTWVGGQGPKAPWPGEGG-------WDCASPAALACSVGMGRAPPGLGPVGV-GP 72
GP + VGG G K PGE G P G P GP G GP
Sbjct: 1240 GPPGSVGSVGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1298
Query: 73 LVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGIPDVAVEVVVASEQ 132
D +G PG G GDP A +D V G P + E
Sbjct: 1299 PGDDGPKGNPGPVGFP----GDPGPPGEPGPAGQDG-VGGDKGEDGDPGQPGPPGPSGEA 1353
Query: 133 QPSA--AREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAGGEGVAVGEELQDTGPR 190
P + G G A + G Q E+ A+G AG EG TGP
Sbjct: 1354 GPPGPPGKRGPPGAAGAE-----------GRQGEKGAKG--EAGAEGPP-----GKTGPV 1395
Query: 191 WGEGEGEEQGREPGSGNTTGTLGKE----LVSQVSTRRAVHPPTPKRARTGPGPSPLRSG 246
+G + G E G G +G++ Q + PP + PG S G
Sbjct: 1396 GPQGPAGKPGPE-GLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPG-SKGEKG 1453
Query: 247 HQ-------VPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKA 299
H P L G S GD G G PL PP GPP P PQ
Sbjct: 1454 HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPP--GPPGLPGPQGP 1511
Query: 300 RGSR 303
+G++
Sbjct: 1512 KGNK 1515
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 44.7 bits (104), Expect = 1e-04
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 169 GVVRAGGEGVAVGEELQDT-----GPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTR 223
G+ RA G G+ G + GP G G +Q P T + ++
Sbjct: 105 GIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGA 164
Query: 224 RAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPL 283
+PP R GP P P+ G P PG + P + PP G G G+P +
Sbjct: 165 PTQYPP----GRGGP-PPPM--GRGAPPPGMMGPPPGM--RPPMGPPMGIPPGRGTPMGM 215
Query: 284 LPPAQGPPAP 293
PP PP P
Sbjct: 216 PPPGMRPPPP 225
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 44.7 bits (104), Expect = 1e-04
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 169 GVVRAGGEGVAVGEELQDT-----GPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTR 223
G+ RA G G+ G + GP G G +Q P T + ++
Sbjct: 105 GIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGA 164
Query: 224 RAVHPPTPKRARTGPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPL 283
+PP R GP P P+ G P PG + P + PP G G G+P +
Sbjct: 165 PTQYPP----GRGGP-PPPM--GRGAPPPGMMGPPPGM--RPPMGPPMGIPPGRGTPMGM 215
Query: 284 LPPAQGPPAP 293
PP PP P
Sbjct: 216 PPPGMRPPPP 225
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 44.7 bits (104), Expect = 1e-04
Identities = 93/356 (26%), Positives = 122/356 (34%), Gaps = 82/356 (23%)
Query: 5 CSSSSP--IPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAP 62
C SS P + S + G + G GP P PG G +G P
Sbjct: 192 CLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGP-PGPSG-----------PLGHPGLP 239
Query: 63 PGLGPVGV-GPLVPDLEEGVPGARGHS--HAIVGDP-----EAAHAVVVASEDSSVTCTV 114
+GP G+ GP P + G+ G G + G P + A + VA
Sbjct: 240 GPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP---- 295
Query: 115 ALHGIPDVAVEVVVASEQQPSA----AREGNRGDATDDVVMGVHEELLIGPQVEEAARGV 170
GIP E +E P ++G +GDA + + G E GP G
Sbjct: 296 ---GIPGTKGEK--GAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEP---GPPGLPGPPGP 347
Query: 171 VRAGGEGVAVGEELQ--DTGPRWGEGEGEEQGR-----EPGSGNTTGTLGK--ELVSQVS 221
G VG Q D G R GE G EPG G G E + ++
Sbjct: 348 KGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIR 407
Query: 222 TRRAVHPP--------------TPKRARTG-PGPSPLRSGHQVP--SPGSVLSPHMLF-- 262
T + PP ++ G PGP P G + P PG + P
Sbjct: 408 TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGP-PGHDGEKGPRGKPGDMGPPGPQGPP 466
Query: 263 ------------GHP--PSAAGG-GDSGGEGSPEPLLPPAQGPPAPPRPQKARGSR 303
GHP P G G++G GSP P LP +GPP PP Q G +
Sbjct: 467 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVPGPK 522
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 44.7 bits (104), Expect = 1e-04
Identities = 93/356 (26%), Positives = 122/356 (34%), Gaps = 82/356 (23%)
Query: 5 CSSSSP--IPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAP 62
C SS P + S + G + G GP P PG G +G P
Sbjct: 221 CLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGP-PGPSG-----------PLGHPGLP 268
Query: 63 PGLGPVGV-GPLVPDLEEGVPGARGHS--HAIVGDP-----EAAHAVVVASEDSSVTCTV 114
+GP G+ GP P + G+ G G + G P + A + VA
Sbjct: 269 GPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP---- 324
Query: 115 ALHGIPDVAVEVVVASEQQPSA----AREGNRGDATDDVVMGVHEELLIGPQVEEAARGV 170
GIP E +E P ++G +GDA + + G E GP G
Sbjct: 325 ---GIPGTKGEK--GAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEP---GPPGLPGPPGP 376
Query: 171 VRAGGEGVAVGEELQ--DTGPRWGEGEGEEQGR-----EPGSGNTTGTLGK--ELVSQVS 221
G VG Q D G R GE G EPG G G E + ++
Sbjct: 377 KGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIR 436
Query: 222 TRRAVHPP--------------TPKRARTG-PGPSPLRSGHQVP--SPGSVLSPHMLF-- 262
T + PP ++ G PGP P G + P PG + P
Sbjct: 437 TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGP-PGHDGEKGPRGKPGDMGPPGPQGPP 495
Query: 263 ------------GHP--PSAAGG-GDSGGEGSPEPLLPPAQGPPAPPRPQKARGSR 303
GHP P G G++G GSP P LP +GPP PP Q G +
Sbjct: 496 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVPGPK 551
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 44.3 bits (103), Expect = 2e-04
Identities = 81/378 (21%), Positives = 132/378 (34%), Gaps = 40/378 (10%)
Query: 9 SPIPSPSYLHSGGPGRNQTWVGGQGPKAPWPGEGGWDCASPAALACSVGMGRAPPGLGPV 68
SP SP+ G P + ++ +GP P PG + A ++ APP +G V
Sbjct: 248 SPAHSPAKQPLGKPDQERS----RGPGGPQPGSRQAETARATSVP-GPAQAAAPPEVGRV 302
Query: 69 GVGPLVPDLEEGVPGARGHSHAIVGDPEAAHAVVVASEDSSVTCTVALHGI-PDVAVEVV 127
P P A A A + A+E + T L G+ + +
Sbjct: 303 SPQPPQPTKPSTAEPRPPAGEAPAKSATAVPAGLGATEQTQEGLTGKLFGLGASLLTQAS 362
Query: 128 VASEQQPSAAREGNRGDATDDVVMGVHEELLIGPQVEEAARGVVRAG-GEGVAVGEELQD 186
QP A +G + +++ +EA + +G G G A G + +
Sbjct: 363 TLMSVQPEADTQGQPAPSKGT------PKIVFNDASKEAGPKPLGSGPGPGPAPGAKTEP 416
Query: 187 TGPRWGEGEGEEQGREPGSGNTTGTLGKELVSQVSTRRAVHPPT-PKRARTGP-GPSPLR 244
G R G G G G P +G TT Q +++ A P T PK P + L
Sbjct: 417 -GARMGPGSGP--GALPKTGGTTSPKHGRAEHQAASKAAAKPKTMPKERAICPLCQAELN 473
Query: 245 SGHQVPSPGSVLSPHML-------FGHPPSAAGGGD------------SGGEGSPEPLLP 285
G + P+ + + L F P + G G P PL P
Sbjct: 474 VGSKSPANYNTCTTCRLQVCNLCGFNPTPHLVEKTEWLCLNCQTKRLLEGSLGEPTPLPP 533
Query: 286 PAQGPPAPPRPQKARGSRSRRRYLWRWDSAAGVAGGARAALSSSAAEAAAAAAAAAAARM 345
P P P +A G+ ++ + G G A +S + A+ + A+ +
Sbjct: 534 PTSQQPPVGAPHRASGTSPLKQ---KGPQGLGQPSGPLPAKASPLSTKASPLPSKASPQA 590
Query: 346 DFLSGPSPAASAASPERR 363
L P+ + +S + +
Sbjct: 591 KPLRASEPSKTPSSVQEK 608
Score = 43.1 bits (100), Expect = 4e-04
Identities = 43/128 (33%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 237 GPGPSPLRSGHQVPSPGSVLSPHMLFGHPPSA-AGGGDSGGEGSPEPL-LPPAQGPPAPP 294
G G PL G P PG P G PPSA AGGG G+ +PP GP P
Sbjct: 10 GAGDGPLPPGGAGPGPGPGPGPGA--GKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGP 67
Query: 295 RPQKARGSRSRRRYLWRWDSAAGVAGGARAALSSSAAEAAAAAAAAAAARMDFLSGPSPA 354
P GS SRR G RAA S + +A+A + R GP+
Sbjct: 68 GPGPGPGSTSRRL------DPKEPLGNQRAA-SPTPKQASATTPGHESPRETRAQGPA-G 119
Query: 355 ASAASPER 362
A P R
Sbjct: 120 QEADGPRR 127
Score = 28.9 bits (63), Expect = 7.7
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 20/92 (21%)
Query: 228 PPTPKRARTGPGPSPLRSGHQVPSP--GSVLSPHML-----FGHPPSAAGGGD------- 273
P TP P P+ L G+ P+ GS SP +GH P+ A G
Sbjct: 1378 PGTPATTAVAPCPAGLPRGYMTPASPAGSERSPSPSSTAHSYGHSPTTANYGSQTEDLPQ 1437
Query: 274 ------SGGEGSPEPLLPPAQGPPAPPRPQKA 299
+ G + E L + G P+P +A
Sbjct: 1438 APSGLAAAGRAAREKPLSASDGEGGTPQPSRA 1469
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.130 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,645,532
Number of Sequences: 37866
Number of extensions: 1437509
Number of successful extensions: 16026
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 1138
Number of HSP's that attempted gapping in prelim test: 10161
Number of HSP's gapped (non-prelim): 5090
length of query: 368
length of database: 18,247,518
effective HSP length: 104
effective length of query: 264
effective length of database: 14,309,454
effective search space: 3777695856
effective search space used: 3777695856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.